Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-20 13:03:05 (22868): vboxwrapper version 26210
2025-11-20 13:03:05 (22868): BOINC client version: 7.24.1
2025-11-20 13:03:06 (22868): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-11-20 13:03:07 (22868): Successfully copied 'init_data.xml' to the shared directory.
2025-11-20 13:03:07 (22868): Create VM. (boinc_ab5223d76280520c, slot#6)
2025-11-20 13:03:08 (22868): Setting Memory Size for VM. (4600MB)
2025-11-20 13:03:08 (22868): Setting CPU Count for VM. (6)
2025-11-20 13:03:08 (22868): Setting Chipset Options for VM.
2025-11-20 13:03:08 (22868): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-20 13:03:09 (22868): Setting Boot Options for VM.
2025-11-20 13:03:09 (22868): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-20 13:03:09 (22868): Enabling VM Network Access.
2025-11-20 13:03:10 (22868): Disabling USB Support for VM.
2025-11-20 13:03:10 (22868): Disabling COM Port Support for VM.
2025-11-20 13:03:10 (22868): Disabling LPT Port Support for VM.
2025-11-20 13:03:11 (22868): Disabling Audio Support for VM.
2025-11-20 13:03:11 (22868): Disabling Clipboard Support for VM.
2025-11-20 13:03:11 (22868): Disabling Drag and Drop Support for VM.
2025-11-20 13:03:11 (22868): Adding storage controller(s) to VM.
2025-11-20 13:03:12 (22868): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-20 13:03:14 (22868): Adding VirtualBox Guest Additions to VM.
2025-11-20 13:03:14 (22868): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-20 13:03:14 (22868): forwarding host port 59067 to guest port 80
2025-11-20 13:03:15 (22868): Enabling remote desktop for VM.
2025-11-20 13:03:15 (22868): Enabling shared directory for VM.
2025-11-20 13:03:16 (22868): Starting VM using VBoxManage interface. (boinc_ab5223d76280520c, slot#6)
2025-11-20 13:03:22 (22868): Successfully started VM. (PID = '23136')
2025-11-20 13:03:22 (22868): Reporting VM Process ID to BOINC.
2025-11-20 13:03:22 (22868): Guest Log: BIOS: VirtualBox 7.1.6
2025-11-20 13:03:22 (22868): Guest Log: CPUID EDX: 0x178bfbff
2025-11-20 13:03:22 (22868): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-20 13:03:22 (22868): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-20 13:03:22 (22868): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-20 13:03:22 (22868): Detected: Web Application Enabled (http://localhost:59067)
2025-11-20 13:03:22 (22868): Detected: Remote Desktop Enabled (localhost:59068)
2025-11-20 13:03:22 (22868): Preference change detected
2025-11-20 13:03:22 (22868): Setting CPU throttle for VM. (90%)
2025-11-20 13:03:22 (22868): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-20 13:03:24 (22868): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-20 13:03:24 (22868): Guest Log: BIOS: Booting from Hard Disk...
2025-11-20 13:03:27 (22868): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-20 13:03:27 (22868): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-20 13:03:27 (22868): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-20 13:03:35 (22868): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-20 13:03:35 (22868): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-20 13:03:49 (22868): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-20 13:03:49 (22868): Guest Log: 00:00:00.000146 main     Log opened 2025-11-20T13:03:47.696176000Z
2025-11-20 13:03:49 (22868): Guest Log: 00:00:00.000283 main     OS Product: Linux
2025-11-20 13:03:49 (22868): Guest Log: 00:00:00.000323 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-20 13:03:49 (22868): Guest Log: 00:00:00.000353 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-20 13:03:49 (22868): Guest Log: 00:00:00.000382 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-20 13:03:49 (22868): Guest Log: 00:00:00.000383 main     Process ID: 1349
2025-11-20 13:03:49 (22868): Guest Log: 00:00:00.000383 main     Package type: LINUX_64BITS_GENERIC
2025-11-20 13:03:49 (22868): Guest Log: 00:00:00.001224 main     5.2.32 r132073 started. Verbose level = 0
2025-11-20 13:03:49 (22868): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-20 13:03:49 (22868): Guest Log: [INFO] Mounting shared directory
2025-11-20 13:03:49 (22868): Guest Log: [INFO] Checking for init_data.xml
2025-11-20 13:03:59 (22868): Guest Log: 00:00:10.014076 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 010 910 180 000ns (GuestNow=1 763 661 838 608 623 000 ns GuestLast=1 763 643 827 698 443 000 ns fSetTimeLastLoop=true )
2025-11-20 13:04:01 (22868): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-20 13:04:01 (22868): Guest Log: [INFO] Detected branch: prod
2025-11-20 13:04:03 (22868): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-20 13:04:03 (22868): Guest Log: Copying input files
2025-11-20 13:04:09 (22868): Guest Log: Copied input files into RunAtlas.
2025-11-20 13:04:09 (22868): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-20 13:04:09 (22868): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-20 13:04:09 (22868): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-20 13:04:09 (22868): Guest Log: Further information can be found at the LHC@home message board.
2025-11-20 13:04:19 (22868): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-20 13:04:21 (22868): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-20 13:04:21 (22868): Guest Log: 2.6.3.0 1630 0 30160 153091 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-20 13:04:21 (22868): Guest Log: copied the webapp to /var/www
2025-11-20 13:04:21 (22868): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-20 13:04:21 (22868): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-20 13:04:23 (22868): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-20 13:04:23 (22868): Guest Log:  *** Starting ATLAS job. (PandaID=6893850283 taskID=47523449) ***
2025-11-20 14:57:41 (22868): Status Report: Elapsed Time: '6000.000000'
2025-11-20 14:57:41 (22868): Status Report: CPU Time: '16910.125000'
2025-11-20 17:10:08 (22868): Status Report: Elapsed Time: '12000.000000'
2025-11-20 17:10:08 (22868): Status Report: CPU Time: '38500.281250'
2025-11-20 19:23:19 (22868): Status Report: Elapsed Time: '18000.000000'
2025-11-20 19:23:19 (22868): Status Report: CPU Time: '60114.171875'
2025-11-20 21:48:17 (22868): Status Report: Elapsed Time: '24000.000000'
2025-11-20 21:48:17 (22868): Status Report: CPU Time: '83903.500000'
2025-11-21 00:09:39 (22868): Status Report: Elapsed Time: '30000.000000'
2025-11-21 00:09:39 (22868): Status Report: CPU Time: '107221.562500'
2025-11-21 02:28:01 (22868): Status Report: Elapsed Time: '36000.000000'
2025-11-21 02:28:01 (22868): Status Report: CPU Time: '129976.328125'
2025-11-21 04:44:16 (22868): Status Report: Elapsed Time: '42000.000000'
2025-11-21 04:44:16 (22868): Status Report: CPU Time: '152404.031250'
2025-11-21 07:00:50 (22868): Status Report: Elapsed Time: '48000.000000'
2025-11-21 07:00:50 (22868): Status Report: CPU Time: '174817.812500'
2025-11-21 09:15:04 (22868): Status Report: Elapsed Time: '54000.038679'
2025-11-21 09:15:04 (22868): Status Report: CPU Time: '195215.000000'
2025-11-21 09:15:20 (22868): Guest Log:  *** Job finished ***
2025-11-21 09:15:20 (22868): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:14:54,919 | INFO     | [data] copytool_out thread has finished
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:14:57,917 | INFO     | [data] queue_monitor thread has finished
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:11,947 | INFO     | [monitor] cgroup control has ended
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:14,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140249700505408)>', '<ExcThread(monitor, started 140249120364288)>']
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:14,393 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:14,393 | INFO     | [monitor] control thread has ended
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,051 | INFO     | all workflow threads have been joined
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,051 | INFO     | end of generic workflow (traces error code: 0)
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,051 | INFO     | traces error code: 0
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,051 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,129 [wrapper] ==== pilot stdout END ====
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,133 [wrapper] ==== wrapper stdout RESUME ====
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,138 [wrapper] pilotpid: 6065
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,143 [wrapper] Pilot exit status: 0
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,159 [wrapper] pandaids: 6893850283
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,195 [wrapper] cleanup supervisor_pilot 26136 6066
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,203 [wrapper] Test setup, not cleaning
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,208 [wrapper] apfmon messages muted
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,213 [wrapper] ==== wrapper stdout END ====
2025-11-21 09:15:20 (22868): Guest Log: 2025-11-21 14:15:19,219 [wrapper] ==== wrapper stderr END ====
2025-11-21 09:15:20 (22868): Guest Log:  *** Error codes and diagnostics ***
2025-11-21 09:15:20 (22868): Guest Log:     "exeErrorCode": 0,
2025-11-21 09:15:20 (22868): Guest Log:     "exeErrorDiag": "",
2025-11-21 09:15:20 (22868): Guest Log:     "pilotErrorCode": 0,
2025-11-21 09:15:20 (22868): Guest Log:     "pilotErrorDiag": "",
2025-11-21 09:15:20 (22868): Guest Log:  *** Listing of results directory ***
2025-11-21 09:15:20 (22868): Guest Log: total 918160
2025-11-21 09:15:20 (22868): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 20 11:09 pilot3.tar.gz
2025-11-21 09:15:20 (22868): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 11:20 runpilot2-wrapper.sh
2025-11-21 09:15:20 (22868): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 11:20 queuedata.json
2025-11-21 09:15:20 (22868): Guest Log: -rwxr-xr-x. 1 atlas atlas      9208 Nov 20 18:04 init_data.xml
2025-11-21 09:15:20 (22868): Guest Log: -rwxr-xr-x. 1 atlas atlas    590101 Nov 20 18:04 input.tar.gz
2025-11-21 09:15:20 (22868): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 20 18:04 start_atlas.sh
2025-11-21 09:15:20 (22868): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 20 18:04 EVNT.47493127._000326.pool.root.1 -> /data/./ATLAS.root_0
2025-11-21 09:15:20 (22868): Guest Log: -rw-r--r--. 1 atlas atlas      2786 Nov 20 18:04 pandaJob.out
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas    989472 Nov 20 18:05 agis_schedconf.cvmfs.json
2025-11-21 09:15:20 (22868): Guest Log: drwx------. 5 atlas atlas      4096 Nov 20 18:05 pilot3
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas 915694757 Nov 21 14:13 HITS.47523449._003253.pool.root.1
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas      1046 Nov 21 14:14 memory_monitor_summary.json
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 21 14:14 agis_ddmendpoints.agis.ALL.json
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas   1987690 Nov 21 14:14 log.47523449._003253.job.log.tgz.1
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas        95 Nov 21 14:14 pilot_heartbeat.json
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas      8638 Nov 21 14:14 heartbeat.json
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas      4798 Nov 21 14:15 pilotlog.txt
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas   8335661 Nov 21 14:15 log.47523449._003253.job.log.1
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas       353 Nov 21 14:15 output.list
2025-11-21 09:15:20 (22868): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 21 14:15 runtime_log
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas  10342400 Nov 21 14:15 result.tar.gz
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas       666 Nov 21 14:15 WeJNDmqtHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYcHKDmNaNEWm.diag
2025-11-21 09:15:20 (22868): Guest Log: -rw-r--r--. 1 atlas atlas      8749 Nov 21 14:15 runtime_log.err
2025-11-21 09:15:20 (22868): Guest Log: Looking for outputfile HITS.47523449._003253.pool.root.1
2025-11-21 09:15:20 (22868): Guest Log: HITS file was successfully produced
2025-11-21 09:15:20 (22868): Guest Log: -rw-------. 1 atlas atlas 915694757 Nov 21 14:13 /home/atlas/RunAtlas/HITS.47523449._003253.pool.root.1
2025-11-21 09:15:30 (22868): Guest Log: Successfully finished the ATLAS job!
2025-11-21 09:15:30 (22868): Guest Log: Copying the results back to the shared directory!
2025-11-21 09:15:30 (22868): Guest Log:  *** Contents of shared directory: ***
2025-11-21 09:15:30 (22868): Guest Log: total 1304680
2025-11-21 09:15:30 (22868): Guest Log: -rwxrwxrwx. 1 root root 409327675 Nov 20 18:03 ATLAS.root_0
2025-11-21 09:15:30 (22868): Guest Log: -rwxrwxrwx. 1 root root 915694757 Nov 21 14:15 HITS.pool.root.1
2025-11-21 09:15:30 (22868): Guest Log: -rwxrwxrwx. 1 root root      9208 Nov 20 18:03 init_data.xml
2025-11-21 09:15:30 (22868): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 20 17:37 input.tar.gz
2025-11-21 09:15:30 (22868): Guest Log: -rwxrwxrwx. 1 root root  10342400 Nov 21  2025 result.tar.gz
2025-11-21 09:15:30 (22868): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 20 17:37 start_atlas.sh
2025-11-21 09:15:30 (22868): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-21 09:15:30 (22868): VM Completion File Detected.
2025-11-21 09:15:30 (22868): Powering off VM.
2025-11-21 09:15:33 (22868): Successfully stopped VM.
2025-11-21 09:15:33 (22868): Deregistering VM. (boinc_ab5223d76280520c, slot#6)
2025-11-21 09:15:33 (22868): Removing network bandwidth throttle group from VM.
2025-11-21 09:15:33 (22868): Removing VM from VirtualBox.
2025-11-21 09:15:38 (22868): called boinc_finish(0)

</stderr_txt>
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