Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:35:37 (20780): wrapper (7.7.26015): starting
12:35:37 (20780): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 12:35:37] Arguments: --nthreads 12
[2025-11-20 12:35:37] Threads: 12
[2025-11-20 12:35:37] Checking for CVMFS
[2025-11-20 12:35:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 12:35:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 12:35:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 12:35:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 12:35:38] 2.11.2.0 2987 279303 94324 153090 2 82 17698188 20275200 1 130560 1 125492262 99.966 16751443 14024 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 12:35:38] CVMFS is ok
[2025-11-20 12:35:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 12:35:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 12:35:38] Further information can be found at the LHC@home message board.
[2025-11-20 12:35:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 12:35:38] Checking for apptainer binary...
[2025-11-20 12:35:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 12:35:38] Running /usr/bin/apptainer --version
[2025-11-20 12:35:38] apptainer version 1.3.2-1.el7
[2025-11-20 12:35:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 12:35:39] c-205-19.aglt2.org
[2025-11-20 12:35:39] apptainer works
[2025-11-20 12:35:39] Set ATHENA_PROC_NUMBER=12
[2025-11-20 12:35:39] Set ATHENA_CORE_NUMBER=12
[2025-11-20 12:35:39] Starting ATLAS job with PandaID=6893838308
[2025-11-20 12:35:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:32:05]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:32:05] 2025-11-21 00:31:32,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,392 | INFO     | time since job start (24938s) is within the limit (172800.0s)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,685 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 19:32:05] 2025-11-21 00:31:32,688 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1717.9166666666667
[2025-11-20 19:32:05] 2025-11-21 00:31:32,689 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893838308/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,690 | INFO     | extracted standard info from prmon json
[2025-11-20 19:32:05] 2025-11-21 00:31:32,690 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 19:32:05] 2025-11-21 00:31:32,690 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 19:32:05] 2025-11-21 00:31:32,696 | INFO     | fitting pss+swap vs Time
[2025-11-20 19:32:05] 2025-11-21 00:31:32,697 | INFO     | sum of square deviations: 21215230178.826385
[2025-11-20 19:32:05] 2025-11-21 00:31:32,701 | INFO     | sum of deviations: 334043334037.4722
[2025-11-20 19:32:05] 2025-11-21 00:31:32,701 | INFO     | mean x: 1763672628.1124694
[2025-11-20 19:32:05] 2025-11-21 00:31:32,701 | INFO     | mean y: 3407718.750611247
[2025-11-20 19:32:05] 2025-11-21 00:31:32,701 | INFO     | intersect: -27766410467.493137
[2025-11-20 19:32:05] 2025-11-21 00:31:32,701 | INFO     | chi2: 6.1861578661466465
[2025-11-20 19:32:05] 2025-11-21 00:31:32,702 | INFO     | sum of square deviations: 20446653053.76233
[2025-11-20 19:32:05] 2025-11-21 00:31:32,706 | INFO     | sum of deviations: 493492930280.30676
[2025-11-20 19:32:05] 2025-11-21 00:31:32,706 | INFO     | mean x: 1763672475.6138613
[2025-11-20 19:32:05] 2025-11-21 00:31:32,706 | INFO     | mean y: 3439322.373762376
[2025-11-20 19:32:05] 2025-11-21 00:31:32,706 | INFO     | intersect: -42563913669.67277
[2025-11-20 19:32:05] 2025-11-21 00:31:32,706 | INFO     | chi2: 3.036420728250448
[2025-11-20 19:32:05] 2025-11-21 00:31:32,706 | INFO     | current chi2=3.036420728250448 (change=50.91588682424245 %)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,707 | INFO     | sum of square deviations: 19696866978.696884
[2025-11-20 19:32:05] 2025-11-21 00:31:32,711 | INFO     | sum of deviations: 548570862853.36584
[2025-11-20 19:32:05] 2025-11-21 00:31:32,711 | INFO     | mean x: 1763672323.1152883
[2025-11-20 19:32:05] 2025-11-21 00:31:32,711 | INFO     | mean y: 3450477.513784461
[2025-11-20 19:32:05] 2025-11-21 00:31:32,711 | INFO     | intersect: -49115998271.78991
[2025-11-20 19:32:05] 2025-11-21 00:31:32,712 | INFO     | chi2: 2.4130368706961125
[2025-11-20 19:32:05] 2025-11-21 00:31:32,712 | INFO     | current chi2=2.4130368706961125 (change=20.53022006319666 %)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,712 | INFO     | right removable region: 398
[2025-11-20 19:32:05] 2025-11-21 00:31:32,713 | INFO     | sum of square deviations: 20446649819.98761
[2025-11-20 19:32:05] 2025-11-21 00:31:32,717 | INFO     | sum of deviations: 209323315522.11633
[2025-11-20 19:32:05] 2025-11-21 00:31:32,717 | INFO     | mean x: 1763672780.611386
[2025-11-20 19:32:05] 2025-11-21 00:31:32,717 | INFO     | mean y: 3432370.452970297
[2025-11-20 19:32:05] 2025-11-21 00:31:32,717 | INFO     | intersect: -18052231378.079365
[2025-11-20 19:32:05] 2025-11-21 00:31:32,718 | INFO     | chi2: 3.998840498253885
[2025-11-20 19:32:05] 2025-11-21 00:31:32,718 | INFO     | current chi2=3.998840498253885 (change=35.35825330069114 %)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,718 | INFO     | sum of square deviations: 19696835989.924797
[2025-11-20 19:32:05] 2025-11-21 00:31:32,722 | INFO     | sum of deviations: 172365691365.16528
[2025-11-20 19:32:05] 2025-11-21 00:31:32,722 | INFO     | mean x: 1763672933.112782
[2025-11-20 19:32:05] 2025-11-21 00:31:32,722 | INFO     | mean y: 3439883.751879699
[2025-11-20 19:32:05] 2025-11-21 00:31:32,722 | INFO     | intersect: -15430343725.63148
[2025-11-20 19:32:05] 2025-11-21 00:31:32,723 | INFO     | chi2: 3.914144670214352
[2025-11-20 19:32:05] 2025-11-21 00:31:32,723 | INFO     | current chi2=3.914144670214352 (change=2.1180096599630875 %)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,723 | INFO     | left removable region: 20
[2025-11-20 19:32:05] 2025-11-21 00:31:32,723 | INFO     | sum of square deviations: 16747651817.378328
[2025-11-20 19:32:05] 2025-11-21 00:31:32,727 | INFO     | sum of deviations: 331236565105.3227
[2025-11-20 19:32:05] 2025-11-21 00:31:32,727 | INFO     | mean x: 1763672902.6164021
[2025-11-20 19:32:05] 2025-11-21 00:31:32,727 | INFO     | mean y: 3495786.5608465606
[2025-11-20 19:32:05] 2025-11-21 00:31:32,727 | INFO     | intersect: -34878585630.11867
[2025-11-20 19:32:05] 2025-11-21 00:31:32,727 | INFO     | chi2: 0.0598155716172514
[2025-11-20 19:32:05] 2025-11-21 00:31:32,728 | INFO     | current memory leak: 19.78 B/s (using 378 data points, chi2=0.06)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,728 | INFO     | could have reported an average CPU frequency of 2365 MHz (17 samples)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,728 | INFO     | ..............................
[2025-11-20 19:32:05] 2025-11-21 00:31:32,728 | INFO     | . Timing measurements:
[2025-11-20 19:32:05] 2025-11-21 00:31:32,728 | INFO     | . get job = 0 s
[2025-11-20 19:32:05] 2025-11-21 00:31:32,728 | INFO     | . initial setup = 2 s
[2025-11-20 19:32:05] 2025-11-21 00:31:32,728 | INFO     | . payload setup = 7 s
[2025-11-20 19:32:05] 2025-11-21 00:31:32,729 | INFO     | . stage-in = 0 s
[2025-11-20 19:32:05] 2025-11-21 00:31:32,729 | INFO     | . payload execution = 24900 s
[2025-11-20 19:32:05] 2025-11-21 00:31:32,729 | INFO     | . stage-out = 3 s
[2025-11-20 19:32:05] 2025-11-21 00:31:32,729 | INFO     | . log creation = 0 s
[2025-11-20 19:32:05] 2025-11-21 00:31:32,729 | INFO     | ..............................
[2025-11-20 19:32:05] 2025-11-21 00:31:32,811 | INFO     | 
[2025-11-20 19:32:05] 2025-11-21 00:31:32,811 | INFO     | job summary report
[2025-11-20 19:32:05] 2025-11-21 00:31:32,811 | INFO     | --------------------------------------------------
[2025-11-20 19:32:05] 2025-11-21 00:31:32,811 | INFO     | PanDA job id: 6893838308
[2025-11-20 19:32:05] 2025-11-21 00:31:32,811 | INFO     | task id: 47523449
[2025-11-20 19:32:05] 2025-11-21 00:31:32,811 | INFO     | errors: (none)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 19:32:05] 2025-11-21 00:31:32,812 | INFO     | pilot state: finished 
[2025-11-20 19:32:05] 2025-11-21 00:31:32,812 | INFO     | transexitcode: 0
[2025-11-20 19:32:05] 2025-11-21 00:31:32,812 | INFO     | exeerrorcode: 0
[2025-11-20 19:32:05] 2025-11-21 00:31:32,812 | INFO     | exeerrordiag: 
[2025-11-20 19:32:05] 2025-11-21 00:31:32,812 | INFO     | exitcode: 0
[2025-11-20 19:32:05] 2025-11-21 00:31:32,813 | INFO     | exitmsg: OK
[2025-11-20 19:32:05] 2025-11-21 00:31:32,813 | INFO     | cpuconsumptiontime: 286049 s
[2025-11-20 19:32:05] 2025-11-21 00:31:32,813 | INFO     | nevents: 1000
[2025-11-20 19:32:05] 2025-11-21 00:31:32,813 | INFO     | neventsw: 0
[2025-11-20 19:32:05] 2025-11-21 00:31:32,813 | INFO     | pid: 30915
[2025-11-20 19:32:05] 2025-11-21 00:31:32,813 | INFO     | pgrp: 30915
[2025-11-20 19:32:05] 2025-11-21 00:31:32,814 | INFO     | corecount: 12
[2025-11-20 19:32:05] 2025-11-21 00:31:32,814 | INFO     | event service: False
[2025-11-20 19:32:05] 2025-11-21 00:31:32,814 | INFO     | sizes: {0: 2298636, 1: 2298835, 5: 2299097, 11: 2299153, 24912: 2335994, 24916: 2345172, 24922: 2345426}
[2025-11-20 19:32:05] 2025-11-21 00:31:32,814 | INFO     | --------------------------------------------------
[2025-11-20 19:32:05] 2025-11-21 00:31:32,814 | INFO     | 
[2025-11-20 19:32:05] 2025-11-21 00:31:32,814 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 19:32:05] 2025-11-21 00:31:32,841 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,841 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,841 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,842 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,842 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,842 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,842 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,842 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,842 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,843 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,843 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,843 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,843 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,843 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,843 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,843 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,844 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 19:32:05] 2025-11-21 00:31:32,844 | INFO     | job 6893838308 has completed (purged errors)
[2025-11-20 19:32:05] 2025-11-21 00:31:32,844 | INFO     | overall cleanup function is called
[2025-11-20 19:32:05] 2025-11-21 00:31:33,860 | INFO     | --- collectZombieJob: --- 10, [30915]
[2025-11-20 19:32:05] 2025-11-21 00:31:33,861 | INFO     | zombie collector waiting for pid 30915
[2025-11-20 19:32:05] 2025-11-21 00:31:33,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 19:32:05] 2025-11-21 00:31:33,861 | INFO     | collected zombie processes
[2025-11-20 19:32:05] 2025-11-21 00:31:33,861 | INFO     | will attempt to kill all subprocesses of pid=30915
[2025-11-20 19:32:05] 2025-11-21 00:31:33,951 | INFO     | process IDs to be killed: [30915] (in reverse order)
[2025-11-20 19:32:05] 2025-11-21 00:31:34,001 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 19:32:05] 2025-11-21 00:31:34,002 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 19:32:05] 2025-11-21 00:31:34,005 | INFO     | did not find any defunct processes belonging to 30915
[2025-11-20 19:32:05] 2025-11-21 00:31:34,008 | INFO     | did not find any defunct processes belonging to 30915
[2025-11-20 19:32:05] 2025-11-21 00:31:34,010 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 19:32:05] 2025-11-21 00:31:34,010 | INFO     | ready for new job
[2025-11-20 19:32:05] 2025-11-21 00:31:34,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 19:32:05] 2025-11-21 00:31:34,012 | INFO     | ***************************************
[2025-11-20 19:32:05] 2025-11-21 00:31:34,012 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 19:32:05] 2025-11-21 00:31:34,012 | INFO     | ***************************************
[2025-11-20 19:32:05] 2025-11-21 00:31:34,012 | INFO     | 
[2025-11-20 19:32:05] 2025-11-21 00:31:34,013 | INFO     | architecture information:
[2025-11-20 19:32:05] 2025-11-21 00:31:34,014 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:32:05] 2025-11-21 00:31:34,029 | INFO     | cat /etc/os-release:
[2025-11-20 19:32:05] NAME="CentOS Linux"
[2025-11-20 19:32:05] VERSION="7 (Core)"
[2025-11-20 19:32:05] ID="centos"
[2025-11-20 19:32:05] ID_LIKE="rhel fedora"
[2025-11-20 19:32:05] VERSION_ID="7"
[2025-11-20 19:32:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:32:05] ANSI_COLOR="0;31"
[2025-11-20 19:32:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:32:05] HOME_URL="https://www.centos.org/"
[2025-11-20 19:32:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:32:05] 
[2025-11-20 19:32:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:32:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:32:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:32:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:32:05] 
[2025-11-20 19:32:05] 2025-11-21 00:31:34,029 | INFO     | ***************************************
[2025-11-20 19:32:05] 2025-11-21 00:31:34,532 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 19:32:05] 2025-11-21 00:31:34,549 | INFO     | sufficient remaining disk space (28267511808 B)
[2025-11-20 19:32:05] 2025-11-21 00:31:34,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:32:05] 2025-11-21 00:31:34,550 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:32:05] 2025-11-21 00:31:34,550 | INFO     | update_server=False
[2025-11-20 19:32:05] 2025-11-21 00:31:34,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:32:05] 2025-11-21 00:31:34,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:32:05] 2025-11-21 00:31:34,551 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:32:05] 2025-11-21 00:31:34,686 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 19:32:05] 2025-11-21 00:31:34,686 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 19:32:05] 2025-11-21 00:31:34,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:32:05] 2025-11-21 00:31:34,686 | INFO     | will abort loop
[2025-11-20 19:32:05] 2025-11-21 00:31:34,691 | INFO     | all payload control threads have been joined
[2025-11-20 19:32:05] 2025-11-21 00:31:35,108 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:32:05] 2025-11-21 00:31:35,312 | INFO     | all data control threads have been joined
[2025-11-20 19:32:05] 2025-11-21 00:31:35,551 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:35,556 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:35,569 | INFO     | all job control threads have been joined
[2025-11-20 19:32:05] 2025-11-21 00:31:35,692 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:35,692 | INFO     | [payload] control thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:35,695 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,289 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,299 | INFO     | [job] validate thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,318 | INFO     | [data] control thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,508 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,557 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,574 | INFO     | [job] control thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,654 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,726 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:36,851 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:37,043 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:37,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:32:05] 2025-11-21 00:31:41,766 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:32:05] 2025-11-21 00:31:41,958 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140367865546560)>', '<ExcThread(monitor, started 140366896420608)>']
[2025-11-20 19:32:05] 2025-11-21 00:31:46,973 | INFO     | all workflow threads have been joined
[2025-11-20 19:32:05] 2025-11-21 00:31:46,973 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:32:05] 2025-11-21 00:31:46,973 | INFO     | traces error code: 0
[2025-11-20 19:32:05] 2025-11-21 00:31:46,974 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:32:05] 2025-11-21 00:32:05,595 | INFO     | PID=24476 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 19:32:05] 2025-11-21 00:32:05,596 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:32:05] 2025-11-21 00:32:05,596 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:32:05] 2025-11-21 00:32:05,596 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:32:05] 2025-11-21 00:32:05,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:32:05] 2025-11-21 00:32:05,596 | INFO     | [monitor] control thread has ended
[2025-11-20 19:32:05] 2025-11-21 00:32:05,679 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:32:05] 2025-11-21 00:32:05,683 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:32:05] 2025-11-21 00:32:05,687 [wrapper] pilotpid: 24476
[2025-11-20 19:32:05] 2025-11-21 00:32:05,690 [wrapper] Pilot exit status: 0
[2025-11-20 19:32:05] 2025-11-21 00:32:05,705 [wrapper] pandaids: 6893838308
[2025-11-20 19:32:05] 2025-11-21 00:32:05,741 [wrapper] cleanup supervisor_pilot 24358 24477
[2025-11-20 19:32:05] 2025-11-21 00:32:05,745 [wrapper] Test setup, not cleaning
[2025-11-20 19:32:05] 2025-11-21 00:32:05,749 [wrapper] apfmon messages muted
[2025-11-20 19:32:05] 2025-11-21 00:32:05,752 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:32:05] 2025-11-21 00:32:05,756 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:32:05]  *** Error codes and diagnostics ***
[2025-11-20 19:32:05]     "exeErrorCode": 0,
[2025-11-20 19:32:05]     "exeErrorDiag": "",
[2025-11-20 19:32:05]     "pilotErrorCode": 0,
[2025-11-20 19:32:05]     "pilotErrorDiag": "",
[2025-11-20 19:32:05]  *** Listing of results directory ***
[2025-11-20 19:32:05] total 1293792
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:17 queuedata.json
[2025-11-20 19:32:05] -rwx------ 1 boincer umatlas     36292 Nov 20 05:17 runpilot2-wrapper.sh
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas       100 Nov 20 12:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:32:05] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 12:35 run_atlas
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas       105 Nov 20 12:35 job.xml
[2025-11-20 19:32:05] -rw-r--r-- 2 boincer umatlas 408001037 Nov 20 12:35 EVNT.47493127._000129.pool.root.1
[2025-11-20 19:32:05] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 12:35 start_atlas.sh
[2025-11-20 19:32:05] drwxrwx--x 2 boincer umatlas      4096 Nov 20 12:35 shared
[2025-11-20 19:32:05] -rw-r--r-- 2 boincer umatlas    590101 Nov 20 12:35 input.tar.gz
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas         0 Nov 20 12:35 boinc_lockfile
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas      2786 Nov 20 12:35 pandaJob.out
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas        57 Nov 20 12:35 setup.sh.local
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas    989472 Nov 20 12:35 agis_schedconf.cvmfs.json
[2025-11-20 19:32:05] drwx------ 5 boincer umatlas      4096 Nov 20 12:35 pilot3
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas       532 Nov 20 19:21 boinc_task_state.xml
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas      5954 Nov 20 19:27 init_data.xml
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas 901578661 Nov 20 19:30 HITS.47523449._001289.pool.root.1
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas      1065 Nov 20 19:31 memory_monitor_summary.json
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas   1526164 Nov 20 19:31 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas   2169726 Nov 20 19:31 log.47523449._001289.job.log.tgz.1
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas      8668 Nov 20 19:31 heartbeat.json
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 19:31 boinc_mmap_file
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas        29 Nov 20 19:31 wrapper_checkpoint.txt
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas        95 Nov 20 19:32 pilot_heartbeat.json
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas       745 Nov 20 19:32 pilotlog.txt
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas   3499526 Nov 20 19:32 log.47523449._001289.job.log.1
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas       353 Nov 20 19:32 output.list
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas       620 Nov 20 19:32 runtime_log
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas   5693440 Nov 20 19:32 result.tar.gz
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas      9345 Nov 20 19:32 runtime_log.err
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas       670 Nov 20 19:32 H2gKDmhuGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAKGKDmqwwyLo.diag
[2025-11-20 19:32:05] -rw-r--r-- 1 boincer umatlas     21307 Nov 20 19:32 stderr.txt
[2025-11-20 19:32:05] HITS file was successfully produced:
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas 901578661 Nov 20 19:30 shared/HITS.pool.root.1
[2025-11-20 19:32:05]  *** Contents of shared directory: ***
[2025-11-20 19:32:05] total 1285052
[2025-11-20 19:32:05] -rw-r--r-- 2 boincer umatlas 408001037 Nov 20 12:35 ATLAS.root_0
[2025-11-20 19:32:05] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 12:35 start_atlas.sh
[2025-11-20 19:32:05] -rw-r--r-- 2 boincer umatlas    590101 Nov 20 12:35 input.tar.gz
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas 901578661 Nov 20 19:30 HITS.pool.root.1
[2025-11-20 19:32:05] -rw------- 1 boincer umatlas   5693440 Nov 20 19:32 result.tar.gz
19:32:07 (20780): run_atlas exited; CPU time 279835.494636
19:32:07 (20780): called boinc_finish(0)

</stderr_txt>
]]>

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