Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:10:44 (1142034): wrapper (7.7.26015): starting
23:10:44 (1142034): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 23:10:44] Arguments: --nthreads 8
[2025-11-20 23:10:44] Threads: 8
[2025-11-20 23:10:44] Checking for CVMFS
[2025-11-20 23:10:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:10:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:10:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:10:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:10:44] 2.13.2.0 8649 25212 182888 153106 1 328 24075299 39288832 5326 16776704 0 12663596 99.479 13933055 29104 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 23:10:44] CVMFS is ok
[2025-11-20 23:10:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:10:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:10:44] Further information can be found at the LHC@home message board.
[2025-11-20 23:10:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:10:44] Checking for apptainer binary...
[2025-11-20 23:10:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:10:44] Running /usr/bin/apptainer --version
[2025-11-20 23:10:45] apptainer version 1.4.4-1.el9
[2025-11-20 23:10:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:10:45] c-211-23.aglt2.org
[2025-11-20 23:10:45] apptainer works
[2025-11-20 23:10:45] Set ATHENA_PROC_NUMBER=8
[2025-11-20 23:10:45] Set ATHENA_CORE_NUMBER=8
[2025-11-20 23:10:45] Starting ATLAS job with PandaID=6893834698
[2025-11-20 23:10:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 22:46:35]  *** The last 200 lines of the pilot log: ***
[2025-11-22 22:46:35] 2025-11-23 03:45:32,163 | INFO     | time since job start (171244s) is within the limit (172800.0s)
[2025-11-22 22:46:35] 2025-11-23 03:45:34,170 | INFO     | time since job start (171246s) is within the limit (172800.0s)
[2025-11-22 22:46:35] 2025-11-23 03:45:34,249 | INFO     | monitor loop #7824: job 0:6893834698 is in state 'finished'
[2025-11-22 22:46:35] 2025-11-23 03:45:34,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:46:35] 2025-11-23 03:45:36,195 | INFO     | time since job start (171248s) is within the limit (172800.0s)
[2025-11-22 22:46:35] 2025-11-23 03:45:36,762 | INFO     | monitor loop #7825: job 0:6893834698 is in state 'finished'
[2025-11-22 22:46:35] 2025-11-23 03:45:36,763 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:46:35] 2025-11-23 03:45:38,202 | INFO     | time since job start (171250s) is within the limit (172800.0s)
[2025-11-22 22:46:35] 2025-11-23 03:45:38,655 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 22:46:35] 2025-11-23 03:45:38,730 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.97305
[2025-11-22 22:46:35] 2025-11-23 03:45:38,861 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893834698/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 22:46:35] 2025-11-23 03:45:38,862 | INFO     | extracted standard info from prmon json
[2025-11-22 22:46:35] 2025-11-23 03:45:38,862 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 22:46:35] 2025-11-23 03:45:38,863 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 22:46:35] 2025-11-23 03:45:39,007 | INFO     | fitting pss+swap vs Time
[2025-11-22 22:46:35] 2025-11-23 03:45:39,014 | INFO     | sum of square deviations: 6844225422669.95
[2025-11-22 22:46:35] 2025-11-23 03:45:39,304 | INFO     | monitor loop #7826: job 0:6893834698 is in state 'finished'
[2025-11-22 22:46:35] 2025-11-23 03:45:39,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:46:35] 2025-11-23 03:45:40,287 | INFO     | time since job start (171252s) is within the limit (172800.0s)
[2025-11-22 22:46:35] 2025-11-23 03:45:40,455 | INFO     | sum of deviations: 5344036186554.961
[2025-11-22 22:46:35] 2025-11-23 03:45:40,456 | INFO     | mean x: 1763783883.2937613
[2025-11-22 22:46:35] 2025-11-23 03:45:40,456 | INFO     | mean y: 2997518.2670231727
[2025-11-22 22:46:35] 2025-11-23 03:45:40,456 | INFO     | intersect: -1374181682.5178761
[2025-11-22 22:46:35] 2025-11-23 03:45:40,465 | INFO     | chi2: 32.321946807467
[2025-11-22 22:46:35] 2025-11-23 03:45:40,473 | INFO     | sum of square deviations: 6807700194534.308
[2025-11-22 22:46:35] 2025-11-23 03:45:40,897 | INFO     | sum of deviations: 6299421667212.098
[2025-11-22 22:46:35] 2025-11-23 03:45:40,897 | INFO     | mean x: 1763783730.8057144
[2025-11-22 22:46:35] 2025-11-23 03:45:40,897 | INFO     | mean y: 3001506.544285714
[2025-11-22 22:46:35] 2025-11-23 03:45:40,897 | INFO     | intersect: -1629094081.1894748
[2025-11-22 22:46:35] 2025-11-23 03:45:40,906 | INFO     | chi2: 29.204192441769557
[2025-11-22 22:46:35] 2025-11-23 03:45:40,906 | INFO     | current chi2=29.204192441769557 (change=9.645936193970783 %)
[2025-11-22 22:46:35] 2025-11-23 03:45:40,907 | INFO     | right removable region: 2799
[2025-11-22 22:46:35] 2025-11-23 03:45:40,913 | INFO     | sum of square deviations: 6807688227698.48
[2025-11-22 22:46:35] 2025-11-23 03:45:41,953 | INFO     | monitor loop #7827: job 0:6893834698 is in state 'finished'
[2025-11-22 22:46:35] 2025-11-23 03:45:41,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 22:46:35] 2025-11-23 03:45:41,972 | INFO     | sum of deviations: 4353995406276.521
[2025-11-22 22:46:35] 2025-11-23 03:45:41,972 | INFO     | mean x: 1763784035.8067858
[2025-11-22 22:46:35] 2025-11-23 03:45:41,973 | INFO     | mean y: 3001650.215357143
[2025-11-22 22:46:35] 2025-11-23 03:45:41,973 | INFO     | intersect: -1125062287.6014414
[2025-11-22 22:46:35] 2025-11-23 03:45:41,976 | INFO     | chi2: 29.38262956655751
[2025-11-22 22:46:35] 2025-11-23 03:45:41,976 | INFO     | current chi2=29.38262956655751 (change=9.093874383304316 %)
[2025-11-22 22:46:35] 2025-11-23 03:45:41,976 | INFO     | left removable region: 10
[2025-11-22 22:46:35] 2025-11-23 03:45:41,979 | INFO     | sum of square deviations: 6727779303764.224
[2025-11-22 22:46:35] 2025-11-23 03:45:43,041 | INFO     | sum of deviations: 5129605660589.517
[2025-11-22 22:46:35] 2025-11-23 03:45:43,042 | INFO     | mean x: 1763784005.3338113
[2025-11-22 22:46:35] 2025-11-23 03:45:43,043 | INFO     | mean y: 3007918.855503765
[2025-11-22 22:46:35] 2025-11-23 03:45:43,043 | INFO     | intersect: -1341791904.2830822
[2025-11-22 22:46:35] 2025-11-23 03:45:43,059 | INFO     | chi2: 25.315419953142488
[2025-11-22 22:46:35] 2025-11-23 03:45:43,059 | INFO     | current memory leak: 0.76 B/s (using 2789 data points, chi2=25.32)
[2025-11-22 22:46:35] 2025-11-23 03:45:43,061 | INFO     | could have reported an average CPU frequency of 2899 MHz (95 samples)
[2025-11-22 22:46:35] 2025-11-23 03:45:43,061 | INFO     | ..............................
[2025-11-22 22:46:35] 2025-11-23 03:45:43,069 | INFO     | . Timing measurements:
[2025-11-22 22:46:35] 2025-11-23 03:45:43,070 | INFO     | . get job = 0 s
[2025-11-22 22:46:35] 2025-11-23 03:45:43,070 | INFO     | . initial setup = 5 s
[2025-11-22 22:46:35] 2025-11-23 03:45:43,070 | INFO     | . payload setup = 19 s
[2025-11-22 22:46:35] 2025-11-23 03:45:43,070 | INFO     | . stage-in = 0 s
[2025-11-22 22:46:35] 2025-11-23 03:45:43,070 | INFO     | . payload execution = 171110 s
[2025-11-22 22:46:35] 2025-11-23 03:45:43,070 | INFO     | . stage-out = 23 s
[2025-11-22 22:46:35] 2025-11-23 03:45:43,070 | INFO     | . log creation = 4 s
[2025-11-22 22:46:35] 2025-11-23 03:45:43,071 | INFO     | ..............................
[2025-11-22 22:46:35] 2025-11-23 03:45:44,188 | INFO     | 
[2025-11-22 22:46:35] 2025-11-23 03:45:44,189 | INFO     | job summary report
[2025-11-22 22:46:35] 2025-11-23 03:45:44,189 | INFO     | --------------------------------------------------
[2025-11-22 22:46:35] 2025-11-23 03:45:44,189 | INFO     | PanDA job id: 6893834698
[2025-11-22 22:46:35] 2025-11-23 03:45:44,189 | INFO     | task id: 47523449
[2025-11-22 22:46:35] 2025-11-23 03:45:44,189 | INFO     | errors: (none)
[2025-11-22 22:46:35] 2025-11-23 03:45:44,189 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 22:46:35] 2025-11-23 03:45:44,190 | INFO     | pilot state: finished 
[2025-11-22 22:46:35] 2025-11-23 03:45:44,190 | INFO     | transexitcode: 0
[2025-11-22 22:46:35] 2025-11-23 03:45:44,190 | INFO     | exeerrorcode: 0
[2025-11-22 22:46:35] 2025-11-23 03:45:44,190 | INFO     | exeerrordiag: 
[2025-11-22 22:46:35] 2025-11-23 03:45:44,190 | INFO     | exitcode: 0
[2025-11-22 22:46:35] 2025-11-23 03:45:44,190 | INFO     | exitmsg: OK
[2025-11-22 22:46:35] 2025-11-23 03:45:44,190 | INFO     | cpuconsumptiontime: 496771 s
[2025-11-22 22:46:35] 2025-11-23 03:45:44,191 | INFO     | nevents: 1000
[2025-11-22 22:46:35] 2025-11-23 03:45:44,191 | INFO     | neventsw: 0
[2025-11-22 22:46:35] 2025-11-23 03:45:44,191 | INFO     | pid: 1160911
[2025-11-22 22:46:35] 2025-11-23 03:45:44,191 | INFO     | pgrp: 1160911
[2025-11-22 22:46:35] 2025-11-23 03:45:44,191 | INFO     | corecount: 8
[2025-11-22 22:46:35] 2025-11-23 03:45:44,191 | INFO     | event service: False
[2025-11-22 22:46:35] 2025-11-23 03:45:44,191 | INFO     | sizes: {0: 2297975, 1: 2298660, 2: 2298859, 13: 2298859, 19: 2299177, 24: 2299205, 171131: 2396938, 171134: 2396937, 171159: 2405987, 171161: 2406043, 171216: 2406
[2025-11-22 22:46:35] 2025-11-23 03:45:44,192 | INFO     | --------------------------------------------------
[2025-11-22 22:46:35] 2025-11-23 03:45:44,192 | INFO     | 
[2025-11-22 22:46:35] 2025-11-23 03:45:44,192 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 22:46:35] 2025-11-23 03:45:44,489 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,489 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,489 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,489 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,490 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,490 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,504 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,508 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 22:46:35] 2025-11-23 03:45:44,510 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,510 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 22:46:35] 2025-11-23 03:45:44,510 | INFO     | job 6893834698 has completed (purged errors)
[2025-11-22 22:46:35] 2025-11-23 03:45:44,510 | INFO     | overall cleanup function is called
[2025-11-22 22:46:35] 2025-11-23 03:45:45,966 | INFO     | --- collectZombieJob: --- 10, [1160911]
[2025-11-22 22:46:35] 2025-11-23 03:45:45,967 | INFO     | zombie collector waiting for pid 1160911
[2025-11-22 22:46:35] 2025-11-23 03:45:45,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 22:46:35] 2025-11-23 03:45:45,967 | INFO     | collected zombie processes
[2025-11-22 22:46:35] 2025-11-23 03:45:45,967 | INFO     | will attempt to kill all subprocesses of pid=1160911
[2025-11-22 22:46:35] 2025-11-23 03:45:49,382 | INFO     | PID=1146625 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 22:46:35] 2025-11-23 03:45:49,382 | INFO     | .. there are 31 such processes running
[2025-11-22 22:46:35] 2025-11-23 03:45:53,007 | INFO     | process IDs to be killed: [1160911] (in reverse order)
[2025-11-22 22:46:35] 2025-11-23 03:45:53,399 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 22:46:35] 2025-11-23 03:45:53,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 22:46:35] 2025-11-23 03:45:53,589 | INFO     | did not find any defunct processes belonging to 1160911
[2025-11-22 22:46:35] 2025-11-23 03:45:53,626 | INFO     | did not find any defunct processes belonging to 1160911
[2025-11-22 22:46:35] 2025-11-23 03:45:53,628 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 22:46:35] 2025-11-23 03:45:53,629 | INFO     | ready for new job
[2025-11-22 22:46:35] 2025-11-23 03:45:53,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 22:46:35] 2025-11-23 03:45:53,639 | INFO     | ***************************************
[2025-11-22 22:46:35] 2025-11-23 03:45:53,640 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 22:46:35] 2025-11-23 03:45:53,640 | INFO     | ***************************************
[2025-11-22 22:46:35] 2025-11-23 03:45:53,640 | INFO     | 
[2025-11-22 22:46:35] 2025-11-23 03:45:53,642 | INFO     | architecture information:
[2025-11-22 22:46:35] 2025-11-23 03:45:53,643 | INFO     | executing command: cat /etc/os-release
[2025-11-22 22:46:35] 2025-11-23 03:45:53,781 | INFO     | cat /etc/os-release:
[2025-11-22 22:46:35] NAME="CentOS Linux"
[2025-11-22 22:46:35] VERSION="7 (Core)"
[2025-11-22 22:46:35] ID="centos"
[2025-11-22 22:46:35] ID_LIKE="rhel fedora"
[2025-11-22 22:46:35] VERSION_ID="7"
[2025-11-22 22:46:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 22:46:35] ANSI_COLOR="0;31"
[2025-11-22 22:46:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 22:46:35] HOME_URL="https://www.centos.org/"
[2025-11-22 22:46:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 22:46:35] 
[2025-11-22 22:46:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 22:46:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 22:46:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 22:46:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 22:46:35] 
[2025-11-22 22:46:35] 2025-11-23 03:45:53,784 | INFO     | ***************************************
[2025-11-22 22:46:35] 2025-11-23 03:45:54,287 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 22:46:35] 2025-11-23 03:45:54,464 | INFO     | sufficient remaining disk space (48351936512 B)
[2025-11-22 22:46:35] 2025-11-23 03:45:54,464 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 22:46:35] 2025-11-23 03:45:54,464 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 22:46:35] 2025-11-23 03:45:54,465 | INFO     | update_server=False
[2025-11-22 22:46:35] 2025-11-23 03:45:54,465 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 22:46:35] 2025-11-23 03:45:54,482 | INFO     | all payload control threads have been joined
[2025-11-22 22:46:35] 2025-11-23 03:45:54,487 | INFO     | all data control threads have been joined
[2025-11-22 22:46:35] 2025-11-23 03:45:54,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 22:46:35] 2025-11-23 03:45:54,775 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 22:46:35] 2025-11-23 03:45:54,776 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 22:46:35] 2025-11-23 03:45:54,776 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:46:35] 2025-11-23 03:45:54,776 | INFO     | will abort loop
[2025-11-22 22:46:35] 2025-11-23 03:45:55,470 | INFO     | [job] retrieve thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,488 | INFO     | [payload] control thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,493 | INFO     | [data] control thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,564 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 22:46:35] 2025-11-23 03:45:55,590 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,591 | INFO     | [data] copytool_in thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,798 | INFO     | [job] job monitor thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,803 | INFO     | [payload] validate_post thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,922 | INFO     | [payload] failed_post thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:55,996 | INFO     | all job control threads have been joined
[2025-11-22 22:46:35] 2025-11-23 03:45:56,219 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:56,559 | INFO     | [data] copytool_out thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:56,987 | INFO     | [job] validate thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:56,988 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:57,004 | INFO     | [job] control thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:57,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 22:46:35] 2025-11-23 03:45:58,489 | INFO     | [job] queue monitor thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:45:59,581 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 22:46:35] 2025-11-23 03:46:26,475 | INFO     | [monitor] cgroup control has ended
[2025-11-22 22:46:35] 2025-11-23 03:46:26,640 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139657121617728)>', '<ExcThread(monitor, started 139656632989440)>']
[2025-11-22 22:46:35] 2025-11-23 03:46:28,280 | INFO     | PID=1146625 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 22:46:35] 2025-11-23 03:46:28,284 | INFO     | .. there are 31 such processes running
[2025-11-22 22:46:35] 2025-11-23 03:46:28,285 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 22:46:35] 2025-11-23 03:46:28,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 22:46:35] 2025-11-23 03:46:28,285 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 22:46:35] 2025-11-23 03:46:28,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 22:46:35] 2025-11-23 03:46:28,285 | INFO     | [monitor] control thread has ended
[2025-11-22 22:46:35] 2025-11-23 03:46:31,666 | INFO     | all workflow threads have been joined
[2025-11-22 22:46:35] 2025-11-23 03:46:31,667 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 22:46:35] 2025-11-23 03:46:31,667 | INFO     | traces error code: 0
[2025-11-22 22:46:35] 2025-11-23 03:46:31,667 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 22:46:35] 2025-11-23 03:46:32,794 [wrapper] ==== pilot stdout END ====
[2025-11-22 22:46:35] 2025-11-23 03:46:32,841 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 22:46:35] 2025-11-23 03:46:32,889 [wrapper] pilotpid: 1146625
[2025-11-22 22:46:35] 2025-11-23 03:46:32,921 [wrapper] Pilot exit status: 0
[2025-11-22 22:46:35] 2025-11-23 03:46:33,071 [wrapper] pandaids: 6893834698
[2025-11-22 22:46:35] 2025-11-23 03:46:34,099 [wrapper] cleanup supervisor_pilot 2654913 1146626
[2025-11-22 22:46:35] 2025-11-23 03:46:34,163 [wrapper] Test setup, not cleaning
[2025-11-22 22:46:35] 2025-11-23 03:46:34,236 [wrapper] apfmon messages muted
[2025-11-22 22:46:35] 2025-11-23 03:46:34,300 [wrapper] ==== wrapper stdout END ====
[2025-11-22 22:46:35] 2025-11-23 03:46:34,363 [wrapper] ==== wrapper stderr END ====
[2025-11-22 22:46:35]  *** Error codes and diagnostics ***
[2025-11-22 22:46:35]     "exeErrorCode": 0,
[2025-11-22 22:46:35]     "exeErrorDiag": "",
[2025-11-22 22:46:35]     "pilotErrorCode": 0,
[2025-11-22 22:46:35]     "pilotErrorDiag": "",
[2025-11-22 22:46:35]  *** Listing of results directory ***
[2025-11-22 22:46:35] total 1334512
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:13 queuedata.json
[2025-11-22 22:46:35] -rwx------. 1 boincer umatlas     36292 Nov 20 05:13 runpilot2-wrapper.sh
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas       100 Nov 20 23:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 22:46:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 23:10 run_atlas
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas       105 Nov 20 23:10 job.xml
[2025-11-22 22:46:35] -rw-r--r--. 2 boincer umatlas 408246990 Nov 20 23:10 EVNT.47493127._000072.pool.root.1
[2025-11-22 22:46:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 23:10 start_atlas.sh
[2025-11-22 22:46:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 23:10 shared
[2025-11-22 22:46:35] -rw-r--r--. 2 boincer umatlas    590100 Nov 20 23:10 input.tar.gz
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas         0 Nov 20 23:10 boinc_lockfile
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas      2784 Nov 20 23:10 pandaJob.out
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas        57 Nov 20 23:10 setup.sh.local
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas    989817 Nov 20 23:11 agis_schedconf.cvmfs.json
[2025-11-22 22:46:35] drwx------. 5 boincer umatlas      4096 Nov 20 23:11 pilot3
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas       534 Nov 22 21:41 boinc_task_state.xml
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas      6526 Nov 22 22:37 init_data.xml
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas 911604824 Nov 22 22:42 HITS.47523449._000718.pool.root.1
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas      1061 Nov 22 22:44 memory_monitor_summary.json
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas   1526164 Nov 22 22:44 agis_ddmendpoints.agis.ALL.json
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas   3220698 Nov 22 22:44 log.47523449._000718.job.log.tgz.1
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas      8616 Nov 22 22:45 heartbeat.json
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas        95 Nov 22 22:45 pilot_heartbeat.json
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas      5010 Nov 22 22:46 pilotlog.txt
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas  18162486 Nov 22 22:46 log.47523449._000718.job.log.1
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 22:46 boinc_mmap_file
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas        30 Nov 22 22:46 wrapper_checkpoint.txt
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas       353 Nov 22 22:46 output.list
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas       620 Nov 22 22:46 runtime_log
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas  21401600 Nov 22 22:46 result.tar.gz
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas      9344 Nov 22 22:46 runtime_log.err
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas       665 Nov 22 22:46 8AKKDmlqGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjGGKDmEZ9Jun.diag
[2025-11-22 22:46:35] -rw-r--r--. 1 boincer umatlas     21860 Nov 22 22:46 stderr.txt
[2025-11-22 22:46:35] HITS file was successfully produced:
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas 911604824 Nov 22 22:42 shared/HITS.pool.root.1
[2025-11-22 22:46:35]  *** Contents of shared directory: ***
[2025-11-22 22:46:35] total 1310420
[2025-11-22 22:46:35] -rw-r--r--. 2 boincer umatlas 408246990 Nov 20 23:10 ATLAS.root_0
[2025-11-22 22:46:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 23:10 start_atlas.sh
[2025-11-22 22:46:35] -rw-r--r--. 2 boincer umatlas    590100 Nov 20 23:10 input.tar.gz
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas 911604824 Nov 22 22:42 HITS.pool.root.1
[2025-11-22 22:46:35] -rw-------. 1 boincer umatlas  21401600 Nov 22 22:46 result.tar.gz
22:46:36 (1142034): run_atlas exited; CPU time 502515.631190
22:46:36 (1142034): called boinc_finish(0)

</stderr_txt>
]]>

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