Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:57:32 (2032416): wrapper (7.7.26015): starting
20:57:32 (2032416): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:57:32] Arguments: --nthreads 8
[2025-11-20 20:57:32] Threads: 8
[2025-11-20 20:57:32] Checking for CVMFS
[2025-11-20 20:57:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:57:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:57:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:57:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:57:33] 2.13.2.0 37103 25880 204624 153103 2 239 31356023 40960000 8724 16776704 0 34742042 99.582 35377112 21756 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 20:57:33] CVMFS is ok
[2025-11-20 20:57:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 20:57:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 20:57:33] Further information can be found at the LHC@home message board.
[2025-11-20 20:57:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:57:33] Checking for apptainer binary...
[2025-11-20 20:57:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:57:33] Running /usr/bin/apptainer --version
[2025-11-20 20:57:33] apptainer version 1.4.4-1.el9
[2025-11-20 20:57:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:57:33] c-211-9.aglt2.org
[2025-11-20 20:57:33] apptainer works
[2025-11-20 20:57:34] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:57:34] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:57:34] Starting ATLAS job with PandaID=6893850235
[2025-11-20 20:57:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:00:08 (2032416): BOINC client no longer exists - exiting
00:00:08 (2032416): timer handler: client dead, exiting
00:00:14 (2420732): wrapper (7.7.26015): starting
00:00:14 (2420732): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:00:14] Arguments: --nthreads 9
[2025-11-21 00:00:14] Threads: 9
[2025-11-21 00:00:14] This job has been restarted, cleaning up previous attempt
[2025-11-21 00:00:14] Checking for CVMFS
[2025-11-21 00:00:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:00:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:00:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:00:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:00:15] 2.13.2.0 37103 26063 204052 153108 3 120 31568394 40960000 6402 16776704 0 35165272 99.587 35389178 21758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:00:15] CVMFS is ok
[2025-11-21 00:00:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:00:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:00:15] Further information can be found at the LHC@home message board.
[2025-11-21 00:00:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:00:15] Checking for apptainer binary...
[2025-11-21 00:00:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:00:15] Running /usr/bin/apptainer --version
[2025-11-21 00:00:15] apptainer version 1.4.4-1.el9
[2025-11-21 00:00:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:00:15] c-211-9.aglt2.org
[2025-11-21 00:00:15] apptainer works
[2025-11-21 00:00:15] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:00:15] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:00:15] Starting ATLAS job with PandaID=6893850235
[2025-11-21 00:00:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 06:48:14]  *** The last 200 lines of the pilot log: ***
[2025-11-22 06:48:14] 2025-11-22 11:47:23,861 | INFO     | time since job start (110816s) is within the limit (172800.0s)
[2025-11-22 06:48:14] 2025-11-22 11:47:25,874 | INFO     | time since job start (110818s) is within the limit (172800.0s)
[2025-11-22 06:48:14] 2025-11-22 11:47:26,145 | INFO     | monitor loop #6268: job 0:6893850235 is in state 'finished'
[2025-11-22 06:48:14] 2025-11-22 11:47:26,145 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:48:14] 2025-11-22 11:47:27,881 | INFO     | time since job start (110820s) is within the limit (172800.0s)
[2025-11-22 06:48:14] 2025-11-22 11:47:28,650 | INFO     | monitor loop #6269: job 0:6893850235 is in state 'finished'
[2025-11-22 06:48:14] 2025-11-22 11:47:28,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:48:14] 2025-11-22 11:47:29,908 | INFO     | time since job start (110822s) is within the limit (172800.0s)
[2025-11-22 06:48:14] 2025-11-22 11:47:31,158 | INFO     | monitor loop #6270: job 0:6893850235 is in state 'finished'
[2025-11-22 06:48:14] 2025-11-22 11:47:31,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:48:14] 2025-11-22 11:47:31,958 | INFO     | time since job start (110824s) is within the limit (172800.0s)
[2025-11-22 06:48:14] 2025-11-22 11:47:33,466 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 06:48:14] 2025-11-22 11:47:33,518 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2578.231270833333
[2025-11-22 06:48:14] 2025-11-22 11:47:33,624 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6893850235/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 06:48:14] 2025-11-22 11:47:33,625 | INFO     | extracted standard info from prmon json
[2025-11-22 06:48:14] 2025-11-22 11:47:33,625 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 06:48:14] 2025-11-22 11:47:33,625 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 06:48:14] 2025-11-22 11:47:33,678 | INFO     | monitor loop #6271: job 0:6893850235 is in state 'finished'
[2025-11-22 06:48:14] 2025-11-22 11:47:33,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:48:14] 2025-11-22 11:47:34,053 | INFO     | fitting pss+swap vs Time
[2025-11-22 06:48:14] 2025-11-22 11:47:34,056 | INFO     | sum of square deviations: 1857700784984.7075
[2025-11-22 06:48:14] 2025-11-22 11:47:35,126 | INFO     | sum of deviations: 5155597824949.153
[2025-11-22 06:48:14] 2025-11-22 11:47:35,126 | INFO     | mean x: 1763756622.7626653
[2025-11-22 06:48:14] 2025-11-22 11:47:35,126 | INFO     | mean y: 3118419.905286344
[2025-11-22 06:48:14] 2025-11-22 11:47:35,126 | INFO     | intersect: -4891760174.9431925
[2025-11-22 06:48:14] 2025-11-22 11:47:35,152 | INFO     | chi2: 21.815727756810087
[2025-11-22 06:48:14] 2025-11-22 11:47:35,155 | INFO     | sum of square deviations: 1842406743150.8538
[2025-11-22 06:48:14] 2025-11-22 11:47:36,113 | INFO     | sum of deviations: 5803005553213.367
[2025-11-22 06:48:14] 2025-11-22 11:47:36,114 | INFO     | mean x: 1763756470.277195
[2025-11-22 06:48:14] 2025-11-22 11:47:36,135 | INFO     | mean y: 3124873.9315295415
[2025-11-22 06:48:14] 2025-11-22 11:47:36,136 | INFO     | intersect: -5552156895.191117
[2025-11-22 06:48:14] 2025-11-22 11:47:36,139 | INFO     | chi2: 18.61275807014808
[2025-11-22 06:48:14] 2025-11-22 11:47:36,139 | INFO     | current chi2=18.61275807014808 (change=14.681929121810555 %)
[2025-11-22 06:48:14] 2025-11-22 11:47:36,159 | INFO     | right removable region: 1810
[2025-11-22 06:48:14] 2025-11-22 11:47:36,162 | INFO     | sum of square deviations: 1842397700157.3064
[2025-11-22 06:48:14] 2025-11-22 11:47:36,312 | INFO     | monitor loop #6272: job 0:6893850235 is in state 'finished'
[2025-11-22 06:48:14] 2025-11-22 11:47:36,312 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 06:48:14] 2025-11-22 11:47:37,268 | INFO     | sum of deviations: 4592731389352.433
[2025-11-22 06:48:14] 2025-11-22 11:47:37,268 | INFO     | mean x: 1763756775.2932081
[2025-11-22 06:48:14] 2025-11-22 11:47:37,268 | INFO     | mean y: 3124026.8729983433
[2025-11-22 06:48:14] 2025-11-22 11:47:37,268 | INFO     | intersect: -4393571162.434128
[2025-11-22 06:48:14] 2025-11-22 11:47:37,290 | INFO     | chi2: 19.55138089419792
[2025-11-22 06:48:14] 2025-11-22 11:47:37,291 | INFO     | current chi2=19.55138089419792 (change=10.379423908539197 %)
[2025-11-22 06:48:14] 2025-11-22 11:47:37,291 | INFO     | left removable region: 10
[2025-11-22 06:48:14] 2025-11-22 11:47:37,314 | INFO     | sum of square deviations: 1809039284553.996
[2025-11-22 06:48:14] 2025-11-22 11:47:38,280 | INFO     | sum of deviations: 5156567899299.053
[2025-11-22 06:48:14] 2025-11-22 11:47:38,281 | INFO     | mean x: 1763756744.835
[2025-11-22 06:48:14] 2025-11-22 11:47:38,281 | INFO     | mean y: 3133816.1483333334
[2025-11-22 06:48:14] 2025-11-22 11:47:38,281 | INFO     | intersect: -5024358671.296809
[2025-11-22 06:48:14] 2025-11-22 11:47:38,284 | INFO     | chi2: 15.601808594288805
[2025-11-22 06:48:14] 2025-11-22 11:47:38,284 | INFO     | current memory leak: 2.85 B/s (using 1800 data points, chi2=15.60)
[2025-11-22 06:48:14] 2025-11-22 11:47:38,286 | INFO     | could have reported an average CPU frequency of 2664 MHz (64 samples)
[2025-11-22 06:48:14] 2025-11-22 11:47:38,287 | INFO     | ..............................
[2025-11-22 06:48:14] 2025-11-22 11:47:38,287 | INFO     | . Timing measurements:
[2025-11-22 06:48:14] 2025-11-22 11:47:38,287 | INFO     | . get job = 0 s
[2025-11-22 06:48:14] 2025-11-22 11:47:38,287 | INFO     | . initial setup = 2 s
[2025-11-22 06:48:14] 2025-11-22 11:47:38,287 | INFO     | . payload setup = 6 s
[2025-11-22 06:48:14] 2025-11-22 11:47:38,287 | INFO     | . stage-in = 0 s
[2025-11-22 06:48:14] 2025-11-22 11:47:38,288 | INFO     | . payload execution = 110753 s
[2025-11-22 06:48:14] 2025-11-22 11:47:38,288 | INFO     | . stage-out = 11 s
[2025-11-22 06:48:14] 2025-11-22 11:47:38,288 | INFO     | . log creation = 4 s
[2025-11-22 06:48:14] 2025-11-22 11:47:38,288 | INFO     | ..............................
[2025-11-22 06:48:14] 2025-11-22 11:47:38,460 | INFO     | PID=2433768 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 06:48:14] 2025-11-22 11:47:38,460 | INFO     | .. there are 15 such processes running
[2025-11-22 06:48:14] 2025-11-22 11:47:38,516 | INFO     | 
[2025-11-22 06:48:14] 2025-11-22 11:47:38,516 | INFO     | job summary report
[2025-11-22 06:48:14] 2025-11-22 11:47:38,516 | INFO     | --------------------------------------------------
[2025-11-22 06:48:14] 2025-11-22 11:47:38,516 | INFO     | PanDA job id: 6893850235
[2025-11-22 06:48:14] 2025-11-22 11:47:38,516 | INFO     | task id: 47523449
[2025-11-22 06:48:14] 2025-11-22 11:47:38,517 | INFO     | errors: (none)
[2025-11-22 06:48:14] 2025-11-22 11:47:38,517 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 06:48:14] 2025-11-22 11:47:38,517 | INFO     | pilot state: finished 
[2025-11-22 06:48:14] 2025-11-22 11:47:38,517 | INFO     | transexitcode: 0
[2025-11-22 06:48:14] 2025-11-22 11:47:38,517 | INFO     | exeerrorcode: 0
[2025-11-22 06:48:14] 2025-11-22 11:47:38,517 | INFO     | exeerrordiag: 
[2025-11-22 06:48:14] 2025-11-22 11:47:38,517 | INFO     | exitcode: 0
[2025-11-22 06:48:14] 2025-11-22 11:47:38,517 | INFO     | exitmsg: OK
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | cpuconsumptiontime: 336823 s
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | nevents: 1000
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | neventsw: 0
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | pid: 2460646
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | pgrp: 2460646
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | corecount: 9
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | event service: False
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | sizes: {0: 2298807, 1: 2298807, 5: 2299097, 11: 2299153, 110762: 2375087, 110763: 2375086, 110776: 2384264, 110779: 2384320, 110816: 2384566}
[2025-11-22 06:48:14] 2025-11-22 11:47:38,518 | INFO     | --------------------------------------------------
[2025-11-22 06:48:14] 2025-11-22 11:47:38,519 | INFO     | 
[2025-11-22 06:48:14] 2025-11-22 11:47:38,519 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-22 06:48:14] 2025-11-22 11:47:38,547 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,547 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,547 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,547 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,547 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,547 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,548 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,549 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 06:48:14] 2025-11-22 11:47:38,549 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,549 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 06:48:14] 2025-11-22 11:47:38,549 | INFO     | job 6893850235 has completed (purged errors)
[2025-11-22 06:48:14] 2025-11-22 11:47:38,550 | INFO     | overall cleanup function is called
[2025-11-22 06:48:14] 2025-11-22 11:47:39,674 | INFO     | --- collectZombieJob: --- 10, [2460646]
[2025-11-22 06:48:14] 2025-11-22 11:47:39,674 | INFO     | zombie collector waiting for pid 2460646
[2025-11-22 06:48:14] 2025-11-22 11:47:39,675 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 06:48:14] 2025-11-22 11:47:39,675 | INFO     | collected zombie processes
[2025-11-22 06:48:14] 2025-11-22 11:47:39,675 | INFO     | will attempt to kill all subprocesses of pid=2460646
[2025-11-22 06:48:14] 2025-11-22 11:47:40,699 | INFO     | process IDs to be killed: [2460646] (in reverse order)
[2025-11-22 06:48:14] 2025-11-22 11:47:40,887 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 06:48:14] 2025-11-22 11:47:40,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 06:48:14] 2025-11-22 11:47:40,914 | INFO     | did not find any defunct processes belonging to 2460646
[2025-11-22 06:48:14] 2025-11-22 11:47:40,925 | INFO     | did not find any defunct processes belonging to 2460646
[2025-11-22 06:48:14] 2025-11-22 11:47:40,927 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 06:48:14] 2025-11-22 11:47:40,927 | INFO     | ready for new job
[2025-11-22 06:48:14] 2025-11-22 11:47:40,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 06:48:14] 2025-11-22 11:47:40,933 | INFO     | ***************************************
[2025-11-22 06:48:14] 2025-11-22 11:47:40,933 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 06:48:14] 2025-11-22 11:47:40,934 | INFO     | ***************************************
[2025-11-22 06:48:14] 2025-11-22 11:47:40,934 | INFO     | 
[2025-11-22 06:48:14] 2025-11-22 11:47:40,937 | INFO     | architecture information:
[2025-11-22 06:48:14] 2025-11-22 11:47:40,942 | INFO     | executing command: cat /etc/os-release
[2025-11-22 06:48:14] 2025-11-22 11:47:41,003 | INFO     | cat /etc/os-release:
[2025-11-22 06:48:14] NAME="CentOS Linux"
[2025-11-22 06:48:14] VERSION="7 (Core)"
[2025-11-22 06:48:14] ID="centos"
[2025-11-22 06:48:14] ID_LIKE="rhel fedora"
[2025-11-22 06:48:14] VERSION_ID="7"
[2025-11-22 06:48:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 06:48:14] ANSI_COLOR="0;31"
[2025-11-22 06:48:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 06:48:14] HOME_URL="https://www.centos.org/"
[2025-11-22 06:48:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 06:48:14] 
[2025-11-22 06:48:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 06:48:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 06:48:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 06:48:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 06:48:14] 
[2025-11-22 06:48:14] 2025-11-22 11:47:41,004 | INFO     | ***************************************
[2025-11-22 06:48:14] 2025-11-22 11:47:41,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-22 06:48:14] 2025-11-22 11:47:41,780 | INFO     | sufficient remaining disk space (61450747904 B)
[2025-11-22 06:48:14] 2025-11-22 11:47:41,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 06:48:14] 2025-11-22 11:47:41,780 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 06:48:14] 2025-11-22 11:47:41,781 | INFO     | update_server=False
[2025-11-22 06:48:14] 2025-11-22 11:47:41,781 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 06:48:14] 2025-11-22 11:47:41,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 06:48:14] 2025-11-22 11:47:42,068 | INFO     | all data control threads have been joined
[2025-11-22 06:48:14] 2025-11-22 11:47:42,381 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 06:48:14] 2025-11-22 11:47:42,382 | INFO     | aborting loop
[2025-11-22 06:48:14] 2025-11-22 11:47:42,786 | INFO     | [job] retrieve thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:42,946 | INFO     | [payload] failed_post thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:42,986 | INFO     | [job] validate thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,022 | INFO     | all payload control threads have been joined
[2025-11-22 06:48:14] 2025-11-22 11:47:43,059 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,085 | INFO     | [data] control thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,261 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,373 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 06:48:14] 2025-11-22 11:47:43,387 | INFO     | [job] job monitor thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,397 | INFO     | all job control threads have been joined
[2025-11-22 06:48:14] 2025-11-22 11:47:43,434 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,462 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,546 | INFO     | [data] copytool_in thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,580 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 06:48:14] 2025-11-22 11:47:43,683 | INFO     | [payload] validate_post thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:43,802 | INFO     | [data] copytool_out thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:44,028 | INFO     | [payload] control thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:44,403 | INFO     | [job] control thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:44,586 | INFO     | [job] queue monitor thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:47,393 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 06:48:14] 2025-11-22 11:47:57,289 | INFO     | [monitor] cgroup control has ended
[2025-11-22 06:48:14] 2025-11-22 11:47:58,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664610445120)>', '<ExcThread(monitor, started 139664107218688)>']
[2025-11-22 06:48:14] 2025-11-22 11:48:03,054 | INFO     | all workflow threads have been joined
[2025-11-22 06:48:14] 2025-11-22 11:48:03,055 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 06:48:14] 2025-11-22 11:48:03,055 | INFO     | traces error code: 0
[2025-11-22 06:48:14] 2025-11-22 11:48:03,055 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 06:48:14] 2025-11-22 11:48:11,060 | INFO     | PID=2433768 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 06:48:14] 2025-11-22 11:48:11,060 | INFO     | .. there are 15 such processes running
[2025-11-22 06:48:14] 2025-11-22 11:48:11,061 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 06:48:14] 2025-11-22 11:48:11,061 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 06:48:14] 2025-11-22 11:48:11,061 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 06:48:14] 2025-11-22 11:48:11,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 06:48:14] 2025-11-22 11:48:11,061 | INFO     | [monitor] control thread has ended
[2025-11-22 06:48:14] 2025-11-22 11:48:11,456 [wrapper] ==== pilot stdout END ====
[2025-11-22 06:48:14] 2025-11-22 11:48:11,522 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 06:48:14] 2025-11-22 11:48:11,562 [wrapper] pilotpid: 2433768
[2025-11-22 06:48:14] 2025-11-22 11:48:11,612 [wrapper] Pilot exit status: 0
[2025-11-22 06:48:14] 2025-11-22 11:48:11,859 [wrapper] pandaids: 6893850235 6893850235
[2025-11-22 06:48:14] 2025-11-22 11:48:12,300 [wrapper] cleanup supervisor_pilot 2036017 2433771
[2025-11-22 06:48:14] 2025-11-22 11:48:12,355 [wrapper] Test setup, not cleaning
[2025-11-22 06:48:14] 2025-11-22 11:48:12,418 [wrapper] apfmon messages muted
[2025-11-22 06:48:14] 2025-11-22 11:48:12,465 [wrapper] ==== wrapper stdout END ====
[2025-11-22 06:48:14] 2025-11-22 11:48:12,547 [wrapper] ==== wrapper stderr END ====
[2025-11-22 06:48:14]  *** Error codes and diagnostics ***
[2025-11-22 06:48:14]     "exeErrorCode": 0,
[2025-11-22 06:48:14]     "exeErrorDiag": "",
[2025-11-22 06:48:14]     "pilotErrorCode": 0,
[2025-11-22 06:48:14]     "pilotErrorDiag": "",
[2025-11-22 06:48:14]  *** Listing of results directory ***
[2025-11-22 06:48:14] total 1735860
[2025-11-22 06:48:14] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:15 queuedata.json
[2025-11-22 06:48:14] -rwx------. 1 boincer umatlas     36292 Nov 20 06:16 runpilot2-wrapper.sh
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas       100 Nov 20 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 06:48:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 20:57 run_atlas
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas       105 Nov 20 20:57 job.xml
[2025-11-22 06:48:14] -rw-r--r--. 3 boincer umatlas 411463908 Nov 20 20:57 EVNT.47493127._000322.pool.root.1
[2025-11-22 06:48:14] -rw-r--r--. 3 boincer umatlas 411463908 Nov 20 20:57 ATLAS.root_0
[2025-11-22 06:48:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 20:57 shared
[2025-11-22 06:48:14] -rw-r--r--. 2 boincer umatlas    590104 Nov 20 20:57 input.tar.gz
[2025-11-22 06:48:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 20:57 start_atlas.sh
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas         0 Nov 20 20:57 boinc_lockfile
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas      2786 Nov 21 00:00 pandaJob.out
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas        57 Nov 21 00:00 setup.sh.local
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas    989817 Nov 21 00:00 agis_schedconf.cvmfs.json
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas       533 Nov 22 06:00 boinc_task_state.xml
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas 918040233 Nov 22 06:45 HITS.47523449._003217.pool.root.1
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas      1080 Nov 22 06:46 memory_monitor_summary.json
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas   1526164 Nov 22 06:46 agis_ddmendpoints.agis.ALL.json
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas   2807019 Nov 22 06:46 log.47523449._003217.job.log.tgz.1
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas        95 Nov 22 06:47 pilot_heartbeat.json
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas      8667 Nov 22 06:47 heartbeat.json
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas      6614 Nov 22 06:48 init_data.xml
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas        29 Nov 22 06:48 wrapper_checkpoint.txt
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 06:48 boinc_mmap_file
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas       823 Nov 22 06:48 pilotlog.txt
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas  13507024 Nov 22 06:48 log.47523449._003217.job.log.1
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas       353 Nov 22 06:48 output.list
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas       620 Nov 22 06:48 runtime_log
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas  16332800 Nov 22 06:48 result.tar.gz
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas      9424 Nov 22 06:48 runtime_log.err
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas       793 Nov 22 06:48 gNyLDmSpHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1bHKDmyD1shm.diag
[2025-11-22 06:48:14] -rw-r--r--. 1 boincer umatlas     24153 Nov 22 06:48 stderr.txt
[2025-11-22 06:48:14] HITS file was successfully produced:
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas 918040233 Nov 22 06:45 shared/HITS.pool.root.1
[2025-11-22 06:48:14]  *** Contents of shared directory: ***
[2025-11-22 06:48:14] total 1314900
[2025-11-22 06:48:14] -rw-r--r--. 3 boincer umatlas 411463908 Nov 20 20:57 ATLAS.root_0
[2025-11-22 06:48:14] -rw-r--r--. 2 boincer umatlas    590104 Nov 20 20:57 input.tar.gz
[2025-11-22 06:48:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 20:57 start_atlas.sh
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas 918040233 Nov 22 06:45 HITS.pool.root.1
[2025-11-22 06:48:14] -rw-------. 1 boincer umatlas  16332800 Nov 22 06:48 result.tar.gz
06:48:36 (2420732): run_atlas exited; CPU time 339918.900229
06:48:36 (2420732): called boinc_finish(0)

</stderr_txt>
]]>

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