Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:48:19 (1705001): wrapper (7.7.26015): starting
19:48:19 (1705001): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 19:48:19] Arguments: --nthreads 3
[2025-11-20 19:48:19] Threads: 3
[2025-11-20 19:48:19] Checking for CVMFS
[2025-11-20 19:48:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 19:48:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 19:48:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 19:48:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 19:48:20] 2.9.2.0 16720 355 67148 153088 1 88 34405804 36864000 0 130560 0 5073989 99.999 9592 8848 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 19:48:20] CVMFS is ok
[2025-11-20 19:48:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 19:48:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 19:48:20] Further information can be found at the LHC@home message board.
[2025-11-20 19:48:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 19:48:20] Checking for apptainer binary...
[2025-11-20 19:48:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 19:48:20] Running /usr/bin/apptainer --version
[2025-11-20 19:48:20] apptainer version 1.4.1-1.1
[2025-11-20 19:48:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 19:48:20] thA335
[2025-11-20 19:48:20] apptainer works
[2025-11-20 19:48:20] Set ATHENA_PROC_NUMBER=3
[2025-11-20 19:48:20] Set ATHENA_CORE_NUMBER=3
[2025-11-20 19:48:20] Starting ATLAS job with PandaID=6893851350
[2025-11-20 19:48:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:52:36]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:52:36] 2025-11-20 18:51:43,871 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:52:36] 2025-11-20 18:51:43,881 | INFO     | cat /etc/os-release:
[2025-11-20 19:52:36] NAME="CentOS Linux"
[2025-11-20 19:52:36] VERSION="7 (Core)"
[2025-11-20 19:52:36] ID="centos"
[2025-11-20 19:52:36] ID_LIKE="rhel fedora"
[2025-11-20 19:52:36] VERSION_ID="7"
[2025-11-20 19:52:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:52:36] ANSI_COLOR="0;31"
[2025-11-20 19:52:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:52:36] HOME_URL="https://www.centos.org/"
[2025-11-20 19:52:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:52:36] 
[2025-11-20 19:52:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:52:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:52:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:52:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:52:36] 
[2025-11-20 19:52:36] 2025-11-20 18:51:43,882 | INFO     | ***************************************
[2025-11-20 19:52:36] 2025-11-20 18:51:44,385 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 19:52:36] 2025-11-20 18:51:44,399 | INFO     | sufficient remaining disk space (827236286464 B)
[2025-11-20 19:52:36] 2025-11-20 18:51:44,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:52:36] 2025-11-20 18:51:44,400 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:52:36] 2025-11-20 18:51:44,400 | INFO     | update_server=False
[2025-11-20 19:52:36] 2025-11-20 18:51:44,400 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:52:36] 2025-11-20 18:51:44,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:52:36] 2025-11-20 18:51:44,400 | INFO     | aborting loop
[2025-11-20 19:52:36] 2025-11-20 18:51:44,408 | INFO     | all data control threads have been joined
[2025-11-20 19:52:36] 2025-11-20 18:51:44,675 | INFO     | all job control threads have been joined
[2025-11-20 19:52:36] 2025-11-20 18:51:44,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:52:36] 2025-11-20 18:51:45,405 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:45,406 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:45,413 | INFO     | [data] control thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:45,462 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:45,681 | INFO     | [job] control thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:45,690 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:45,836 | INFO     | all payload control threads have been joined
[2025-11-20 19:52:36] 2025-11-20 18:51:46,443 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:46,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:46,626 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:46,713 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:46,720 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:46,818 | INFO     | [job] validate thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:46,842 | INFO     | [payload] control thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:46,900 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:47,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:52:36] 2025-11-20 18:51:47,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:52:36] 2025-11-20 18:51:48,353 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:51:51,524 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:52:36] 2025-11-20 18:52:14,962 | INFO     | PID=1708737 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 19:52:36] 2025-11-20 18:52:14,962 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:52:36] 2025-11-20 18:52:14,962 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:52:36] 2025-11-20 18:52:14,962 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:52:36] 2025-11-20 18:52:30,173 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:52:36] 2025-11-20 18:52:31,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419625346880)>', '<ExcThread(monitor, started 140419352467200)>']
[2025-11-20 19:52:36] 2025-11-20 18:52:32,051 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:52:36] 2025-11-20 18:52:32,051 | INFO     | [monitor] control thread has ended
[2025-11-20 19:52:36] 2025-11-20 18:52:36,183 | INFO     | all workflow threads have been joined
[2025-11-20 19:52:36] 2025-11-20 18:52:36,183 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:52:36] 2025-11-20 18:52:36,184 | INFO     | traces error code: 0
[2025-11-20 19:52:36] 2025-11-20 18:52:36,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:52:36] 2025-11-20 18:52:36,230 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:52:36] 2025-11-20 18:52:36,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:52:36] 2025-11-20 18:52:36,236 [wrapper] pilotpid: 1708737
[2025-11-20 19:52:36] 2025-11-20 18:52:36,239 [wrapper] Pilot exit status: 0
[2025-11-20 19:52:36] 2025-11-20 18:52:36,246 [wrapper] pandaids: 6893851350
[2025-11-20 19:52:36] 2025-11-20 18:52:36,263 [wrapper] cleanup supervisor_pilot 1708743 1708738
[2025-11-20 19:52:36] 2025-11-20 18:52:36,266 [wrapper] Test setup, not cleaning
[2025-11-20 19:52:36] 2025-11-20 18:52:36,268 [wrapper] apfmon messages muted
[2025-11-20 19:52:36] 2025-11-20 18:52:36,271 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:52:36] 2025-11-20 18:52:36,273 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:52:36]  *** Error codes and diagnostics ***
[2025-11-20 19:52:36]     "exeErrorCode": 65,
[2025-11-20 19:52:36]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 19:52:36]     "pilotErrorCode": 1305,
[2025-11-20 19:52:36]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 19:52:36]  *** Listing of results directory ***
[2025-11-20 19:52:36] total 403756
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:39 queuedata.json
[2025-11-20 19:52:36] -rwx------ 1 boinc boinc     36292 Nov 20 12:39 runpilot2-wrapper.sh
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc       100 Nov 20 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:52:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 19:48 run_atlas
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc       105 Nov 20 19:48 job.xml
[2025-11-20 19:52:36] -rw-r--r-- 2 boinc boinc 409250971 Nov 20 19:48 EVNT.47493127._000357.pool.root.1
[2025-11-20 19:52:36] -rw-r--r-- 2 boinc boinc    590099 Nov 20 19:48 input.tar.gz
[2025-11-20 19:52:36] -rw-r--r-- 2 boinc boinc     15847 Nov 20 19:48 start_atlas.sh
[2025-11-20 19:52:36] drwxrwx--x 2 boinc boinc      4096 Nov 20 19:48 shared
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc         0 Nov 20 19:48 boinc_setup_complete
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc      6194 Nov 20 19:48 init_data.xml
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc         0 Nov 20 19:48 boinc_lockfile
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc      2785 Nov 20 19:48 pandaJob.out
[2025-11-20 19:52:36] -rw------- 1 boinc boinc    989440 Nov 20 19:48 agis_schedconf.cvmfs.json
[2025-11-20 19:52:36] -rw------- 1 boinc boinc   1526164 Nov 20 19:48 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:52:36] drwx------ 5 boinc boinc      4096 Nov 20 19:48 pilot3
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc       523 Nov 20 19:49 boinc_task_state.xml
[2025-11-20 19:52:36] -rw------- 1 boinc boinc       961 Nov 20 19:49 memory_monitor_summary.json
[2025-11-20 19:52:36] -rw------- 1 boinc boinc     55562 Nov 20 19:49 log.47523449._003568.job.log.tgz.1
[2025-11-20 19:52:36] -rw------- 1 boinc boinc        95 Nov 20 19:51 pilot_heartbeat.json
[2025-11-20 19:52:36] -rw------- 1 boinc boinc      8386 Nov 20 19:51 heartbeat.json
[2025-11-20 19:52:36] -rw------- 1 boinc boinc      4752 Nov 20 19:52 pilotlog.txt
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc      8192 Nov 20 19:52 boinc_mmap_file
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc        22 Nov 20 19:52 wrapper_checkpoint.txt
[2025-11-20 19:52:36] -rw------- 1 boinc boinc     91875 Nov 20 19:52 log.47523449._003568.job.log.1
[2025-11-20 19:52:36] -rw------- 1 boinc boinc       186 Nov 20 19:52 output.list
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc       620 Nov 20 19:52 runtime_log
[2025-11-20 19:52:36] -rw------- 1 boinc boinc    163840 Nov 20 19:52 result.tar.gz
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc      8744 Nov 20 19:52 runtime_log.err
[2025-11-20 19:52:36] -rw------- 1 boinc boinc       649 Nov 20 19:52 YYlMDmrBIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqYGKDmIGFaon.diag
[2025-11-20 19:52:36] -rw-r--r-- 1 boinc boinc      9256 Nov 20 19:52 stderr.txt
[2025-11-20 19:52:36] No HITS result produced
[2025-11-20 19:52:36]  *** Contents of shared directory: ***
[2025-11-20 19:52:36] total 400420
[2025-11-20 19:52:36] -rw-r--r-- 2 boinc boinc 409250971 Nov 20 19:48 ATLAS.root_0
[2025-11-20 19:52:36] -rw-r--r-- 2 boinc boinc    590099 Nov 20 19:48 input.tar.gz
[2025-11-20 19:52:36] -rw-r--r-- 2 boinc boinc     15847 Nov 20 19:48 start_atlas.sh
[2025-11-20 19:52:36] -rw------- 1 boinc boinc    163840 Nov 20 19:52 result.tar.gz
19:52:38 (1705001): run_atlas exited; CPU time 30.375862
19:52:38 (1705001): called boinc_finish(0)

</stderr_txt>
]]>

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