Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:23:48 (942649): wrapper (7.7.26015): starting
13:23:48 (942649): wrapper: running run_atlas (--nthreads 3)
[2025-11-23 13:23:48] Arguments: --nthreads 3
[2025-11-23 13:23:48] Threads: 3
[2025-11-23 13:23:48] Checking for CVMFS
[2025-11-23 13:23:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 13:23:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 13:23:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 13:23:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 13:23:48] 2.9.2.0 3713072 4355 54948 153209 3 81 8449875 36864001 1953 130560 0 2279822 99.980 260526 7508 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 13:23:48] CVMFS is ok
[2025-11-23 13:23:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 13:23:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 13:23:48] Further information can be found at the LHC@home message board.
[2025-11-23 13:23:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 13:23:48] Checking for apptainer binary...
[2025-11-23 13:23:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 13:23:48] Running /usr/bin/apptainer --version
[2025-11-23 13:23:48] apptainer version 1.4.1-1.1
[2025-11-23 13:23:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 13:23:48] atlasA221b
[2025-11-23 13:23:48] apptainer works
[2025-11-23 13:23:48] Set ATHENA_PROC_NUMBER=3
[2025-11-23 13:23:48] Set ATHENA_CORE_NUMBER=3
[2025-11-23 13:23:48] Starting ATLAS job with PandaID=6893851938
[2025-11-23 13:23:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 22:59:55]  *** The last 200 lines of the pilot log: ***
[2025-11-23 22:59:55] 2025-11-23 21:59:27,085 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 22:59:55] 2025-11-23 21:59:27,085 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 22:59:55] 2025-11-23 21:59:27,085 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 22:59:55] 2025-11-23 21:59:27,085 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 22:59:55] 2025-11-23 21:59:27,085 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 22:59:55] 2025-11-23 21:59:27,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 22:59:55] 2025-11-23 21:59:27,086 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 22:59:55] 2025-11-23 21:59:27,086 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 22:59:55] 2025-11-23 21:59:27,086 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 22:59:55] 2025-11-23 21:59:27,086 | INFO     | job 6893851938 has completed (purged errors)
[2025-11-23 22:59:55] 2025-11-23 21:59:27,086 | INFO     | overall cleanup function is called
[2025-11-23 22:59:55] 2025-11-23 21:59:28,103 | INFO     | --- collectZombieJob: --- 10, [952847]
[2025-11-23 22:59:55] 2025-11-23 21:59:28,104 | INFO     | zombie collector waiting for pid 952847
[2025-11-23 22:59:55] 2025-11-23 21:59:28,104 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 22:59:55] 2025-11-23 21:59:28,104 | INFO     | collected zombie processes
[2025-11-23 22:59:55] 2025-11-23 21:59:28,104 | INFO     | will attempt to kill all subprocesses of pid=952847
[2025-11-23 22:59:55] 2025-11-23 21:59:28,162 | INFO     | process IDs to be killed: [952847] (in reverse order)
[2025-11-23 22:59:55] 2025-11-23 21:59:28,190 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 22:59:55] 2025-11-23 21:59:28,190 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 22:59:55] 2025-11-23 21:59:28,192 | INFO     | did not find any defunct processes belonging to 952847
[2025-11-23 22:59:55] 2025-11-23 21:59:28,194 | INFO     | did not find any defunct processes belonging to 952847
[2025-11-23 22:59:55] 2025-11-23 21:59:28,194 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 22:59:55] 2025-11-23 21:59:28,194 | INFO     | ready for new job
[2025-11-23 22:59:55] 2025-11-23 21:59:28,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 22:59:55] 2025-11-23 21:59:28,195 | INFO     | ***************************************
[2025-11-23 22:59:55] 2025-11-23 21:59:28,195 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 22:59:55] 2025-11-23 21:59:28,195 | INFO     | ***************************************
[2025-11-23 22:59:55] 2025-11-23 21:59:28,195 | INFO     | 
[2025-11-23 22:59:55] 2025-11-23 21:59:28,196 | INFO     | architecture information:
[2025-11-23 22:59:55] 2025-11-23 21:59:28,196 | INFO     | executing command: cat /etc/os-release
[2025-11-23 22:59:55] 2025-11-23 21:59:28,207 | INFO     | cat /etc/os-release:
[2025-11-23 22:59:55] NAME="CentOS Linux"
[2025-11-23 22:59:55] VERSION="7 (Core)"
[2025-11-23 22:59:55] ID="centos"
[2025-11-23 22:59:55] ID_LIKE="rhel fedora"
[2025-11-23 22:59:55] VERSION_ID="7"
[2025-11-23 22:59:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 22:59:55] ANSI_COLOR="0;31"
[2025-11-23 22:59:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 22:59:55] HOME_URL="https://www.centos.org/"
[2025-11-23 22:59:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 22:59:55] 
[2025-11-23 22:59:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 22:59:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 22:59:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 22:59:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 22:59:55] 
[2025-11-23 22:59:55] 2025-11-23 21:59:28,208 | INFO     | ***************************************
[2025-11-23 22:59:55] 2025-11-23 21:59:28,710 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 22:59:55] 2025-11-23 21:59:28,721 | INFO     | sufficient remaining disk space (100359208960 B)
[2025-11-23 22:59:55] 2025-11-23 21:59:28,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 22:59:55] 2025-11-23 21:59:28,721 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 22:59:55] 2025-11-23 21:59:28,721 | INFO     | update_server=False
[2025-11-23 22:59:55] 2025-11-23 21:59:28,721 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 22:59:55] 2025-11-23 21:59:28,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 22:59:55] 2025-11-23 21:59:28,722 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:59:55] 2025-11-23 21:59:28,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 22:59:55] 2025-11-23 21:59:28,722 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-23 22:59:55] 2025-11-23 21:59:28,722 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 22:59:55] 2025-11-23 21:59:28,722 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 22:59:55] 2025-11-23 21:59:28,722 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 22:59:55] 2025-11-23 21:59:29,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 22:59:55] 2025-11-23 21:59:29,197 | INFO     | aborting loop
[2025-11-23 22:59:55] 2025-11-23 21:59:29,268 | INFO     | all data control threads have been joined
[2025-11-23 22:59:55] 2025-11-23 21:59:29,313 | INFO     | all payload control threads have been joined
[2025-11-23 22:59:55] 2025-11-23 21:59:29,724 | INFO     | [job] retrieve thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:29,727 | INFO     | [job] queue monitor thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:29,937 | INFO     | [payload] validate_post thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,202 | INFO     | [job] job monitor thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,217 | INFO     | all job control threads have been joined
[2025-11-23 22:59:55] 2025-11-23 21:59:30,273 | INFO     | [data] control thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,318 | INFO     | [payload] control thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,578 | INFO     | [job] validate thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,687 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,727 | INFO     | [data] copytool_out thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,749 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,858 | INFO     | [data] copytool_in thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,907 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:30,936 | INFO     | [payload] failed_post thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:31,222 | INFO     | [job] control thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:32,728 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:39,024 | INFO     | job.realtimelogging is not enabled
[2025-11-23 22:59:55] 2025-11-23 21:59:40,029 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 22:59:55] 2025-11-23 21:59:50,555 | INFO     | [monitor] cgroup control has ended
[2025-11-23 22:59:55] 2025-11-23 21:59:50,596 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140190176479040)>', '<ExcThread(monitor, started 140189393475328)>']
[2025-11-23 22:59:55] 2025-11-23 21:59:50,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 22:59:55] 2025-11-23 21:59:50,832 | INFO     | [monitor] control thread has ended
[2025-11-23 22:59:55] 2025-11-23 21:59:55,621 | INFO     | all workflow threads have been joined
[2025-11-23 22:59:55] 2025-11-23 21:59:55,621 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 22:59:55] 2025-11-23 21:59:55,621 | INFO     | traces error code: 0
[2025-11-23 22:59:55] 2025-11-23 21:59:55,621 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 22:59:55] 2025-11-23 21:59:55,669 [wrapper] ==== pilot stdout END ====
[2025-11-23 22:59:55] 2025-11-23 21:59:55,673 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 22:59:55] 2025-11-23 21:59:55,676 [wrapper] pilotpid: 946374
[2025-11-23 22:59:55] 2025-11-23 21:59:55,680 [wrapper] Pilot exit status: 0
[2025-11-23 22:59:55] 2025-11-23 21:59:55,703 [wrapper] pandaids: 6893851938
[2025-11-23 22:59:55] 2025-11-23 21:59:55,724 [wrapper] cleanup supervisor_pilot 1064490 946375
[2025-11-23 22:59:55] 2025-11-23 21:59:55,727 [wrapper] Test setup, not cleaning
[2025-11-23 22:59:55] 2025-11-23 21:59:55,731 [wrapper] apfmon messages muted
[2025-11-23 22:59:55] 2025-11-23 21:59:55,734 [wrapper] ==== wrapper stdout END ====
[2025-11-23 22:59:55] 2025-11-23 21:59:55,738 [wrapper] ==== wrapper stderr END ====
[2025-11-23 22:59:55]  *** Error codes and diagnostics ***
[2025-11-23 22:59:55]     "exeErrorCode": 0,
[2025-11-23 22:59:55]     "exeErrorDiag": "",
[2025-11-23 22:59:55]     "pilotErrorCode": 0,
[2025-11-23 22:59:55]     "pilotErrorDiag": "",
[2025-11-23 22:59:55]  *** Listing of results directory ***
[2025-11-23 22:59:55] total 1318940
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-23 22:59:55] -rwx------ 1 boinc boinc     36292 Nov 20 12:43 runpilot2-wrapper.sh
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:43 queuedata.json
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc       100 Nov 23 13:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 22:59:55] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 13:23 run_atlas
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc       105 Nov 23 13:23 job.xml
[2025-11-23 22:59:55] -rw-r--r-- 2 boinc boinc 411328487 Nov 23 13:23 EVNT.47493127._000359.pool.root.1
[2025-11-23 22:59:55] drwxrwx--x 2 boinc boinc      4096 Nov 23 13:23 shared
[2025-11-23 22:59:55] -rw-r--r-- 2 boinc boinc    590097 Nov 23 13:23 input.tar.gz
[2025-11-23 22:59:55] -rw-r--r-- 2 boinc boinc     15847 Nov 23 13:23 start_atlas.sh
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc         0 Nov 23 13:23 boinc_setup_complete
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc      6200 Nov 23 13:23 init_data.xml
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc         0 Nov 23 13:23 boinc_lockfile
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc      2786 Nov 23 13:23 pandaJob.out
[2025-11-23 22:59:55] -rw------- 1 boinc boinc    989784 Nov 23 13:23 agis_schedconf.cvmfs.json
[2025-11-23 22:59:55] drwx------ 5 boinc boinc      4096 Nov 23 13:23 pilot3
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc       532 Nov 23 22:54 boinc_task_state.xml
[2025-11-23 22:59:55] -rw------- 1 boinc boinc 923232149 Nov 23 22:58 HITS.47523449._003583.pool.root.1
[2025-11-23 22:59:55] -rw------- 1 boinc boinc      1048 Nov 23 22:59 memory_monitor_summary.json
[2025-11-23 22:59:55] -rw------- 1 boinc boinc        95 Nov 23 22:59 pilot_heartbeat.json
[2025-11-23 22:59:55] -rw------- 1 boinc boinc   1526164 Nov 23 22:59 agis_ddmendpoints.agis.ALL.json
[2025-11-23 22:59:55] -rw------- 1 boinc boinc   1238671 Nov 23 22:59 log.47523449._003583.job.log.tgz.1
[2025-11-23 22:59:55] -rw------- 1 boinc boinc      8609 Nov 23 22:59 heartbeat.json
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc        29 Nov 23 22:59 wrapper_checkpoint.txt
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc      8192 Nov 23 22:59 boinc_mmap_file
[2025-11-23 22:59:55] -rw------- 1 boinc boinc      4628 Nov 23 22:59 pilotlog.txt
[2025-11-23 22:59:55] -rw------- 1 boinc boinc   4824222 Nov 23 22:59 log.47523449._003583.job.log.1
[2025-11-23 22:59:55] -rw------- 1 boinc boinc       353 Nov 23 22:59 output.list
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc       620 Nov 23 22:59 runtime_log
[2025-11-23 22:59:55] -rw------- 1 boinc boinc   6082560 Nov 23 22:59 result.tar.gz
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc      8918 Nov 23 22:59 runtime_log.err
[2025-11-23 22:59:55] -rw------- 1 boinc boinc       676 Nov 23 22:59 YlcNDmUFIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5eHKDmUY3U9n.diag
[2025-11-23 22:59:55] -rw-r--r-- 1 boinc boinc     11960 Nov 23 22:59 stderr.txt
[2025-11-23 22:59:55] HITS file was successfully produced:
[2025-11-23 22:59:55] -rw------- 1 boinc boinc 923232149 Nov 23 22:58 shared/HITS.pool.root.1
[2025-11-23 22:59:55]  *** Contents of shared directory: ***
[2025-11-23 22:59:55] total 1309828
[2025-11-23 22:59:55] -rw-r--r-- 2 boinc boinc 411328487 Nov 23 13:23 ATLAS.root_0
[2025-11-23 22:59:55] -rw-r--r-- 2 boinc boinc    590097 Nov 23 13:23 input.tar.gz
[2025-11-23 22:59:55] -rw-r--r-- 2 boinc boinc     15847 Nov 23 13:23 start_atlas.sh
[2025-11-23 22:59:55] -rw------- 1 boinc boinc 923232149 Nov 23 22:58 HITS.pool.root.1
[2025-11-23 22:59:55] -rw------- 1 boinc boinc   6082560 Nov 23 22:59 result.tar.gz
22:59:57 (942649): run_atlas exited; CPU time 102416.967760
22:59:57 (942649): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN