Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:17:07 (3400817): wrapper (7.7.26015): starting
10:17:07 (3400817): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 10:17:07] Arguments: --nthreads 12
[2025-11-20 10:17:07] Threads: 12
[2025-11-20 10:17:07] Checking for CVMFS
[2025-11-20 10:17:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 10:17:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 10:17:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 10:17:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 10:17:07] 2.11.5.0 440617 19995 346788 153091 3 650 43418909 45568001 10874 130560 0 214772547 99.798 132791864 25892 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 10:17:07] CVMFS is ok
[2025-11-20 10:17:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 10:17:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 10:17:07] Further information can be found at the LHC@home message board.
[2025-11-20 10:17:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 10:17:07] Checking for apptainer binary...
[2025-11-20 10:17:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 10:17:07] Running /usr/bin/apptainer --version
[2025-11-20 10:17:07] apptainer version 1.4.1-1.el9
[2025-11-20 10:17:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 10:17:07] wns0091.triumf.lcg
[2025-11-20 10:17:07] apptainer works
[2025-11-20 10:17:07] Set ATHENA_PROC_NUMBER=12
[2025-11-20 10:17:07] Set ATHENA_CORE_NUMBER=12
[2025-11-20 10:17:07] Starting ATLAS job with PandaID=6893862014
[2025-11-20 10:17:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 10:21:32]  *** The last 200 lines of the pilot log: ***
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 10:21:32] 2025-11-20 18:20:58,544 | WARNING  | wrong length of table data, x=[1763662668.0, 1763662729.0], y=[1273.0, 252074.0] (must be same and length>=4)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | could have reported an average CPU frequency of 2520 MHz (4 samples)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | ..............................
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . Timing measurements:
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . get job = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . initial setup = 2 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . payload setup = 6 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . stage-in = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . payload execution = 68 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . stage-out = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . log creation = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | ..............................
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 10:21:32] 2025-11-20 18:20:58,546 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893862014/pilotlog.txt
[2025-11-20 10:21:32] 2025-11-20 18:20:58,561 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 10:21:32] - Log from pilotlog.txt -
[2025-11-20 10:21:32] 2025-11-20 18:20:58,542 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893862014/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | INFO     | extracted standard info from prmon json
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 10:21:32] 2025-11-20 18:20:58,544 | WARNING  | wrong length of table data, x=[1763662668.0, 1763662729.0], y=[1273.0, 252074.0] (must be same and length>=4)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | could have reported an average CPU frequency of 2520 MHz (4 samples)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | ..............................
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . Timing measurements:
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . get job = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . initial setup = 2 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . payload setup = 6 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . stage-in = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . payload execution = 68 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . stage-out = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . log creation = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | ..............................
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 10:21:32] 2025-11-20 18:20:58,546 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893862014/pilotlog.txt
[2025-11-20 10:21:32] 2025-11-20 18:20:58,561 | WARNING  | 
[2025-11-20 10:21:32] [begin log extracts]
[2025-11-20 10:21:32] - Log from pilotlog.txt -
[2025-11-20 10:21:32] 2025-11-20 18:20:58,542 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893862014/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | INFO     | extracted standard info from prmon json
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 10:21:32] 2025-11-20 18:20:58,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 10:21:32] 2025-11-20 18:20:58,544 | WARNING  | wrong length of table data, x=[1763662668.0, 1763662729.0], y=[1273.0, 252074.0] (must be same and length>=4)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | could have reported an average CPU frequency of 2520 MHz (4 samples)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | ..............................
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . Timing measurements:
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . get job = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . initial setup = 2 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . payload setup = 6 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . stage-in = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . payload execution = 68 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . stage-out = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | . log creation = 0 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | ..............................
[2025-11-20 10:21:32] 2025-11-20 18:20:58,545 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 10:21:32] 2025-11-20 18:20:58,546 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893862014/pilotlog.txt
[2025-11-20 10:21:32] [end log extracts]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,561 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,562 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 10:21:32] 2025-11-20 18:20:58,931 | INFO     | 
[2025-11-20 10:21:32] 2025-11-20 18:20:58,931 | INFO     | job summary report
[2025-11-20 10:21:32] 2025-11-20 18:20:58,932 | INFO     | --------------------------------------------------
[2025-11-20 10:21:32] 2025-11-20 18:20:58,932 | INFO     | PanDA job id: 6893862014
[2025-11-20 10:21:32] 2025-11-20 18:20:58,932 | INFO     | task id: 47523449
[2025-11-20 10:21:32] 2025-11-20 18:20:58,932 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 10:18:46,651 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | pilot state: failed 
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | transexitcode: 65
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | exeerrorcode: 65
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | exitcode: 65
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | cpuconsumptiontime: 47 s
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | nevents: 0
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | neventsw: 0
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | pid: 3411021
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | pgrp: 3411021
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | corecount: 12
[2025-11-20 10:21:32] 2025-11-20 18:20:58,933 | INFO     | event service: False
[2025-11-20 10:21:32] 2025-11-20 18:20:58,934 | INFO     | sizes: {0: 2297979, 1: 2298832, 6: 2299094, 11: 2299122, 78: 2324575, 79: 2328865, 81: 2329049, 204: 2329215}
[2025-11-20 10:21:32] 2025-11-20 18:20:58,934 | INFO     | --------------------------------------------------
[2025-11-20 10:21:32] 2025-11-20 18:20:58,934 | INFO     | 
[2025-11-20 10:21:32] 2025-11-20 18:20:58,934 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 10:21:32] 2025-11-20 18:20:58,952 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,952 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,952 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,952 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,952 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 10:21:32] 2025-11-20 18:20:58,953 | INFO     | job 6893862014 has completed (purged errors)
[2025-11-20 10:21:32] 2025-11-20 18:20:58,954 | INFO     | overall cleanup function is called
[2025-11-20 10:21:32] 2025-11-20 18:20:59,960 | INFO     | --- collectZombieJob: --- 10, [3411021]
[2025-11-20 10:21:32] 2025-11-20 18:20:59,961 | INFO     | zombie collector waiting for pid 3411021
[2025-11-20 10:21:32] 2025-11-20 18:20:59,961 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 10:21:32] 2025-11-20 18:20:59,961 | INFO     | collected zombie processes
[2025-11-20 10:21:32] 2025-11-20 18:20:59,961 | INFO     | will attempt to kill all subprocesses of pid=3411021
[2025-11-20 10:21:32] 2025-11-20 18:21:00,125 | INFO     | process IDs to be killed: [3411021] (in reverse order)
[2025-11-20 10:21:32] 2025-11-20 18:21:00,199 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 10:21:32] 2025-11-20 18:21:00,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 10:21:32] 2025-11-20 18:21:00,206 | INFO     | did not find any defunct processes belonging to 3411021
[2025-11-20 10:21:32] 2025-11-20 18:21:00,213 | INFO     | did not find any defunct processes belonging to 3411021
[2025-11-20 10:21:32] 2025-11-20 18:21:00,214 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 10:21:32] 2025-11-20 18:21:00,214 | INFO     | ready for new job
[2025-11-20 10:21:32] 2025-11-20 18:21:00,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 10:21:32] 2025-11-20 18:21:00,216 | INFO     | ***************************************
[2025-11-20 10:21:32] 2025-11-20 18:21:00,216 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 10:21:32] 2025-11-20 18:21:00,216 | INFO     | ***************************************
[2025-11-20 10:21:32] 2025-11-20 18:21:00,216 | INFO     | 
[2025-11-20 10:21:32] 2025-11-20 18:21:00,218 | INFO     | architecture information:
[2025-11-20 10:21:32] 2025-11-20 18:21:00,218 | INFO     | executing command: cat /etc/os-release
[2025-11-20 10:21:32] 2025-11-20 18:21:00,229 | INFO     | cat /etc/os-release:
[2025-11-20 10:21:32] NAME="CentOS Linux"
[2025-11-20 10:21:32] VERSION="7 (Core)"
[2025-11-20 10:21:32] ID="centos"
[2025-11-20 10:21:32] ID_LIKE="rhel fedora"
[2025-11-20 10:21:32] VERSION_ID="7"
[2025-11-20 10:21:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 10:21:32] ANSI_COLOR="0;31"
[2025-11-20 10:21:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 10:21:32] HOME_URL="https://www.centos.org/"
[2025-11-20 10:21:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 10:21:32] 
[2025-11-20 10:21:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 10:21:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 10:21:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 10:21:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 10:21:32] 
[2025-11-20 10:21:32] 2025-11-20 18:21:00,230 | INFO     | ***************************************
[2025-11-20 10:21:32] 2025-11-20 18:21:00,733 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 10:21:32] 2025-11-20 18:21:00,750 | INFO     | sufficient remaining disk space (2010143260672 B)
[2025-11-20 10:21:32] 2025-11-20 18:21:00,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 10:21:32] 2025-11-20 18:21:00,751 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 10:21:32] 2025-11-20 18:21:00,751 | INFO     | update_server=False
[2025-11-20 10:21:32] 2025-11-20 18:21:00,751 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 10:21:32] 2025-11-20 18:21:00,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 10:21:32] 2025-11-20 18:21:00,751 | INFO     | aborting loop
[2025-11-20 10:21:32] 2025-11-20 18:21:01,189 | INFO     | all data control threads have been joined
[2025-11-20 10:21:32] 2025-11-20 18:21:01,238 | INFO     | all job control threads have been joined
[2025-11-20 10:21:32] 2025-11-20 18:21:01,756 | INFO     | [job] retrieve thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:01,757 | INFO     | [job] job monitor thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:01,893 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 10:21:32] 2025-11-20 18:21:01,978 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:02,105 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:02,130 | INFO     | [data] copytool_in thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:02,179 | INFO     | all payload control threads have been joined
[2025-11-20 10:21:32] 2025-11-20 18:21:02,195 | INFO     | [data] control thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:02,244 | INFO     | [job] control thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:02,709 | INFO     | [payload] failed_post thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:02,761 | INFO     | [payload] validate_post thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:02,990 | INFO     | [job] validate thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:03,148 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:03,185 | INFO     | [payload] control thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:03,233 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:03,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 10:21:32] 2025-11-20 18:21:03,630 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 10:21:32] 2025-11-20 18:21:03,898 | INFO     | [data] copytool_out thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:04,635 | INFO     | [job] queue monitor thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:07,625 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 10:21:32] 2025-11-20 18:21:19,262 | INFO     | [monitor] cgroup control has ended
[2025-11-20 10:21:32] 2025-11-20 18:21:21,361 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498468845376)>', '<ExcThread(monitor, started 140497632880384)>']
[2025-11-20 10:21:32] 2025-11-20 18:21:26,388 | INFO     | all workflow threads have been joined
[2025-11-20 10:21:32] 2025-11-20 18:21:26,388 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 10:21:32] 2025-11-20 18:21:26,389 | INFO     | traces error code: 0
[2025-11-20 10:21:32] 2025-11-20 18:21:26,389 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 10:21:32] 2025-11-20 18:21:31,761 | INFO     | PID=3404476 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 10:21:32] 2025-11-20 18:21:31,762 | INFO     | .. there are 21 such processes running
[2025-11-20 10:21:32] 2025-11-20 18:21:31,763 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 10:21:32] 2025-11-20 18:21:31,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 10:21:32] 2025-11-20 18:21:31,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 10:21:32] 2025-11-20 18:21:31,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 10:21:32] 2025-11-20 18:21:31,763 | INFO     | [monitor] control thread has ended
[2025-11-20 10:21:32] 2025-11-20 18:21:31,911 [wrapper] ==== pilot stdout END ====
[2025-11-20 10:21:32] 2025-11-20 18:21:31,914 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 10:21:32] 2025-11-20 18:21:31,917 [wrapper] pilotpid: 3404476
[2025-11-20 10:21:32] 2025-11-20 18:21:31,921 [wrapper] Pilot exit status: 0
[2025-11-20 10:21:32] 2025-11-20 18:21:31,935 [wrapper] pandaids: 6893862014
[2025-11-20 10:21:32] 2025-11-20 18:21:31,980 [wrapper] cleanup supervisor_pilot 3404482 3404477
[2025-11-20 10:21:32] 2025-11-20 18:21:31,984 [wrapper] Test setup, not cleaning
[2025-11-20 10:21:32] 2025-11-20 18:21:31,988 [wrapper] apfmon messages muted
[2025-11-20 10:21:32] 2025-11-20 18:21:31,991 [wrapper] ==== wrapper stdout END ====
[2025-11-20 10:21:32] 2025-11-20 18:21:31,993 [wrapper] ==== wrapper stderr END ====
[2025-11-20 10:21:32]  *** Error codes and diagnostics ***
[2025-11-20 10:21:32]     "exeErrorCode": 65,
[2025-11-20 10:21:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 10:21:32]     "pilotErrorCode": 1305,
[2025-11-20 10:21:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 10:21:32]  *** Listing of results directory ***
[2025-11-20 10:21:32] total 403112
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc    576529 Nov 20 06:06 pilot3.tar.gz
[2025-11-20 10:21:32] -rwx------. 1 boinc boinc     36292 Nov 20 06:07 runpilot2-wrapper.sh
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc      5112 Nov 20 06:07 queuedata.json
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc       100 Nov 20 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 10:21:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 10:17 run_atlas
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc       105 Nov 20 10:17 job.xml
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc      6595 Nov 20 10:17 init_data.xml
[2025-11-20 10:21:32] -rw-r--r--. 2 boinc boinc 408588180 Nov 20 10:17 EVNT.47493127._000586.pool.root.1
[2025-11-20 10:21:32] -rw-r--r--. 2 boinc boinc     15847 Nov 20 10:17 start_atlas.sh
[2025-11-20 10:21:32] drwxrwx--x. 2 boinc boinc      4096 Nov 20 10:17 shared
[2025-11-20 10:21:32] -rw-r--r--. 2 boinc boinc    590101 Nov 20 10:17 input.tar.gz
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc         0 Nov 20 10:17 boinc_lockfile
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc      2786 Nov 20 10:17 pandaJob.out
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc    989472 Nov 20 10:17 agis_schedconf.cvmfs.json
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc   1526164 Nov 20 10:17 agis_ddmendpoints.agis.ALL.json
[2025-11-20 10:21:32] drwx------. 5 boinc boinc      4096 Nov 20 10:17 pilot3
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc       523 Nov 20 10:18 boinc_task_state.xml
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc       996 Nov 20 10:18 memory_monitor_summary.json
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc     49049 Nov 20 10:18 log.47523449._005858.job.log.tgz.1
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc     10333 Nov 20 10:20 heartbeat.json
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc        23 Nov 20 10:21 wrapper_checkpoint.txt
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc       823 Nov 20 10:21 pilotlog.txt
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc        95 Nov 20 10:21 pilot_heartbeat.json
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc      8192 Nov 20 10:21 boinc_mmap_file
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc     94915 Nov 20 10:21 log.47523449._005858.job.log.1
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc       186 Nov 20 10:21 output.list
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc       620 Nov 20 10:21 runtime_log
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc    163840 Nov 20 10:21 result.tar.gz
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc      8636 Nov 20 10:21 runtime_log.err
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc       645 Nov 20 10:21 OhSKDmNVKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmG2HKDmYZ64Rm.diag
[2025-11-20 10:21:32] -rw-r--r--. 1 boinc boinc     22477 Nov 20 10:21 stderr.txt
[2025-11-20 10:21:32] No HITS result produced
[2025-11-20 10:21:32]  *** Contents of shared directory: ***
[2025-11-20 10:21:32] total 399772
[2025-11-20 10:21:32] -rw-r--r--. 2 boinc boinc 408588180 Nov 20 10:17 ATLAS.root_0
[2025-11-20 10:21:32] -rw-r--r--. 2 boinc boinc     15847 Nov 20 10:17 start_atlas.sh
[2025-11-20 10:21:32] -rw-r--r--. 2 boinc boinc    590101 Nov 20 10:17 input.tar.gz
[2025-11-20 10:21:32] -rw-------. 1 boinc boinc    163840 Nov 20 10:21 result.tar.gz
10:21:33 (3400817): run_atlas exited; CPU time 43.195997
10:21:33 (3400817): called boinc_finish(0)

</stderr_txt>
]]>

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