Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:00:07 (1475615): wrapper (7.7.26015): starting
19:00:07 (1475615): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 19:00:07] Arguments: --nthreads 3
[2025-11-20 19:00:07] Threads: 3
[2025-11-20 19:00:07] Checking for CVMFS
[2025-11-20 19:00:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 19:00:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 19:00:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 19:00:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 19:00:07] 2.9.2.0 16720 307 67128 153088 1 88 34405804 36864000 0 130560 0 4384900 99.999 9585 9198 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 19:00:07] CVMFS is ok
[2025-11-20 19:00:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 19:00:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 19:00:07] Further information can be found at the LHC@home message board.
[2025-11-20 19:00:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 19:00:07] Checking for apptainer binary...
[2025-11-20 19:00:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 19:00:07] Running /usr/bin/apptainer --version
[2025-11-20 19:00:07] apptainer version 1.4.1-1.1
[2025-11-20 19:00:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 19:00:07] thA335
[2025-11-20 19:00:07] apptainer works
[2025-11-20 19:00:08] Set ATHENA_PROC_NUMBER=3
[2025-11-20 19:00:08] Set ATHENA_CORE_NUMBER=3
[2025-11-20 19:00:08] Starting ATLAS job with PandaID=6893851186
[2025-11-20 19:00:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:04:25]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:04:25] 2025-11-20 18:03:32,851 | INFO     | ***************************************
[2025-11-20 19:04:25] 2025-11-20 18:03:33,355 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 19:04:25] 2025-11-20 18:03:33,369 | INFO     | sufficient remaining disk space (827644182528 B)
[2025-11-20 19:04:25] 2025-11-20 18:03:33,369 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:04:25] 2025-11-20 18:03:33,369 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:04:25] 2025-11-20 18:03:33,369 | INFO     | update_server=False
[2025-11-20 19:04:25] 2025-11-20 18:03:33,369 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:04:25] 2025-11-20 18:03:33,369 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:04:25] 2025-11-20 18:03:33,369 | INFO     | aborting loop
[2025-11-20 19:04:25] 2025-11-20 18:03:33,369 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:04:25] 2025-11-20 18:03:34,171 | INFO     | all data control threads have been joined
[2025-11-20 19:04:25] 2025-11-20 18:03:34,175 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:04:25] 2025-11-20 18:03:34,374 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:34,375 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:34,376 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:34,466 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:34,504 | INFO     | all payload control threads have been joined
[2025-11-20 19:04:25] 2025-11-20 18:03:35,026 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:35,071 | INFO     | all job control threads have been joined
[2025-11-20 19:04:25] 2025-11-20 18:03:35,102 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:35,177 | INFO     | [data] control thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:35,326 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:35,471 | INFO     | [job] validate thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:35,510 | INFO     | [payload] control thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:35,550 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:35,605 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:35,624 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:36,077 | INFO     | [job] control thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:36,153 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:04:25] 2025-11-20 18:03:36,181 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:03:40,160 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:04:25] 2025-11-20 18:04:03,640 | INFO     | PID=1479352 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 19:04:25] 2025-11-20 18:04:03,640 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:04:25] 2025-11-20 18:04:03,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:04:25] 2025-11-20 18:04:03,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:04:25] 2025-11-20 18:04:18,763 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:04:25] 2025-11-20 18:04:19,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651490801472)>', '<ExcThread(monitor, started 140651135997696)>']
[2025-11-20 19:04:25] 2025-11-20 18:04:20,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:04:25] 2025-11-20 18:04:20,730 | INFO     | [monitor] control thread has ended
[2025-11-20 19:04:25] 2025-11-20 18:04:25,024 | INFO     | all workflow threads have been joined
[2025-11-20 19:04:25] 2025-11-20 18:04:25,024 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:04:25] 2025-11-20 18:04:25,025 | INFO     | traces error code: 0
[2025-11-20 19:04:25] 2025-11-20 18:04:25,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:04:25] 2025-11-20 18:04:25,072 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:04:25] 2025-11-20 18:04:25,075 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:04:25] 2025-11-20 18:04:25,078 [wrapper] pilotpid: 1479352
[2025-11-20 19:04:25] 2025-11-20 18:04:25,081 [wrapper] Pilot exit status: 0
[2025-11-20 19:04:25] 2025-11-20 18:04:25,088 [wrapper] pandaids: 6893851186
[2025-11-20 19:04:25] 2025-11-20 18:04:25,105 [wrapper] cleanup supervisor_pilot 1479358 1479353
[2025-11-20 19:04:25] 2025-11-20 18:04:25,108 [wrapper] Test setup, not cleaning
[2025-11-20 19:04:25] 2025-11-20 18:04:25,110 [wrapper] apfmon messages muted
[2025-11-20 19:04:25] 2025-11-20 18:04:25,113 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:04:25] 2025-11-20 18:04:25,115 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:04:25]  *** Error codes and diagnostics ***
[2025-11-20 19:04:25]     "exeErrorCode": 65,
[2025-11-20 19:04:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 19:04:25]     "pilotErrorCode": 1305,
[2025-11-20 19:04:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 19:04:25]  *** Listing of results directory ***
[2025-11-20 19:04:25] total 405344
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-20 19:04:25] -rwx------ 1 boinc boinc     36292 Nov 20 12:35 runpilot2-wrapper.sh
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:35 queuedata.json
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc       100 Nov 20 19:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:04:25] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 19:00 run_atlas
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc       105 Nov 20 19:00 job.xml
[2025-11-20 19:04:25] -rw-r--r-- 2 boinc boinc 410876284 Nov 20 19:00 EVNT.47493127._000351.pool.root.1
[2025-11-20 19:04:25] -rw-r--r-- 2 boinc boinc    590100 Nov 20 19:00 input.tar.gz
[2025-11-20 19:04:25] -rw-r--r-- 2 boinc boinc     15847 Nov 20 19:00 start_atlas.sh
[2025-11-20 19:04:25] drwxrwx--x 2 boinc boinc      4096 Nov 20 19:00 shared
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc         0 Nov 20 19:00 boinc_setup_complete
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc      6194 Nov 20 19:00 init_data.xml
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc         0 Nov 20 19:00 boinc_lockfile
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc      2783 Nov 20 19:00 pandaJob.out
[2025-11-20 19:04:25] -rw------- 1 boinc boinc    989440 Nov 20 19:00 agis_schedconf.cvmfs.json
[2025-11-20 19:04:25] -rw------- 1 boinc boinc   1526164 Nov 20 19:00 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:04:25] drwx------ 5 boinc boinc      4096 Nov 20 19:00 pilot3
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc       523 Nov 20 19:01 boinc_task_state.xml
[2025-11-20 19:04:25] -rw------- 1 boinc boinc       959 Nov 20 19:01 memory_monitor_summary.json
[2025-11-20 19:04:25] -rw------- 1 boinc boinc     55699 Nov 20 19:01 log.47523449._003501.job.log.tgz.1
[2025-11-20 19:04:25] -rw------- 1 boinc boinc        95 Nov 20 19:03 pilot_heartbeat.json
[2025-11-20 19:04:25] -rw------- 1 boinc boinc      8399 Nov 20 19:03 heartbeat.json
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc      8192 Nov 20 19:04 boinc_mmap_file
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc        22 Nov 20 19:04 wrapper_checkpoint.txt
[2025-11-20 19:04:25] -rw------- 1 boinc boinc      4752 Nov 20 19:04 pilotlog.txt
[2025-11-20 19:04:25] -rw------- 1 boinc boinc     93433 Nov 20 19:04 log.47523449._003501.job.log.1
[2025-11-20 19:04:25] -rw------- 1 boinc boinc       186 Nov 20 19:04 output.list
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc       620 Nov 20 19:04 runtime_log
[2025-11-20 19:04:25] -rw------- 1 boinc boinc    163840 Nov 20 19:04 result.tar.gz
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc      8744 Nov 20 19:04 runtime_log.err
[2025-11-20 19:04:25] -rw------- 1 boinc boinc       648 Nov 20 19:04 GvVLDma7Hg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNeHKDmLwpOxm.diag
[2025-11-20 19:04:25] -rw-r--r-- 1 boinc boinc      8333 Nov 20 19:04 stderr.txt
[2025-11-20 19:04:25] No HITS result produced
[2025-11-20 19:04:25]  *** Contents of shared directory: ***
[2025-11-20 19:04:25] total 402008
[2025-11-20 19:04:25] -rw-r--r-- 2 boinc boinc 410876284 Nov 20 19:00 ATLAS.root_0
[2025-11-20 19:04:25] -rw-r--r-- 2 boinc boinc    590100 Nov 20 19:00 input.tar.gz
[2025-11-20 19:04:25] -rw-r--r-- 2 boinc boinc     15847 Nov 20 19:00 start_atlas.sh
[2025-11-20 19:04:25] -rw------- 1 boinc boinc    163840 Nov 20 19:04 result.tar.gz
19:04:27 (1475615): run_atlas exited; CPU time 31.654813
19:04:27 (1475615): called boinc_finish(0)

</stderr_txt>
]]>

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