Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:44:32 (5333): wrapper (7.7.26015): starting
13:44:32 (5333): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 13:44:32] Arguments: --nthreads 8
[2025-11-23 13:44:32] Threads: 8
[2025-11-23 13:44:32] Checking for CVMFS
[2025-11-23 13:44:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 13:44:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 13:44:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 13:44:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 13:44:35] 2.11.2.0 22848 281030 143636 153209 3 85 23423282 25165824 4632 130560 2 143605177 99.886 76932211 3048 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 13:44:35] CVMFS is ok
[2025-11-23 13:44:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 13:44:35] Checking for apptainer binary...
[2025-11-23 13:44:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 13:44:35] Running /usr/bin/apptainer --version
[2025-11-23 13:44:35] apptainer version 1.3.2-1.el7
[2025-11-23 13:44:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 13:44:49] cg-vwn482.simple-grid.lan
[2025-11-23 13:44:49] apptainer works
[2025-11-23 13:44:49] Set ATHENA_PROC_NUMBER=8
[2025-11-23 13:44:49] Set ATHENA_CORE_NUMBER=8
[2025-11-23 13:44:49] Starting ATLAS job with PandaID=6893851328
[2025-11-23 13:44:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 10:11:01]  *** The last 200 lines of the pilot log: ***
[2025-11-24 10:11:01] 2025-11-24 09:10:07,618 | INFO     | chi2: 18.554861187999176
[2025-11-24 10:11:01] 2025-11-24 09:10:07,619 | INFO     | sum of square deviations: 519905307104.08936
[2025-11-24 10:11:01] 2025-11-24 09:10:07,660 | INFO     | sum of deviations: 4226642433190.0615
[2025-11-24 10:11:01] 2025-11-24 09:10:07,661 | INFO     | mean x: 1763938848.6809764
[2025-11-24 10:11:01] 2025-11-24 09:10:07,661 | INFO     | mean y: 2835338.2904040404
[2025-11-24 10:11:01] 2025-11-24 09:10:07,661 | INFO     | intersect: -14337350625.410053
[2025-11-24 10:11:01] 2025-11-24 09:10:07,662 | INFO     | chi2: 15.302913127165308
[2025-11-24 10:11:01] 2025-11-24 09:10:07,663 | INFO     | current chi2=15.302913127165308 (change=17.526124436528512 %)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,663 | INFO     | right removable region: 1187
[2025-11-24 10:11:01] 2025-11-24 09:10:07,664 | INFO     | sum of square deviations: 519904451274.08966
[2025-11-24 10:11:01] 2025-11-24 09:10:07,706 | INFO     | sum of deviations: 3320705355379.671
[2025-11-24 10:11:01] 2025-11-24 09:10:07,706 | INFO     | mean x: 1763939153.6809764
[2025-11-24 10:11:01] 2025-11-24 09:10:07,706 | INFO     | mean y: 2837441.48989899
[2025-11-24 10:11:01] 2025-11-24 09:10:07,706 | INFO     | intersect: -11263698514.94926
[2025-11-24 10:11:01] 2025-11-24 09:10:07,708 | INFO     | chi2: 13.622047569193471
[2025-11-24 10:11:01] 2025-11-24 09:10:07,708 | INFO     | current chi2=13.622047569193471 (change=26.58502032877576 %)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,709 | INFO     | sum of square deviations: 513367100787.0868
[2025-11-24 10:11:01] 2025-11-24 09:10:07,748 | INFO     | sum of deviations: 2870339151006.0874
[2025-11-24 10:11:01] 2025-11-24 09:10:07,748 | INFO     | mean x: 1763939306.185968
[2025-11-24 10:11:01] 2025-11-24 09:10:07,748 | INFO     | mean y: 2847947.3905325443
[2025-11-24 10:11:01] 2025-11-24 09:10:07,748 | INFO     | intersect: -9859692996.081345
[2025-11-24 10:11:01] 2025-11-24 09:10:07,750 | INFO     | chi2: 9.747186573109087
[2025-11-24 10:11:01] 2025-11-24 09:10:07,750 | INFO     | current chi2=9.747186573109087 (change=28.445510679668008 %)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,752 | INFO     | sum of square deviations: 506884774587.52454
[2025-11-24 10:11:01] 2025-11-24 09:10:07,792 | INFO     | sum of deviations: 2476984048500.463
[2025-11-24 10:11:01] 2025-11-24 09:10:07,793 | INFO     | mean x: 1763939458.6910017
[2025-11-24 10:11:01] 2025-11-24 09:10:07,793 | INFO     | mean y: 2857200.2979626483
[2025-11-24 10:11:01] 2025-11-24 09:10:07,793 | INFO     | intersect: -8616951720.286823
[2025-11-24 10:11:01] 2025-11-24 09:10:07,794 | INFO     | chi2: 6.891248408517094
[2025-11-24 10:11:01] 2025-11-24 09:10:07,795 | INFO     | current chi2=6.891248408517094 (change=29.300128228498927 %)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,796 | INFO     | sum of square deviations: 500457240112.90186
[2025-11-24 10:11:01] 2025-11-24 09:10:07,834 | INFO     | sum of deviations: 2103621979938.9849
[2025-11-24 10:11:01] 2025-11-24 09:10:07,834 | INFO     | mean x: 1763939611.1960785
[2025-11-24 10:11:01] 2025-11-24 09:10:07,834 | INFO     | mean y: 2866055.6044330774
[2025-11-24 10:11:01] 2025-11-24 09:10:07,834 | INFO     | intersect: -7411677765.482023
[2025-11-24 10:11:01] 2025-11-24 09:10:07,836 | INFO     | chi2: 4.303915687344406
[2025-11-24 10:11:01] 2025-11-24 09:10:07,836 | INFO     | current chi2=4.303915687344406 (change=37.54519599053965 %)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,838 | INFO     | sum of square deviations: 494084622326.7086
[2025-11-24 10:11:01] 2025-11-24 09:10:07,844 | INFO     | time since job start (73279s) is within the limit (172800.0s)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,875 | INFO     | sum of deviations: 1999909160619.1958
[2025-11-24 10:11:01] 2025-11-24 09:10:07,875 | INFO     | mean x: 1763939763.6969178
[2025-11-24 10:11:01] 2025-11-24 09:10:07,875 | INFO     | mean y: 2868537.2491438356
[2025-11-24 10:11:01] 2025-11-24 09:10:07,875 | INFO     | intersect: -7137040564.931445
[2025-11-24 10:11:01] 2025-11-24 09:10:07,877 | INFO     | chi2: 4.187225669288962
[2025-11-24 10:11:01] 2025-11-24 09:10:07,877 | INFO     | current chi2=4.187225669288962 (change=2.711252415993406 %)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,877 | INFO     | left removable region: 50
[2025-11-24 10:11:01] 2025-11-24 09:10:07,879 | INFO     | sum of square deviations: 455778765485.25244
[2025-11-24 10:11:01] 2025-11-24 09:10:07,913 | INFO     | sum of deviations: 2125701397857.913
[2025-11-24 10:11:01] 2025-11-24 09:10:07,914 | INFO     | mean x: 1763940343.2049253
[2025-11-24 10:11:01] 2025-11-24 09:10:07,914 | INFO     | mean y: 2886932.944591029
[2025-11-24 10:11:01] 2025-11-24 09:10:07,914 | INFO     | intersect: -8223934361.146615
[2025-11-24 10:11:01] 2025-11-24 09:10:07,916 | INFO     | chi2: 0.5463289838018333
[2025-11-24 10:11:01] 2025-11-24 09:10:07,916 | INFO     | current memory leak: 4.66 B/s (using 1137 data points, chi2=0.55)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,917 | INFO     | could have reported an average CPU frequency of 2249 MHz (41 samples)
[2025-11-24 10:11:01] 2025-11-24 09:10:07,917 | INFO     | ..............................
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | . Timing measurements:
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | . get job = 0 s
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | . initial setup = 11 s
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | . payload setup = 149 s
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | . stage-in = 0 s
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | . payload execution = 72919 s
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | . stage-out = 4 s
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | . log creation = 0 s
[2025-11-24 10:11:01] 2025-11-24 09:10:07,918 | INFO     | ..............................
[2025-11-24 10:11:01] 2025-11-24 09:10:08,130 | INFO     | 
[2025-11-24 10:11:01] 2025-11-24 09:10:08,130 | INFO     | job summary report
[2025-11-24 10:11:01] 2025-11-24 09:10:08,131 | INFO     | --------------------------------------------------
[2025-11-24 10:11:01] 2025-11-24 09:10:08,131 | INFO     | PanDA job id: 6893851328
[2025-11-24 10:11:01] 2025-11-24 09:10:08,131 | INFO     | task id: 47523449
[2025-11-24 10:11:01] 2025-11-24 09:10:08,131 | INFO     | errors: (none)
[2025-11-24 10:11:01] 2025-11-24 09:10:08,131 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 10:11:01] 2025-11-24 09:10:08,131 | INFO     | pilot state: finished 
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | transexitcode: 0
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | exeerrorcode: 0
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | exeerrordiag: 
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | exitcode: 0
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | exitmsg: OK
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | cpuconsumptiontime: 295960 s
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | nevents: 1000
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | neventsw: 0
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | pid: 15699
[2025-11-24 10:11:01] 2025-11-24 09:10:08,132 | INFO     | pgrp: 15699
[2025-11-24 10:11:01] 2025-11-24 09:10:08,133 | INFO     | corecount: 8
[2025-11-24 10:11:01] 2025-11-24 09:10:08,133 | INFO     | event service: False
[2025-11-24 10:11:01] 2025-11-24 09:10:08,133 | INFO     | sizes: {0: 2298579, 1: 2298834, 2: 2298834, 12: 2298862, 23: 2298890, 34: 2298918, 44: 2299074, 55: 2299102, 66: 2299130, 77: 2299158, 87: 2299214, 89: 2299784, 98
[2025-11-24 10:11:01] 2025-11-24 09:10:08,133 | INFO     | --------------------------------------------------
[2025-11-24 10:11:01] 2025-11-24 09:10:08,133 | INFO     | 
[2025-11-24 10:11:01] 2025-11-24 09:10:08,133 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-24 10:11:01] 2025-11-24 09:10:08,156 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,156 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,157 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,158 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 10:11:01] 2025-11-24 09:10:08,159 | INFO     | job 6893851328 has completed (purged errors)
[2025-11-24 10:11:01] 2025-11-24 09:10:08,159 | INFO     | overall cleanup function is called
[2025-11-24 10:11:01] 2025-11-24 09:10:09,175 | INFO     | --- collectZombieJob: --- 10, [15699]
[2025-11-24 10:11:01] 2025-11-24 09:10:09,176 | INFO     | zombie collector waiting for pid 15699
[2025-11-24 10:11:01] 2025-11-24 09:10:09,176 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 10:11:01] 2025-11-24 09:10:09,176 | INFO     | collected zombie processes
[2025-11-24 10:11:01] 2025-11-24 09:10:09,176 | INFO     | will attempt to kill all subprocesses of pid=15699
[2025-11-24 10:11:01] 2025-11-24 09:10:09,242 | INFO     | process IDs to be killed: [15699] (in reverse order)
[2025-11-24 10:11:01] 2025-11-24 09:10:09,293 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 10:11:01] 2025-11-24 09:10:09,294 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 10:11:01] 2025-11-24 09:10:09,296 | INFO     | did not find any defunct processes belonging to 15699
[2025-11-24 10:11:01] 2025-11-24 09:10:09,297 | INFO     | did not find any defunct processes belonging to 15699
[2025-11-24 10:11:01] 2025-11-24 09:10:09,299 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 10:11:01] 2025-11-24 09:10:09,299 | INFO     | ready for new job
[2025-11-24 10:11:01] 2025-11-24 09:10:09,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 10:11:01] 2025-11-24 09:10:09,304 | INFO     | ***************************************
[2025-11-24 10:11:01] 2025-11-24 09:10:09,304 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 10:11:01] 2025-11-24 09:10:09,304 | INFO     | ***************************************
[2025-11-24 10:11:01] 2025-11-24 09:10:09,304 | INFO     | 
[2025-11-24 10:11:01] 2025-11-24 09:10:09,305 | INFO     | pilot is running in a VM
[2025-11-24 10:11:01] 2025-11-24 09:10:09,305 | INFO     | architecture information:
[2025-11-24 10:11:01] 2025-11-24 09:10:09,306 | INFO     | executing command: cat /etc/os-release
[2025-11-24 10:11:01] 2025-11-24 09:10:09,325 | INFO     | cat /etc/os-release:
[2025-11-24 10:11:01] NAME="CentOS Linux"
[2025-11-24 10:11:01] VERSION="7 (Core)"
[2025-11-24 10:11:01] ID="centos"
[2025-11-24 10:11:01] ID_LIKE="rhel fedora"
[2025-11-24 10:11:01] VERSION_ID="7"
[2025-11-24 10:11:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 10:11:01] ANSI_COLOR="0;31"
[2025-11-24 10:11:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 10:11:01] HOME_URL="https://www.centos.org/"
[2025-11-24 10:11:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 10:11:01] 
[2025-11-24 10:11:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 10:11:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 10:11:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 10:11:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 10:11:01] 
[2025-11-24 10:11:01] 2025-11-24 09:10:09,326 | INFO     | ***************************************
[2025-11-24 10:11:01] 2025-11-24 09:10:09,829 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-24 10:11:01] 2025-11-24 09:10:09,847 | INFO     | sufficient remaining disk space (490572087296 B)
[2025-11-24 10:11:01] 2025-11-24 09:10:09,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 10:11:01] 2025-11-24 09:10:09,847 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 10:11:01] 2025-11-24 09:10:09,847 | INFO     | update_server=False
[2025-11-24 10:11:01] 2025-11-24 09:10:09,848 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 10:11:01] 2025-11-24 09:10:09,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:11:01] 2025-11-24 09:10:09,848 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 10:11:01] 2025-11-24 09:10:09,849 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-24 10:11:01] 2025-11-24 09:10:09,849 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 10:11:01] 2025-11-24 09:10:09,850 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 10:11:01] 2025-11-24 09:10:09,850 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 10:11:01] 2025-11-24 09:10:09,919 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 10:11:01] 2025-11-24 09:10:09,919 | INFO     | aborting loop
[2025-11-24 10:11:01] 2025-11-24 09:10:10,123 | INFO     | all payload control threads have been joined
[2025-11-24 10:11:01] 2025-11-24 09:10:10,237 | INFO     | all data control threads have been joined
[2025-11-24 10:11:01] 2025-11-24 09:10:10,853 | INFO     | [job] retrieve thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:10,854 | INFO     | [job] queue monitor thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:10,878 | INFO     | [job] validate thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:10,925 | INFO     | [job] job monitor thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:10,983 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:11,128 | INFO     | [payload] control thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:11,178 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:11,242 | INFO     | [data] control thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:11,265 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:11,314 | INFO     | all job control threads have been joined
[2025-11-24 10:11:01] 2025-11-24 09:10:11,468 | INFO     | [data] copytool_in thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:11,855 | INFO     | [data] copytool_out thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:12,001 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 10:11:01] 2025-11-24 09:10:12,002 | INFO     | [payload] failed_post thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:12,244 | INFO     | [payload] validate_post thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:12,249 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:12,319 | INFO     | [job] control thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:16,007 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 10:11:01] 2025-11-24 09:10:55,072 | INFO     | [monitor] cgroup control has ended
[2025-11-24 10:11:01] 2025-11-24 09:10:56,072 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875970938688)>', '<ExcThread(monitor, started 139875374315264)>']
[2025-11-24 10:11:01] 2025-11-24 09:10:56,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 10:11:01] 2025-11-24 09:10:56,083 | INFO     | [monitor] control thread has ended
[2025-11-24 10:11:01] 2025-11-24 09:11:01,076 | INFO     | all workflow threads have been joined
[2025-11-24 10:11:01] 2025-11-24 09:11:01,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 10:11:01] 2025-11-24 09:11:01,077 | INFO     | traces error code: 0
[2025-11-24 10:11:01] 2025-11-24 09:11:01,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 10:11:01] 2025-11-24 09:11:01,216 [wrapper] ==== pilot stdout END ====
[2025-11-24 10:11:01] 2025-11-24 09:11:01,220 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 10:11:01] 2025-11-24 09:11:01,224 [wrapper] pilotpid: 9103
[2025-11-24 10:11:01] 2025-11-24 09:11:01,227 [wrapper] Pilot exit status: 0
[2025-11-24 10:11:01] 2025-11-24 09:11:01,240 [wrapper] pandaids: 6893851328
[2025-11-24 10:11:01] 2025-11-24 09:11:01,275 [wrapper] cleanup supervisor_pilot  3776 9104
[2025-11-24 10:11:01] 2025-11-24 09:11:01,284 [wrapper] Test setup, not cleaning
[2025-11-24 10:11:01] 2025-11-24 09:11:01,288 [wrapper] apfmon messages muted
[2025-11-24 10:11:01] 2025-11-24 09:11:01,292 [wrapper] ==== wrapper stdout END ====
[2025-11-24 10:11:01] 2025-11-24 09:11:01,295 [wrapper] ==== wrapper stderr END ====
[2025-11-24 10:11:01]  *** Error codes and diagnostics ***
[2025-11-24 10:11:01]     "exeErrorCode": 0,
[2025-11-24 10:11:01]     "exeErrorDiag": "",
[2025-11-24 10:11:01]     "pilotErrorCode": 0,
[2025-11-24 10:11:01]     "pilotErrorDiag": "",
[2025-11-24 10:11:01]  *** Listing of results directory ***
[2025-11-24 10:11:01] total 1321200
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:37 queuedata.json
[2025-11-24 10:11:01] -rwx------. 1 boinc boinc     36292 Nov 20 12:38 runpilot2-wrapper.sh
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc       100 Nov 23 13:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 10:11:01] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 13:44 run_atlas
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc       105 Nov 23 13:44 job.xml
[2025-11-24 10:11:01] -rw-r--r--. 2 boinc boinc 408023179 Nov 23 13:44 EVNT.47493127._000355.pool.root.1
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc      6392 Nov 23 13:44 init_data.xml
[2025-11-24 10:11:01] -rw-r--r--. 2 boinc boinc     15847 Nov 23 13:44 start_atlas.sh
[2025-11-24 10:11:01] drwxrwx--x. 2 boinc boinc        68 Nov 23 13:44 shared
[2025-11-24 10:11:01] -rw-r--r--. 2 boinc boinc    590102 Nov 23 13:44 input.tar.gz
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc         0 Nov 23 13:44 boinc_lockfile
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc      2785 Nov 23 13:44 pandaJob.out
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc    989784 Nov 23 13:48 agis_schedconf.cvmfs.json
[2025-11-24 10:11:01] drwx------. 5 boinc boinc      4096 Nov 23 13:48 pilot3
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc       533 Nov 24 09:59 boinc_task_state.xml
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc 916702047 Nov 24 10:09 HITS.47523449._003546.pool.root.1
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc        95 Nov 24 10:09 pilot_heartbeat.json
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc      1033 Nov 24 10:09 memory_monitor_summary.json
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc   1526164 Nov 24 10:09 agis_ddmendpoints.agis.ALL.json
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc   2335958 Nov 24 10:10 log.47523449._003546.job.log.tgz.1
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc      8630 Nov 24 10:10 heartbeat.json
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc      8192 Nov 24 10:10 boinc_mmap_file
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc        29 Nov 24 10:10 wrapper_checkpoint.txt
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc      4615 Nov 24 10:11 pilotlog.txt
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc   9798439 Nov 24 10:11 log.47523449._003546.job.log.1
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc       353 Nov 24 10:11 output.list
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc       620 Nov 24 10:11 runtime_log
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc  12154880 Nov 24 10:11 result.tar.gz
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc      8817 Nov 24 10:11 runtime_log.err
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc       661 Nov 24 10:11 RBtLDmYAIg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkYGKDm3YHFin.diag
[2025-11-24 10:11:01] -rw-r--r--. 1 boinc boinc     20795 Nov 24 10:11 stderr.txt
[2025-11-24 10:11:01] HITS file was successfully produced:
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc 916702047 Nov 24 10:09 shared/HITS.pool.root.1
[2025-11-24 10:11:01]  *** Contents of shared directory: ***
[2025-11-24 10:11:01] total 1306152
[2025-11-24 10:11:01] -rw-r--r--. 2 boinc boinc 408023179 Nov 23 13:44 ATLAS.root_0
[2025-11-24 10:11:01] -rw-r--r--. 2 boinc boinc     15847 Nov 23 13:44 start_atlas.sh
[2025-11-24 10:11:01] -rw-r--r--. 2 boinc boinc    590102 Nov 23 13:44 input.tar.gz
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc 916702047 Nov 24 10:09 HITS.pool.root.1
[2025-11-24 10:11:01] -rw-------. 1 boinc boinc  12154880 Nov 24 10:11 result.tar.gz
10:11:02 (5333): run_atlas exited; CPU time 296249.216744
10:11:02 (5333): called boinc_finish(0)

</stderr_txt>
]]>

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