Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:55:43 (1454762): wrapper (7.7.26015): starting
18:55:43 (1454762): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 18:55:43] Arguments: --nthreads 3
[2025-11-20 18:55:43] Threads: 3
[2025-11-20 18:55:43] Checking for CVMFS
[2025-11-20 18:55:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 18:55:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 18:55:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 18:55:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 18:55:44] 2.9.2.0 16720 302 67348 153088 1 88 34405804 36864000 0 130560 0 4322272 99.999 9585 9269 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 18:55:44] CVMFS is ok
[2025-11-20 18:55:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 18:55:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 18:55:44] Further information can be found at the LHC@home message board.
[2025-11-20 18:55:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 18:55:44] Checking for apptainer binary...
[2025-11-20 18:55:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 18:55:44] Running /usr/bin/apptainer --version
[2025-11-20 18:55:44] apptainer version 1.4.1-1.1
[2025-11-20 18:55:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 18:55:44] thA335
[2025-11-20 18:55:44] apptainer works
[2025-11-20 18:55:44] Set ATHENA_PROC_NUMBER=3
[2025-11-20 18:55:44] Set ATHENA_CORE_NUMBER=3
[2025-11-20 18:55:44] Starting ATLAS job with PandaID=6893836495
[2025-11-20 18:55:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:00:02]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:00:02] 2025-11-20 17:59:06,156 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:00:02] 2025-11-20 17:59:06,166 | INFO     | cat /etc/os-release:
[2025-11-20 19:00:02] NAME="CentOS Linux"
[2025-11-20 19:00:02] VERSION="7 (Core)"
[2025-11-20 19:00:02] ID="centos"
[2025-11-20 19:00:02] ID_LIKE="rhel fedora"
[2025-11-20 19:00:02] VERSION_ID="7"
[2025-11-20 19:00:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:00:02] ANSI_COLOR="0;31"
[2025-11-20 19:00:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:00:02] HOME_URL="https://www.centos.org/"
[2025-11-20 19:00:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:00:02] 
[2025-11-20 19:00:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:00:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:00:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:00:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:00:02] 
[2025-11-20 19:00:02] 2025-11-20 17:59:06,166 | INFO     | ***************************************
[2025-11-20 19:00:02] 2025-11-20 17:59:06,669 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 19:00:02] 2025-11-20 17:59:06,683 | INFO     | sufficient remaining disk space (827645231104 B)
[2025-11-20 19:00:02] 2025-11-20 17:59:06,683 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:00:02] 2025-11-20 17:59:06,683 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:00:02] 2025-11-20 17:59:06,683 | INFO     | update_server=False
[2025-11-20 19:00:02] 2025-11-20 17:59:06,683 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:00:02] 2025-11-20 17:59:06,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:00:02] 2025-11-20 17:59:06,775 | INFO     | all data control threads have been joined
[2025-11-20 19:00:02] 2025-11-20 17:59:07,116 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 19:00:02] 2025-11-20 17:59:07,116 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 19:00:02] 2025-11-20 17:59:07,116 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:00:02] 2025-11-20 17:59:07,117 | INFO     | will abort loop
[2025-11-20 19:00:02] 2025-11-20 17:59:07,689 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:07,726 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:07,781 | INFO     | [data] control thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:08,084 | INFO     | all job control threads have been joined
[2025-11-20 19:00:02] 2025-11-20 17:59:08,087 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:08,116 | INFO     | all payload control threads have been joined
[2025-11-20 19:00:02] 2025-11-20 17:59:08,123 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:08,432 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:08,687 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:08,768 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:08,898 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:09,090 | INFO     | [job] control thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:09,097 | INFO     | [job] validate thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:09,109 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:09,122 | INFO     | [payload] control thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:09,173 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:09,582 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:00:02] 2025-11-20 17:59:09,783 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:00:02] 2025-11-20 17:59:10,588 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:13,790 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:00:02] 2025-11-20 17:59:37,682 | INFO     | PID=1458506 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 19:00:02] 2025-11-20 17:59:37,682 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:00:02] 2025-11-20 17:59:37,682 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:00:02] 2025-11-20 17:59:37,682 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:00:02] 2025-11-20 17:59:56,856 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:00:02] 2025-11-20 17:59:57,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140160130889536)>', '<ExcThread(monitor, started 140159412598528)>']
[2025-11-20 19:00:02] 2025-11-20 17:59:57,787 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:00:02] 2025-11-20 17:59:57,787 | INFO     | [monitor] control thread has ended
[2025-11-20 19:00:02] 2025-11-20 18:00:02,665 | INFO     | all workflow threads have been joined
[2025-11-20 19:00:02] 2025-11-20 18:00:02,665 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:00:02] 2025-11-20 18:00:02,666 | INFO     | traces error code: 0
[2025-11-20 19:00:02] 2025-11-20 18:00:02,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:00:02] 2025-11-20 18:00:02,712 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:00:02] 2025-11-20 18:00:02,715 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:00:02] 2025-11-20 18:00:02,718 [wrapper] pilotpid: 1458506
[2025-11-20 19:00:02] 2025-11-20 18:00:02,721 [wrapper] Pilot exit status: 0
[2025-11-20 19:00:02] 2025-11-20 18:00:02,728 [wrapper] pandaids: 6893836495
[2025-11-20 19:00:02] 2025-11-20 18:00:02,746 [wrapper] cleanup supervisor_pilot 1458512 1458507
[2025-11-20 19:00:02] 2025-11-20 18:00:02,749 [wrapper] Test setup, not cleaning
[2025-11-20 19:00:02] 2025-11-20 18:00:02,752 [wrapper] apfmon messages muted
[2025-11-20 19:00:02] 2025-11-20 18:00:02,755 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:00:02] 2025-11-20 18:00:02,758 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:00:02]  *** Error codes and diagnostics ***
[2025-11-20 19:00:02]     "exeErrorCode": 65,
[2025-11-20 19:00:02]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 19:00:02]     "pilotErrorCode": 1305,
[2025-11-20 19:00:02]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 19:00:02]  *** Listing of results directory ***
[2025-11-20 19:00:02] total 404408
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:17 queuedata.json
[2025-11-20 19:00:02] -rwx------ 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc       100 Nov 20 18:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:00:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 18:55 run_atlas
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc       105 Nov 20 18:55 job.xml
[2025-11-20 19:00:02] -rw-r--r-- 2 boinc boinc 409915423 Nov 20 18:55 EVNT.47493127._000108.pool.root.1
[2025-11-20 19:00:02] -rw-r--r-- 2 boinc boinc    590099 Nov 20 18:55 input.tar.gz
[2025-11-20 19:00:02] -rw-r--r-- 2 boinc boinc     15847 Nov 20 18:55 start_atlas.sh
[2025-11-20 19:00:02] drwxrwx--x 2 boinc boinc      4096 Nov 20 18:55 shared
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc         0 Nov 20 18:55 boinc_setup_complete
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc      6194 Nov 20 18:55 init_data.xml
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc         0 Nov 20 18:55 boinc_lockfile
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc      2786 Nov 20 18:55 pandaJob.out
[2025-11-20 19:00:02] -rw------- 1 boinc boinc    989440 Nov 20 18:55 agis_schedconf.cvmfs.json
[2025-11-20 19:00:02] -rw------- 1 boinc boinc   1526164 Nov 20 18:55 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:00:02] drwx------ 5 boinc boinc      4096 Nov 20 18:55 pilot3
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc       522 Nov 20 18:56 boinc_task_state.xml
[2025-11-20 19:00:02] -rw------- 1 boinc boinc       954 Nov 20 18:56 memory_monitor_summary.json
[2025-11-20 19:00:02] -rw------- 1 boinc boinc     55615 Nov 20 18:57 log.47523449._001074.job.log.tgz.1
[2025-11-20 19:00:02] -rw------- 1 boinc boinc        95 Nov 20 18:58 pilot_heartbeat.json
[2025-11-20 19:00:02] -rw------- 1 boinc boinc      8383 Nov 20 18:59 heartbeat.json
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc      8192 Nov 20 18:59 boinc_mmap_file
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc        22 Nov 20 18:59 wrapper_checkpoint.txt
[2025-11-20 19:00:02] -rw------- 1 boinc boinc      4938 Nov 20 19:00 pilotlog.txt
[2025-11-20 19:00:02] -rw------- 1 boinc boinc     91573 Nov 20 19:00 log.47523449._001074.job.log.1
[2025-11-20 19:00:02] -rw------- 1 boinc boinc       186 Nov 20 19:00 output.list
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc       620 Nov 20 19:00 runtime_log
[2025-11-20 19:00:02] -rw------- 1 boinc boinc    163840 Nov 20 19:00 result.tar.gz
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc      8744 Nov 20 19:00 runtime_log.err
[2025-11-20 19:00:02] -rw------- 1 boinc boinc       649 Nov 20 19:00 Pz8NDm2uGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhIHKDm6kigWo.diag
[2025-11-20 19:00:02] -rw-r--r-- 1 boinc boinc      9486 Nov 20 19:00 stderr.txt
[2025-11-20 19:00:02] No HITS result produced
[2025-11-20 19:00:02]  *** Contents of shared directory: ***
[2025-11-20 19:00:02] total 401072
[2025-11-20 19:00:02] -rw-r--r-- 2 boinc boinc 409915423 Nov 20 18:55 ATLAS.root_0
[2025-11-20 19:00:02] -rw-r--r-- 2 boinc boinc    590099 Nov 20 18:55 input.tar.gz
[2025-11-20 19:00:02] -rw-r--r-- 2 boinc boinc     15847 Nov 20 18:55 start_atlas.sh
[2025-11-20 19:00:02] -rw------- 1 boinc boinc    163840 Nov 20 19:00 result.tar.gz
19:00:03 (1454762): run_atlas exited; CPU time 30.453804
19:00:03 (1454762): called boinc_finish(0)

</stderr_txt>
]]>

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