Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:30:48 (1621603): wrapper (7.7.26015): starting
19:30:48 (1621603): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 19:30:48] Arguments: --nthreads 3
[2025-11-20 19:30:48] Threads: 3
[2025-11-20 19:30:48] Checking for CVMFS
[2025-11-20 19:30:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 19:30:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 19:30:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 19:30:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 19:30:48] 2.9.2.0 16720 337 67856 153088 2 88 34405804 36864000 0 130560 0 4823421 99.999 9590 8937 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 19:30:48] CVMFS is ok
[2025-11-20 19:30:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 19:30:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 19:30:49] Further information can be found at the LHC@home message board.
[2025-11-20 19:30:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 19:30:49] Checking for apptainer binary...
[2025-11-20 19:30:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 19:30:49] Running /usr/bin/apptainer --version
[2025-11-20 19:30:49] apptainer version 1.4.1-1.1
[2025-11-20 19:30:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 19:30:49] thA335
[2025-11-20 19:30:49] apptainer works
[2025-11-20 19:30:49] Set ATHENA_PROC_NUMBER=3
[2025-11-20 19:30:49] Set ATHENA_CORE_NUMBER=3
[2025-11-20 19:30:49] Starting ATLAS job with PandaID=6893839378
[2025-11-20 19:30:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:35:07]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:35:07] 2025-11-20 18:34:14,904 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:35:07] 2025-11-20 18:34:14,913 | INFO     | cat /etc/os-release:
[2025-11-20 19:35:07] NAME="CentOS Linux"
[2025-11-20 19:35:07] VERSION="7 (Core)"
[2025-11-20 19:35:07] ID="centos"
[2025-11-20 19:35:07] ID_LIKE="rhel fedora"
[2025-11-20 19:35:07] VERSION_ID="7"
[2025-11-20 19:35:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:35:07] ANSI_COLOR="0;31"
[2025-11-20 19:35:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:35:07] HOME_URL="https://www.centos.org/"
[2025-11-20 19:35:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:35:07] 
[2025-11-20 19:35:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:35:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:35:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:35:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:35:07] 
[2025-11-20 19:35:07] 2025-11-20 18:34:14,914 | INFO     | ***************************************
[2025-11-20 19:35:07] 2025-11-20 18:34:15,417 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 19:35:07] 2025-11-20 18:34:15,431 | INFO     | sufficient remaining disk space (827650473984 B)
[2025-11-20 19:35:07] 2025-11-20 18:34:15,431 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:35:07] 2025-11-20 18:34:15,431 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:35:07] 2025-11-20 18:34:15,431 | INFO     | update_server=False
[2025-11-20 19:35:07] 2025-11-20 18:34:15,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:35:07] 2025-11-20 18:34:15,431 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:35:07] 2025-11-20 18:34:15,431 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:35:07] 2025-11-20 18:34:15,431 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:35:07] 2025-11-20 18:34:15,432 | INFO     | aborting loop
[2025-11-20 19:35:07] 2025-11-20 18:34:16,007 | INFO     | all data control threads have been joined
[2025-11-20 19:35:07] 2025-11-20 18:34:16,304 | INFO     | all payload control threads have been joined
[2025-11-20 19:35:07] 2025-11-20 18:34:16,437 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:16,438 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:16,439 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:16,863 | INFO     | all job control threads have been joined
[2025-11-20 19:35:07] 2025-11-20 18:34:16,884 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:16,890 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,012 | INFO     | [data] control thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,111 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,300 | INFO     | [job] validate thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,310 | INFO     | [payload] control thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,386 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,429 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,437 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,694 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,869 | INFO     | [job] control thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:17,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:35:07] 2025-11-20 18:34:21,961 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:35:07] 2025-11-20 18:34:45,551 | INFO     | PID=1625338 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 19:35:07] 2025-11-20 18:34:45,552 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:35:07] 2025-11-20 18:34:45,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:35:07] 2025-11-20 18:34:45,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:35:07] 2025-11-20 18:35:00,607 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:35:07] 2025-11-20 18:35:01,835 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074532026176)>', '<ExcThread(monitor, started 140074041730816)>']
[2025-11-20 19:35:07] 2025-11-20 18:35:02,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:35:07] 2025-11-20 18:35:02,642 | INFO     | [monitor] control thread has ended
[2025-11-20 19:35:07] 2025-11-20 18:35:06,861 | INFO     | all workflow threads have been joined
[2025-11-20 19:35:07] 2025-11-20 18:35:06,862 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:35:07] 2025-11-20 18:35:06,862 | INFO     | traces error code: 0
[2025-11-20 19:35:07] 2025-11-20 18:35:06,863 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:35:07] 2025-11-20 18:35:06,942 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:35:07] 2025-11-20 18:35:06,945 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:35:07] 2025-11-20 18:35:06,948 [wrapper] pilotpid: 1625338
[2025-11-20 19:35:07] 2025-11-20 18:35:06,951 [wrapper] Pilot exit status: 0
[2025-11-20 19:35:07] 2025-11-20 18:35:06,959 [wrapper] pandaids: 6893839378
[2025-11-20 19:35:07] 2025-11-20 18:35:06,976 [wrapper] cleanup supervisor_pilot 1625344 1625339
[2025-11-20 19:35:07] 2025-11-20 18:35:06,979 [wrapper] Test setup, not cleaning
[2025-11-20 19:35:07] 2025-11-20 18:35:06,982 [wrapper] apfmon messages muted
[2025-11-20 19:35:07] 2025-11-20 18:35:06,985 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:35:07] 2025-11-20 18:35:06,987 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:35:07]  *** Error codes and diagnostics ***
[2025-11-20 19:35:07]     "exeErrorCode": 65,
[2025-11-20 19:35:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 19:35:07]     "pilotErrorCode": 1305,
[2025-11-20 19:35:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 19:35:07]  *** Listing of results directory ***
[2025-11-20 19:35:07] total 403896
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:17 queuedata.json
[2025-11-20 19:35:07] -rwx------ 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc       100 Nov 20 19:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:35:07] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 19:30 run_atlas
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc       105 Nov 20 19:30 job.xml
[2025-11-20 19:35:07] -rw-r--r-- 2 boinc boinc 409391951 Nov 20 19:30 EVNT.47493127._000149.pool.root.1
[2025-11-20 19:35:07] -rw-r--r-- 2 boinc boinc    590098 Nov 20 19:30 input.tar.gz
[2025-11-20 19:35:07] -rw-r--r-- 2 boinc boinc     15847 Nov 20 19:30 start_atlas.sh
[2025-11-20 19:35:07] drwxrwx--x 2 boinc boinc      4096 Nov 20 19:30 shared
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc         0 Nov 20 19:30 boinc_setup_complete
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc      6194 Nov 20 19:30 init_data.xml
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc         0 Nov 20 19:30 boinc_lockfile
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc      2783 Nov 20 19:30 pandaJob.out
[2025-11-20 19:35:07] -rw------- 1 boinc boinc    989440 Nov 20 19:30 agis_schedconf.cvmfs.json
[2025-11-20 19:35:07] -rw------- 1 boinc boinc   1526164 Nov 20 19:30 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:35:07] drwx------ 5 boinc boinc      4096 Nov 20 19:31 pilot3
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc       523 Nov 20 19:31 boinc_task_state.xml
[2025-11-20 19:35:07] -rw------- 1 boinc boinc       982 Nov 20 19:32 memory_monitor_summary.json
[2025-11-20 19:35:07] -rw------- 1 boinc boinc     55829 Nov 20 19:32 log.47523449._001481.job.log.tgz.1
[2025-11-20 19:35:07] -rw------- 1 boinc boinc        95 Nov 20 19:34 pilot_heartbeat.json
[2025-11-20 19:35:07] -rw------- 1 boinc boinc      8394 Nov 20 19:34 heartbeat.json
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc        23 Nov 20 19:34 wrapper_checkpoint.txt
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc      8192 Nov 20 19:34 boinc_mmap_file
[2025-11-20 19:35:07] -rw------- 1 boinc boinc      4752 Nov 20 19:35 pilotlog.txt
[2025-11-20 19:35:07] -rw------- 1 boinc boinc     91872 Nov 20 19:35 log.47523449._001481.job.log.1
[2025-11-20 19:35:07] -rw------- 1 boinc boinc       186 Nov 20 19:35 output.list
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc       620 Nov 20 19:35 runtime_log
[2025-11-20 19:35:07] -rw------- 1 boinc boinc    163840 Nov 20 19:35 result.tar.gz
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc      8744 Nov 20 19:35 runtime_log.err
[2025-11-20 19:35:07] -rw------- 1 boinc boinc       649 Nov 20 19:35 PxHKDm3uGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyIHKDmx2KYJn.diag
[2025-11-20 19:35:07] -rw-r--r-- 1 boinc boinc      9256 Nov 20 19:35 stderr.txt
[2025-11-20 19:35:07] No HITS result produced
[2025-11-20 19:35:07]  *** Contents of shared directory: ***
[2025-11-20 19:35:07] total 400560
[2025-11-20 19:35:07] -rw-r--r-- 2 boinc boinc 409391951 Nov 20 19:30 ATLAS.root_0
[2025-11-20 19:35:07] -rw-r--r-- 2 boinc boinc    590098 Nov 20 19:30 input.tar.gz
[2025-11-20 19:35:07] -rw-r--r-- 2 boinc boinc     15847 Nov 20 19:30 start_atlas.sh
[2025-11-20 19:35:07] -rw------- 1 boinc boinc    163840 Nov 20 19:35 result.tar.gz
19:35:08 (1621603): run_atlas exited; CPU time 31.716435
19:35:08 (1621603): called boinc_finish(0)

</stderr_txt>
]]>

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