Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:08:26 (822082): wrapper (7.7.26015): starting
10:08:26 (822082): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 10:08:26] Arguments: --nthreads 12
[2025-11-20 10:08:26] Threads: 12
[2025-11-20 10:08:26] Checking for CVMFS
[2025-11-20 10:08:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 10:08:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 10:08:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 10:08:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 10:08:27] 2.11.5.0 956277 19798 182084 153091 2 304 43922039 45568001 11040 130560 0 216652725 99.824 113424344 25482 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 10:08:27] CVMFS is ok
[2025-11-20 10:08:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 10:08:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 10:08:27] Further information can be found at the LHC@home message board.
[2025-11-20 10:08:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 10:08:27] Checking for apptainer binary...
[2025-11-20 10:08:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 10:08:27] Running /usr/bin/apptainer --version
[2025-11-20 10:08:27] apptainer version 1.4.1-1.el9
[2025-11-20 10:08:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 10:08:27] wns0084.triumf.lcg
[2025-11-20 10:08:27] apptainer works
[2025-11-20 10:08:27] Set ATHENA_PROC_NUMBER=12
[2025-11-20 10:08:27] Set ATHENA_CORE_NUMBER=12
[2025-11-20 10:08:27] Starting ATLAS job with PandaID=6893861622
[2025-11-20 10:08:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 10:12:43]  *** The last 200 lines of the pilot log: ***
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | could have reported an average CPU frequency of 2541 MHz (4 samples)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | ..............................
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . Timing measurements:
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . get job = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . initial setup = 2 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . payload setup = 4 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . stage-in = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . payload execution = 51 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . stage-out = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . log creation = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | ..............................
[2025-11-20 10:12:43] 2025-11-20 18:11:51,156 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 10:12:43] 2025-11-20 18:11:51,156 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893861622/pilotlog.txt
[2025-11-20 10:12:43] 2025-11-20 18:11:51,166 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 10:12:43] - Log from pilotlog.txt -
[2025-11-20 10:12:43] 2025-11-20 18:11:51,153 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893861622/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,153 | INFO     | extracted standard info from prmon json
[2025-11-20 10:12:43] 2025-11-20 18:11:51,153 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 10:12:43] 2025-11-20 18:11:51,153 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 10:12:43] 2025-11-20 18:11:51,154 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 10:12:43] 2025-11-20 18:11:51,154 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 10:12:43] 2025-11-20 18:11:51,154 | WARNING  | wrong length of table data, x=[1763662142.0], y=[1482.0] (must be same and length>=4)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | could have reported an average CPU frequency of 2541 MHz (4 samples)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | ..............................
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . Timing measurements:
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . get job = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . initial setup = 2 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . payload setup = 4 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . stage-in = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . payload execution = 51 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . stage-out = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . log creation = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | ..............................
[2025-11-20 10:12:43] 2025-11-20 18:11:51,156 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 10:12:43] 2025-11-20 18:11:51,156 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893861622/pilotlog.txt
[2025-11-20 10:12:43] 2025-11-20 18:11:51,166 | WARNING  | 
[2025-11-20 10:12:43] [begin log extracts]
[2025-11-20 10:12:43] - Log from pilotlog.txt -
[2025-11-20 10:12:43] 2025-11-20 18:11:51,153 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893861622/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,153 | INFO     | extracted standard info from prmon json
[2025-11-20 10:12:43] 2025-11-20 18:11:51,153 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 10:12:43] 2025-11-20 18:11:51,153 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 10:12:43] 2025-11-20 18:11:51,154 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 10:12:43] 2025-11-20 18:11:51,154 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 10:12:43] 2025-11-20 18:11:51,154 | WARNING  | wrong length of table data, x=[1763662142.0], y=[1482.0] (must be same and length>=4)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | could have reported an average CPU frequency of 2541 MHz (4 samples)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | ..............................
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . Timing measurements:
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . get job = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . initial setup = 2 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . payload setup = 4 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . stage-in = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . payload execution = 51 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . stage-out = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | . log creation = 0 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,155 | INFO     | ..............................
[2025-11-20 10:12:43] 2025-11-20 18:11:51,156 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 10:12:43] 2025-11-20 18:11:51,156 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893861622/pilotlog.txt
[2025-11-20 10:12:43] [end log extracts]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,167 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,167 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | 
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | job summary report
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | --------------------------------------------------
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | PanDA job id: 6893861622
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | task id: 47523449
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 10:09:43,683 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 10:12:43] 2025-11-20 18:11:51,223 | INFO     | pilot state: failed 
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | transexitcode: 65
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | exeerrorcode: 65
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | exitcode: 65
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | cpuconsumptiontime: 41 s
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | nevents: 0
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | neventsw: 0
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | pid: 832314
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | pgrp: 832314
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | corecount: 12
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | event service: False
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | sizes: {0: 2298577, 1: 2298832, 5: 2299094, 11: 2299150, 60: 2328944, 180: 2329082}
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | --------------------------------------------------
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | 
[2025-11-20 10:12:43] 2025-11-20 18:11:51,224 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 10:12:43] 2025-11-20 18:11:51,238 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,238 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,238 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,238 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,238 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,238 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,238 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,238 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | job 6893861622 has completed (purged errors)
[2025-11-20 10:12:43] 2025-11-20 18:11:51,239 | INFO     | overall cleanup function is called
[2025-11-20 10:12:43] 2025-11-20 18:11:52,246 | INFO     | --- collectZombieJob: --- 10, [832314]
[2025-11-20 10:12:43] 2025-11-20 18:11:52,247 | INFO     | zombie collector waiting for pid 832314
[2025-11-20 10:12:43] 2025-11-20 18:11:52,247 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 10:12:43] 2025-11-20 18:11:52,247 | INFO     | collected zombie processes
[2025-11-20 10:12:43] 2025-11-20 18:11:52,247 | INFO     | will attempt to kill all subprocesses of pid=832314
[2025-11-20 10:12:43] 2025-11-20 18:11:52,416 | INFO     | process IDs to be killed: [832314] (in reverse order)
[2025-11-20 10:12:43] 2025-11-20 18:11:52,479 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 10:12:43] 2025-11-20 18:11:52,480 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 10:12:43] 2025-11-20 18:11:52,487 | INFO     | did not find any defunct processes belonging to 832314
[2025-11-20 10:12:43] 2025-11-20 18:11:52,494 | INFO     | did not find any defunct processes belonging to 832314
[2025-11-20 10:12:43] 2025-11-20 18:11:52,495 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 10:12:43] 2025-11-20 18:11:52,495 | INFO     | ready for new job
[2025-11-20 10:12:43] 2025-11-20 18:11:52,495 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 10:12:43] 2025-11-20 18:11:52,496 | INFO     | ***************************************
[2025-11-20 10:12:43] 2025-11-20 18:11:52,497 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 10:12:43] 2025-11-20 18:11:52,497 | INFO     | ***************************************
[2025-11-20 10:12:43] 2025-11-20 18:11:52,497 | INFO     | 
[2025-11-20 10:12:43] 2025-11-20 18:11:52,499 | INFO     | architecture information:
[2025-11-20 10:12:43] 2025-11-20 18:11:52,499 | INFO     | executing command: cat /etc/os-release
[2025-11-20 10:12:43] 2025-11-20 18:11:52,509 | INFO     | cat /etc/os-release:
[2025-11-20 10:12:43] NAME="CentOS Linux"
[2025-11-20 10:12:43] VERSION="7 (Core)"
[2025-11-20 10:12:43] ID="centos"
[2025-11-20 10:12:43] ID_LIKE="rhel fedora"
[2025-11-20 10:12:43] VERSION_ID="7"
[2025-11-20 10:12:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 10:12:43] ANSI_COLOR="0;31"
[2025-11-20 10:12:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 10:12:43] HOME_URL="https://www.centos.org/"
[2025-11-20 10:12:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 10:12:43] 
[2025-11-20 10:12:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 10:12:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 10:12:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 10:12:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 10:12:43] 
[2025-11-20 10:12:43] 2025-11-20 18:11:52,510 | INFO     | ***************************************
[2025-11-20 10:12:43] 2025-11-20 18:11:53,012 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 10:12:43] 2025-11-20 18:11:53,023 | INFO     | sufficient remaining disk space (2057320792064 B)
[2025-11-20 10:12:43] 2025-11-20 18:11:53,023 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 10:12:43] 2025-11-20 18:11:53,023 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 10:12:43] 2025-11-20 18:11:53,023 | INFO     | update_server=False
[2025-11-20 10:12:43] 2025-11-20 18:11:53,023 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 10:12:43] 2025-11-20 18:11:53,024 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 10:12:43] 2025-11-20 18:11:53,077 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 10:12:43] 2025-11-20 18:11:53,077 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 10:12:43] 2025-11-20 18:11:53,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 10:12:43] 2025-11-20 18:11:53,077 | INFO     | will abort loop
[2025-11-20 10:12:43] 2025-11-20 18:11:53,143 | INFO     | all job control threads have been joined
[2025-11-20 10:12:43] 2025-11-20 18:11:53,252 | INFO     | all data control threads have been joined
[2025-11-20 10:12:43] 2025-11-20 18:11:54,029 | INFO     | [job] retrieve thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,029 | INFO     | [job] queue monitor thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,083 | INFO     | [job] job monitor thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,148 | INFO     | [job] control thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,163 | INFO     | [data] copytool_in thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,249 | INFO     | all payload control threads have been joined
[2025-11-20 10:12:43] 2025-11-20 18:11:54,257 | INFO     | [data] control thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,328 | INFO     | [payload] validate_post thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,356 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 10:12:43] 2025-11-20 18:11:54,356 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 10:12:43] 2025-11-20 18:11:54,680 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,713 | INFO     | [job] validate thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:54,858 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:55,098 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:55,255 | INFO     | [payload] control thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:55,448 | INFO     | [payload] failed_post thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:55,476 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:56,363 | INFO     | [data] copytool_out thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:11:58,364 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 10:12:43] 2025-11-20 18:12:22,677 | INFO     | PID=825747 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 10:12:43] 2025-11-20 18:12:22,677 | INFO     | .. there are 26 such processes running
[2025-11-20 10:12:43] 2025-11-20 18:12:22,677 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 10:12:43] 2025-11-20 18:12:22,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 10:12:43] 2025-11-20 18:12:22,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 10:12:43] 2025-11-20 18:12:36,237 | INFO     | [monitor] cgroup control has ended
[2025-11-20 10:12:43] 2025-11-20 18:12:37,982 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592525137728)>', '<ExcThread(monitor, started 140591987943168)>']
[2025-11-20 10:12:43] 2025-11-20 18:12:38,769 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 10:12:43] 2025-11-20 18:12:38,770 | INFO     | [monitor] control thread has ended
[2025-11-20 10:12:43] 2025-11-20 18:12:43,007 | INFO     | all workflow threads have been joined
[2025-11-20 10:12:43] 2025-11-20 18:12:43,007 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 10:12:43] 2025-11-20 18:12:43,007 | INFO     | traces error code: 0
[2025-11-20 10:12:43] 2025-11-20 18:12:43,008 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 10:12:43] 2025-11-20 18:12:43,131 [wrapper] ==== pilot stdout END ====
[2025-11-20 10:12:43] 2025-11-20 18:12:43,133 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 10:12:43] 2025-11-20 18:12:43,138 [wrapper] pilotpid: 825747
[2025-11-20 10:12:43] 2025-11-20 18:12:43,141 [wrapper] Pilot exit status: 0
[2025-11-20 10:12:43] 2025-11-20 18:12:43,154 [wrapper] pandaids: 6893861622
[2025-11-20 10:12:43] 2025-11-20 18:12:43,199 [wrapper] cleanup supervisor_pilot  825753 825748
[2025-11-20 10:12:43] 2025-11-20 18:12:43,201 [wrapper] Test setup, not cleaning
[2025-11-20 10:12:43] 2025-11-20 18:12:43,206 [wrapper] apfmon messages muted
[2025-11-20 10:12:43] 2025-11-20 18:12:43,208 [wrapper] ==== wrapper stdout END ====
[2025-11-20 10:12:43] 2025-11-20 18:12:43,210 [wrapper] ==== wrapper stderr END ====
[2025-11-20 10:12:43]  *** Error codes and diagnostics ***
[2025-11-20 10:12:43]     "exeErrorCode": 65,
[2025-11-20 10:12:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 10:12:43]     "pilotErrorCode": 1305,
[2025-11-20 10:12:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 10:12:43]  *** Listing of results directory ***
[2025-11-20 10:12:43] total 402088
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc      5112 Nov 20 06:04 queuedata.json
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc    576529 Nov 20 06:04 pilot3.tar.gz
[2025-11-20 10:12:43] -rwx------. 1 boinc boinc     36292 Nov 20 06:04 runpilot2-wrapper.sh
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc       100 Nov 20 10:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 10:12:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 10:08 run_atlas
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc       105 Nov 20 10:08 job.xml
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc      6595 Nov 20 10:08 init_data.xml
[2025-11-20 10:12:43] -rw-r--r--. 2 boinc boinc 407536704 Nov 20 10:08 EVNT.47493127._000579.pool.root.1
[2025-11-20 10:12:43] -rw-r--r--. 2 boinc boinc     15847 Nov 20 10:08 start_atlas.sh
[2025-11-20 10:12:43] drwxrwx--x. 2 boinc boinc      4096 Nov 20 10:08 shared
[2025-11-20 10:12:43] -rw-r--r--. 2 boinc boinc    590097 Nov 20 10:08 input.tar.gz
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc         0 Nov 20 10:08 boinc_lockfile
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc      2786 Nov 20 10:08 pandaJob.out
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc    989472 Nov 20 10:08 agis_schedconf.cvmfs.json
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc   1526164 Nov 20 10:08 agis_ddmendpoints.agis.ALL.json
[2025-11-20 10:12:43] drwx------. 5 boinc boinc      4096 Nov 20 10:08 pilot3
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc       523 Nov 20 10:09 boinc_task_state.xml
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc       970 Nov 20 10:09 memory_monitor_summary.json
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc     47292 Nov 20 10:09 log.47523449._005785.job.log.tgz.1
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc        95 Nov 20 10:11 pilot_heartbeat.json
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc     10328 Nov 20 10:11 heartbeat.json
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc      5008 Nov 20 10:12 pilotlog.txt
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc        23 Nov 20 10:12 wrapper_checkpoint.txt
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc      8192 Nov 20 10:12 boinc_mmap_file
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc     92835 Nov 20 10:12 log.47523449._005785.job.log.1
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc       186 Nov 20 10:12 output.list
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc       620 Nov 20 10:12 runtime_log
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc    163840 Nov 20 10:12 result.tar.gz
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc      8636 Nov 20 10:12 runtime_log.err
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc       645 Nov 20 10:12 2J5KDmXSKg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmi1HKDmJ3ScBn.diag
[2025-11-20 10:12:43] -rw-r--r--. 1 boinc boinc     22351 Nov 20 10:12 stderr.txt
[2025-11-20 10:12:43] No HITS result produced
[2025-11-20 10:12:43]  *** Contents of shared directory: ***
[2025-11-20 10:12:43] total 398748
[2025-11-20 10:12:43] -rw-r--r--. 2 boinc boinc 407536704 Nov 20 10:08 ATLAS.root_0
[2025-11-20 10:12:43] -rw-r--r--. 2 boinc boinc     15847 Nov 20 10:08 start_atlas.sh
[2025-11-20 10:12:43] -rw-r--r--. 2 boinc boinc    590097 Nov 20 10:08 input.tar.gz
[2025-11-20 10:12:43] -rw-------. 1 boinc boinc    163840 Nov 20 10:12 result.tar.gz
10:12:45 (822082): run_atlas exited; CPU time 40.361731
10:12:45 (822082): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN