Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:10:25 (862427): wrapper (7.7.26015): starting
11:10:25 (862427): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 11:10:25] Arguments: --nthreads 12
[2025-11-20 11:10:25] Threads: 12
[2025-11-20 11:10:25] Checking for CVMFS
[2025-11-20 11:10:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 11:10:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 11:10:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 11:10:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 11:10:25] 2.11.5.0 1708977 19827 247592 153092 1 478 34906069 45568000 14799 130560 0 190517032 99.790 111364551 24861 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 11:10:25] CVMFS is ok
[2025-11-20 11:10:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 11:10:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 11:10:25] Further information can be found at the LHC@home message board.
[2025-11-20 11:10:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 11:10:25] Checking for apptainer binary...
[2025-11-20 11:10:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 11:10:25] Running /usr/bin/apptainer --version
[2025-11-20 11:10:25] apptainer version 1.4.1-1.el9
[2025-11-20 11:10:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 11:10:25] wns0085.triumf.lcg
[2025-11-20 11:10:25] apptainer works
[2025-11-20 11:10:25] Set ATHENA_PROC_NUMBER=12
[2025-11-20 11:10:25] Set ATHENA_CORE_NUMBER=12
[2025-11-20 11:10:25] Starting ATLAS job with PandaID=6893855184
[2025-11-20 11:10:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 11:14:43]  *** The last 200 lines of the pilot log: ***
[2025-11-20 11:14:43] 2025-11-20 19:14:01,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | WARNING  | wrong length of table data, x=[1763665867.0], y=[1173.0] (must be same and length>=4)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | INFO     | could have reported an average CPU frequency of 2568 MHz (4 samples)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | INFO     | ..............................
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . Timing measurements:
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . get job = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . initial setup = 2 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . payload setup = 6 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . stage-in = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . payload execution = 55 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . stage-out = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . log creation = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | ..............................
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893855184/pilotlog.txt
[2025-11-20 11:14:43] 2025-11-20 19:14:01,250 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 11:14:43] - Log from pilotlog.txt -
[2025-11-20 11:14:43] 2025-11-20 19:14:01,236 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893855184/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,236 | INFO     | extracted standard info from prmon json
[2025-11-20 11:14:43] 2025-11-20 19:14:01,236 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 11:14:43] 2025-11-20 19:14:01,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 11:14:43] 2025-11-20 19:14:01,237 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 11:14:43] 2025-11-20 19:14:01,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | WARNING  | wrong length of table data, x=[1763665867.0], y=[1173.0] (must be same and length>=4)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | INFO     | could have reported an average CPU frequency of 2568 MHz (4 samples)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | INFO     | ..............................
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . Timing measurements:
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . get job = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . initial setup = 2 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . payload setup = 6 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . stage-in = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . payload execution = 55 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . stage-out = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . log creation = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | ..............................
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893855184/pilotlog.txt
[2025-11-20 11:14:43] 2025-11-20 19:14:01,251 | WARNING  | 
[2025-11-20 11:14:43] [begin log extracts]
[2025-11-20 11:14:43] - Log from pilotlog.txt -
[2025-11-20 11:14:43] 2025-11-20 19:14:01,236 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893855184/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,236 | INFO     | extracted standard info from prmon json
[2025-11-20 11:14:43] 2025-11-20 19:14:01,236 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 11:14:43] 2025-11-20 19:14:01,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 11:14:43] 2025-11-20 19:14:01,237 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 11:14:43] 2025-11-20 19:14:01,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | WARNING  | wrong length of table data, x=[1763665867.0], y=[1173.0] (must be same and length>=4)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | INFO     | could have reported an average CPU frequency of 2568 MHz (4 samples)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,238 | INFO     | ..............................
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . Timing measurements:
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . get job = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . initial setup = 2 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . payload setup = 6 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . stage-in = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . payload execution = 55 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . stage-out = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | . log creation = 0 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | ..............................
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 11:14:43] 2025-11-20 19:14:01,239 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893855184/pilotlog.txt
[2025-11-20 11:14:43] [end log extracts]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,251 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,252 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | 
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | job summary report
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | --------------------------------------------------
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | PanDA job id: 6893855184
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | task id: 47523449
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 11:11:51,842 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | pilot state: failed 
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | transexitcode: 65
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | exeerrorcode: 65
[2025-11-20 11:14:43] 2025-11-20 19:14:01,309 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | exitcode: 65
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | cpuconsumptiontime: 42 s
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | nevents: 0
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | neventsw: 0
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | pid: 872727
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | pgrp: 872727
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | corecount: 12
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | event service: False
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | sizes: {0: 2298632, 1: 2298831, 6: 2299093, 11: 2299121, 65: 2328835, 67: 2328835, 187: 2329129}
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | --------------------------------------------------
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | 
[2025-11-20 11:14:43] 2025-11-20 19:14:01,310 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | job 6893855184 has completed (purged errors)
[2025-11-20 11:14:43] 2025-11-20 19:14:01,331 | INFO     | overall cleanup function is called
[2025-11-20 11:14:43] 2025-11-20 19:14:02,338 | INFO     | --- collectZombieJob: --- 10, [872727]
[2025-11-20 11:14:43] 2025-11-20 19:14:02,338 | INFO     | zombie collector waiting for pid 872727
[2025-11-20 11:14:43] 2025-11-20 19:14:02,339 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 11:14:43] 2025-11-20 19:14:02,339 | INFO     | collected zombie processes
[2025-11-20 11:14:43] 2025-11-20 19:14:02,339 | INFO     | will attempt to kill all subprocesses of pid=872727
[2025-11-20 11:14:43] 2025-11-20 19:14:02,515 | INFO     | process IDs to be killed: [872727] (in reverse order)
[2025-11-20 11:14:43] 2025-11-20 19:14:02,584 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 11:14:43] 2025-11-20 19:14:02,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 11:14:43] 2025-11-20 19:14:02,592 | INFO     | did not find any defunct processes belonging to 872727
[2025-11-20 11:14:43] 2025-11-20 19:14:02,600 | INFO     | did not find any defunct processes belonging to 872727
[2025-11-20 11:14:43] 2025-11-20 19:14:02,601 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 11:14:43] 2025-11-20 19:14:02,601 | INFO     | ready for new job
[2025-11-20 11:14:43] 2025-11-20 19:14:02,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 11:14:43] 2025-11-20 19:14:02,603 | INFO     | ***************************************
[2025-11-20 11:14:43] 2025-11-20 19:14:02,603 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 11:14:43] 2025-11-20 19:14:02,603 | INFO     | ***************************************
[2025-11-20 11:14:43] 2025-11-20 19:14:02,603 | INFO     | 
[2025-11-20 11:14:43] 2025-11-20 19:14:02,605 | INFO     | architecture information:
[2025-11-20 11:14:43] 2025-11-20 19:14:02,605 | INFO     | executing command: cat /etc/os-release
[2025-11-20 11:14:43] 2025-11-20 19:14:02,617 | INFO     | cat /etc/os-release:
[2025-11-20 11:14:43] NAME="CentOS Linux"
[2025-11-20 11:14:43] VERSION="7 (Core)"
[2025-11-20 11:14:43] ID="centos"
[2025-11-20 11:14:43] ID_LIKE="rhel fedora"
[2025-11-20 11:14:43] VERSION_ID="7"
[2025-11-20 11:14:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 11:14:43] ANSI_COLOR="0;31"
[2025-11-20 11:14:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 11:14:43] HOME_URL="https://www.centos.org/"
[2025-11-20 11:14:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 11:14:43] 
[2025-11-20 11:14:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 11:14:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 11:14:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 11:14:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 11:14:43] 
[2025-11-20 11:14:43] 2025-11-20 19:14:02,618 | INFO     | ***************************************
[2025-11-20 11:14:43] 2025-11-20 19:14:03,121 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 11:14:43] 2025-11-20 19:14:03,133 | INFO     | sufficient remaining disk space (2019569958912 B)
[2025-11-20 11:14:43] 2025-11-20 19:14:03,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 11:14:43] 2025-11-20 19:14:03,134 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 11:14:43] 2025-11-20 19:14:03,134 | INFO     | update_server=False
[2025-11-20 11:14:43] 2025-11-20 19:14:03,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 11:14:43] 2025-11-20 19:14:03,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 11:14:43] 2025-11-20 19:14:03,134 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 11:14:43] 2025-11-20 19:14:03,135 | INFO     | aborting loop
[2025-11-20 11:14:43] 2025-11-20 19:14:03,135 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 11:14:43] 2025-11-20 19:14:03,392 | INFO     | all data control threads have been joined
[2025-11-20 11:14:43] 2025-11-20 19:14:04,139 | INFO     | [job] job monitor thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:04,140 | INFO     | [job] retrieve thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:04,140 | INFO     | [job] queue monitor thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:04,264 | INFO     | all payload control threads have been joined
[2025-11-20 11:14:43] 2025-11-20 19:14:04,398 | INFO     | [data] control thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:04,400 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 11:14:43] 2025-11-20 19:14:04,519 | INFO     | all job control threads have been joined
[2025-11-20 11:14:43] 2025-11-20 19:14:04,665 | INFO     | [data] copytool_in thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:04,754 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,139 | INFO     | [data] copytool_out thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,176 | INFO     | [payload] failed_post thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,202 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,239 | INFO     | [job] validate thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,269 | INFO     | [payload] control thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,364 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,497 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,521 | INFO     | [payload] validate_post thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:05,524 | INFO     | [job] control thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:08,408 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 11:14:43] 2025-11-20 19:14:32,716 | INFO     | PID=866150 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 11:14:43] 2025-11-20 19:14:32,716 | INFO     | .. there are 27 such processes running
[2025-11-20 11:14:43] 2025-11-20 19:14:32,716 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 11:14:43] 2025-11-20 19:14:32,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 11:14:43] 2025-11-20 19:14:32,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 11:14:43] 2025-11-20 19:14:38,042 | INFO     | [monitor] cgroup control has ended
[2025-11-20 11:14:43] 2025-11-20 19:14:38,334 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955275872064)>', '<ExcThread(monitor, started 139954946541312)>']
[2025-11-20 11:14:43] 2025-11-20 19:14:38,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 11:14:43] 2025-11-20 19:14:38,746 | INFO     | [monitor] control thread has ended
[2025-11-20 11:14:43] 2025-11-20 19:14:43,362 | INFO     | all workflow threads have been joined
[2025-11-20 11:14:43] 2025-11-20 19:14:43,362 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 11:14:43] 2025-11-20 19:14:43,362 | INFO     | traces error code: 0
[2025-11-20 11:14:43] 2025-11-20 19:14:43,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 11:14:43] 2025-11-20 19:14:43,488 [wrapper] ==== pilot stdout END ====
[2025-11-20 11:14:43] 2025-11-20 19:14:43,490 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 11:14:43] 2025-11-20 19:14:43,493 [wrapper] pilotpid: 866150
[2025-11-20 11:14:43] 2025-11-20 19:14:43,495 [wrapper] Pilot exit status: 0
[2025-11-20 11:14:43] 2025-11-20 19:14:43,503 [wrapper] pandaids: 6893855184
[2025-11-20 11:14:43] 2025-11-20 19:14:43,555 [wrapper] cleanup supervisor_pilot  866156 866151
[2025-11-20 11:14:43] 2025-11-20 19:14:43,559 [wrapper] Test setup, not cleaning
[2025-11-20 11:14:43] 2025-11-20 19:14:43,563 [wrapper] apfmon messages muted
[2025-11-20 11:14:43] 2025-11-20 19:14:43,565 [wrapper] ==== wrapper stdout END ====
[2025-11-20 11:14:43] 2025-11-20 19:14:43,568 [wrapper] ==== wrapper stderr END ====
[2025-11-20 11:14:43]  *** Error codes and diagnostics ***
[2025-11-20 11:14:43]     "exeErrorCode": 65,
[2025-11-20 11:14:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 11:14:43]     "pilotErrorCode": 1305,
[2025-11-20 11:14:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 11:14:43]  *** Listing of results directory ***
[2025-11-20 11:14:43] total 404260
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc    576529 Nov 20 04:07 pilot3.tar.gz
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc      5112 Nov 20 04:28 queuedata.json
[2025-11-20 11:14:43] -rwx------. 1 boinc boinc     36292 Nov 20 04:28 runpilot2-wrapper.sh
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc       100 Nov 20 11:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 11:14:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 11:10 run_atlas
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc       105 Nov 20 11:10 job.xml
[2025-11-20 11:14:43] -rw-r--r--. 2 boinc boinc 409761289 Nov 20 11:10 EVNT.47493127._000437.pool.root.1
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc      6595 Nov 20 11:10 init_data.xml
[2025-11-20 11:14:43] -rw-r--r--. 2 boinc boinc     15847 Nov 20 11:10 start_atlas.sh
[2025-11-20 11:14:43] drwxrwx--x. 2 boinc boinc      4096 Nov 20 11:10 shared
[2025-11-20 11:14:43] -rw-r--r--. 2 boinc boinc    590103 Nov 20 11:10 input.tar.gz
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc         0 Nov 20 11:10 boinc_lockfile
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc      2785 Nov 20 11:10 pandaJob.out
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc    989472 Nov 20 11:10 agis_schedconf.cvmfs.json
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc   1526164 Nov 20 11:10 agis_ddmendpoints.agis.ALL.json
[2025-11-20 11:14:43] drwx------. 5 boinc boinc      4096 Nov 20 11:10 pilot3
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc       523 Nov 20 11:11 boinc_task_state.xml
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc       958 Nov 20 11:11 memory_monitor_summary.json
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc     48510 Nov 20 11:11 log.47523449._004367.job.log.tgz.1
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc        95 Nov 20 11:13 pilot_heartbeat.json
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc     10326 Nov 20 11:14 heartbeat.json
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc      8192 Nov 20 11:14 boinc_mmap_file
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc        23 Nov 20 11:14 wrapper_checkpoint.txt
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc      4822 Nov 20 11:14 pilotlog.txt
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc     93210 Nov 20 11:14 log.47523449._004367.job.log.1
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc       186 Nov 20 11:14 output.list
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc       620 Nov 20 11:14 runtime_log
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc    163840 Nov 20 11:14 result.tar.gz
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc       645 Nov 20 11:14 wXpMDmVxIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpcGKDmAiI0On.diag
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc      8636 Nov 20 11:14 runtime_log.err
[2025-11-20 11:14:43] -rw-r--r--. 1 boinc boinc     22381 Nov 20 11:14 stderr.txt
[2025-11-20 11:14:43] No HITS result produced
[2025-11-20 11:14:43]  *** Contents of shared directory: ***
[2025-11-20 11:14:43] total 400920
[2025-11-20 11:14:43] -rw-r--r--. 2 boinc boinc 409761289 Nov 20 11:10 ATLAS.root_0
[2025-11-20 11:14:43] -rw-r--r--. 2 boinc boinc     15847 Nov 20 11:10 start_atlas.sh
[2025-11-20 11:14:43] -rw-r--r--. 2 boinc boinc    590103 Nov 20 11:10 input.tar.gz
[2025-11-20 11:14:43] -rw-------. 1 boinc boinc    163840 Nov 20 11:14 result.tar.gz
11:14:44 (862427): run_atlas exited; CPU time 41.130672
11:14:44 (862427): called boinc_finish(0)

</stderr_txt>
]]>

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