Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:28:31 (4013636): wrapper (7.7.26015): starting
08:28:31 (4013636): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 08:28:31] Arguments: --nthreads 12
[2025-11-20 08:28:31] Threads: 12
[2025-11-20 08:28:31] Checking for CVMFS
[2025-11-20 08:28:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 08:28:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 08:28:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 08:28:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 08:28:31] 2.11.5.0 3590583 19942 252032 153088 2 559 28472822 45568001 17404 130560 0 203716500 99.834 100779266 29591 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-20 08:28:31] CVMFS is ok
[2025-11-20 08:28:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 08:28:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 08:28:32] Further information can be found at the LHC@home message board.
[2025-11-20 08:28:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 08:28:32] Checking for apptainer binary...
[2025-11-20 08:28:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 08:28:32] Running /usr/bin/apptainer --version
[2025-11-20 08:28:32] apptainer version 1.4.1-1.el9
[2025-11-20 08:28:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 08:28:32] wns0047.triumf.lcg
[2025-11-20 08:28:32] apptainer works
[2025-11-20 08:28:32] Set ATHENA_PROC_NUMBER=12
[2025-11-20 08:28:32] Set ATHENA_CORE_NUMBER=12
[2025-11-20 08:28:32] Starting ATLAS job with PandaID=6893859988
[2025-11-20 08:28:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 08:33:53]  *** The last 200 lines of the pilot log: ***
[2025-11-20 08:33:53] 2025-11-20 16:32:58,014 | INFO     | could have reported an average CPU frequency of 2541 MHz (4 samples)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | ..............................
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . Timing measurements:
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . get job = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . initial setup = 3 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . payload setup = 10 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . stage-in = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . payload execution = 97 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . stage-out = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . log creation = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | ..............................
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893859988/pilotlog.txt
[2025-11-20 08:33:53] 2025-11-20 16:32:58,050 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 08:33:53] - Log from pilotlog.txt -
[2025-11-20 08:33:53] 2025-11-20 16:32:57,999 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893859988/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | INFO     | extracted standard info from prmon json
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 08:33:53] 2025-11-20 16:32:58,014 | WARNING  | wrong length of table data, x=[1763656163.0, 1763656224.0], y=[1172.0, 471754.0] (must be same and length>=4)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,014 | INFO     | could have reported an average CPU frequency of 2541 MHz (4 samples)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | ..............................
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . Timing measurements:
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . get job = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . initial setup = 3 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . payload setup = 10 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . stage-in = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . payload execution = 97 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . stage-out = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . log creation = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | ..............................
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893859988/pilotlog.txt
[2025-11-20 08:33:53] 2025-11-20 16:32:58,050 | WARNING  | 
[2025-11-20 08:33:53] [begin log extracts]
[2025-11-20 08:33:53] - Log from pilotlog.txt -
[2025-11-20 08:33:53] 2025-11-20 16:32:57,999 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893859988/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | INFO     | extracted standard info from prmon json
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 08:33:53] 2025-11-20 16:32:58,000 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 08:33:53] 2025-11-20 16:32:58,014 | WARNING  | wrong length of table data, x=[1763656163.0, 1763656224.0], y=[1172.0, 471754.0] (must be same and length>=4)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,014 | INFO     | could have reported an average CPU frequency of 2541 MHz (4 samples)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | ..............................
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . Timing measurements:
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . get job = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . initial setup = 3 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . payload setup = 10 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . stage-in = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . payload execution = 97 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . stage-out = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | . log creation = 0 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | ..............................
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 08:33:53] 2025-11-20 16:32:58,015 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893859988/pilotlog.txt
[2025-11-20 08:33:53] [end log extracts]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,051 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,052 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 08:33:53] 2025-11-20 16:32:58,177 | INFO     | 
[2025-11-20 08:33:53] 2025-11-20 16:32:58,177 | INFO     | job summary report
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | --------------------------------------------------
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | PanDA job id: 6893859988
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | task id: 47523449
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 08:30:48,229 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | pilot state: failed 
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | transexitcode: 65
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | exeerrorcode: 65
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | exitcode: 65
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | cpuconsumptiontime: 44 s
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | nevents: 0
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | neventsw: 0
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | pid: 4023871
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | pgrp: 4023871
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | corecount: 12
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | event service: False
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | sizes: {0: 2298803, 7: 2299065, 11: 2299093, 108: 2324490, 109: 2328780, 111: 2328836, 233: 2329130}
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | --------------------------------------------------
[2025-11-20 08:33:53] 2025-11-20 16:32:58,178 | INFO     | 
[2025-11-20 08:33:53] 2025-11-20 16:32:58,179 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 08:33:53] 2025-11-20 16:32:58,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | job 6893859988 has completed (purged errors)
[2025-11-20 08:33:53] 2025-11-20 16:32:58,251 | INFO     | overall cleanup function is called
[2025-11-20 08:33:53] 2025-11-20 16:32:59,271 | INFO     | --- collectZombieJob: --- 10, [4023871]
[2025-11-20 08:33:53] 2025-11-20 16:32:59,271 | INFO     | zombie collector waiting for pid 4023871
[2025-11-20 08:33:53] 2025-11-20 16:32:59,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 08:33:53] 2025-11-20 16:32:59,271 | INFO     | collected zombie processes
[2025-11-20 08:33:53] 2025-11-20 16:32:59,271 | INFO     | will attempt to kill all subprocesses of pid=4023871
[2025-11-20 08:33:53] 2025-11-20 16:32:59,471 | INFO     | process IDs to be killed: [4023871] (in reverse order)
[2025-11-20 08:33:53] 2025-11-20 16:32:59,650 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 08:33:53] 2025-11-20 16:32:59,650 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 08:33:53] 2025-11-20 16:32:59,665 | INFO     | did not find any defunct processes belonging to 4023871
[2025-11-20 08:33:53] 2025-11-20 16:32:59,673 | INFO     | did not find any defunct processes belonging to 4023871
[2025-11-20 08:33:53] 2025-11-20 16:32:59,674 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 08:33:53] 2025-11-20 16:32:59,674 | INFO     | ready for new job
[2025-11-20 08:33:53] 2025-11-20 16:32:59,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 08:33:53] 2025-11-20 16:32:59,704 | INFO     | ***************************************
[2025-11-20 08:33:53] 2025-11-20 16:32:59,705 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 08:33:53] 2025-11-20 16:32:59,705 | INFO     | ***************************************
[2025-11-20 08:33:53] 2025-11-20 16:32:59,705 | INFO     | 
[2025-11-20 08:33:53] 2025-11-20 16:32:59,706 | INFO     | architecture information:
[2025-11-20 08:33:53] 2025-11-20 16:32:59,709 | INFO     | executing command: cat /etc/os-release
[2025-11-20 08:33:53] 2025-11-20 16:32:59,829 | INFO     | cat /etc/os-release:
[2025-11-20 08:33:53] NAME="CentOS Linux"
[2025-11-20 08:33:53] VERSION="7 (Core)"
[2025-11-20 08:33:53] ID="centos"
[2025-11-20 08:33:53] ID_LIKE="rhel fedora"
[2025-11-20 08:33:53] VERSION_ID="7"
[2025-11-20 08:33:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 08:33:53] ANSI_COLOR="0;31"
[2025-11-20 08:33:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 08:33:53] HOME_URL="https://www.centos.org/"
[2025-11-20 08:33:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 08:33:53] 
[2025-11-20 08:33:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 08:33:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 08:33:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 08:33:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 08:33:53] 
[2025-11-20 08:33:53] 2025-11-20 16:32:59,829 | INFO     | ***************************************
[2025-11-20 08:33:53] 2025-11-20 16:33:00,333 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 08:33:53] 2025-11-20 16:33:00,404 | INFO     | sufficient remaining disk space (1951044468736 B)
[2025-11-20 08:33:53] 2025-11-20 16:33:00,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 08:33:53] 2025-11-20 16:33:00,404 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 08:33:53] 2025-11-20 16:33:00,404 | INFO     | update_server=False
[2025-11-20 08:33:53] 2025-11-20 16:33:00,404 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 08:33:53] 2025-11-20 16:33:00,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 08:33:53] 2025-11-20 16:33:00,427 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 08:33:53] 2025-11-20 16:33:00,427 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 08:33:53] 2025-11-20 16:33:00,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 08:33:53] 2025-11-20 16:33:00,427 | INFO     | will abort loop
[2025-11-20 08:33:53] 2025-11-20 16:33:00,878 | INFO     | all job control threads have been joined
[2025-11-20 08:33:53] 2025-11-20 16:33:01,177 | INFO     | all data control threads have been joined
[2025-11-20 08:33:53] 2025-11-20 16:33:01,221 | INFO     | all payload control threads have been joined
[2025-11-20 08:33:53] 2025-11-20 16:33:01,410 | INFO     | [job] retrieve thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:01,433 | INFO     | [job] job monitor thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:01,524 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:01,649 | INFO     | [job] validate thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:01,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:01,884 | INFO     | [job] control thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:01,919 | INFO     | [payload] validate_post thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:02,183 | INFO     | [data] control thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:02,214 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:02,227 | INFO     | [payload] control thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:02,309 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:02,423 | INFO     | [data] copytool_out thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:02,445 | INFO     | [payload] failed_post thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:02,759 | INFO     | [data] copytool_in thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:03,192 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 08:33:53] 2025-11-20 16:33:03,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 08:33:53] 2025-11-20 16:33:04,198 | INFO     | [job] queue monitor thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:07,592 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 08:33:53] 2025-11-20 16:33:29,743 | INFO     | PID=4017310 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 08:33:53] 2025-11-20 16:33:29,743 | INFO     | .. there are 28 such processes running
[2025-11-20 08:33:53] 2025-11-20 16:33:29,744 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 08:33:53] 2025-11-20 16:33:29,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 08:33:53] 2025-11-20 16:33:29,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 08:33:53] 2025-11-20 16:33:47,243 | INFO     | [monitor] cgroup control has ended
[2025-11-20 08:33:53] 2025-11-20 16:33:47,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140674795919168)>', '<ExcThread(monitor, started 140674104014592)>']
[2025-11-20 08:33:53] 2025-11-20 16:33:47,856 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 08:33:53] 2025-11-20 16:33:47,856 | INFO     | [monitor] control thread has ended
[2025-11-20 08:33:53] 2025-11-20 16:33:52,479 | INFO     | all workflow threads have been joined
[2025-11-20 08:33:53] 2025-11-20 16:33:52,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 08:33:53] 2025-11-20 16:33:52,479 | INFO     | traces error code: 0
[2025-11-20 08:33:53] 2025-11-20 16:33:52,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 08:33:53] 2025-11-20 16:33:52,602 [wrapper] ==== pilot stdout END ====
[2025-11-20 08:33:53] 2025-11-20 16:33:52,604 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 08:33:53] 2025-11-20 16:33:52,611 [wrapper] pilotpid: 4017310
[2025-11-20 08:33:53] 2025-11-20 16:33:52,613 [wrapper] Pilot exit status: 0
[2025-11-20 08:33:53] 2025-11-20 16:33:52,718 [wrapper] pandaids: 6893859988
[2025-11-20 08:33:53] 2025-11-20 16:33:52,763 [wrapper] cleanup supervisor_pilot 4017316 4017311
[2025-11-20 08:33:53] 2025-11-20 16:33:52,766 [wrapper] Test setup, not cleaning
[2025-11-20 08:33:53] 2025-11-20 16:33:52,768 [wrapper] apfmon messages muted
[2025-11-20 08:33:53] 2025-11-20 16:33:52,770 [wrapper] ==== wrapper stdout END ====
[2025-11-20 08:33:53] 2025-11-20 16:33:52,772 [wrapper] ==== wrapper stderr END ====
[2025-11-20 08:33:53]  *** Error codes and diagnostics ***
[2025-11-20 08:33:53]     "exeErrorCode": 65,
[2025-11-20 08:33:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 08:33:53]     "pilotErrorCode": 1305,
[2025-11-20 08:33:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 08:33:53]  *** Listing of results directory ***
[2025-11-20 08:33:53] total 403896
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc    576529 Nov 20 05:12 pilot3.tar.gz
[2025-11-20 08:33:53] -rwx------. 1 boinc boinc     36292 Nov 20 05:32 runpilot2-wrapper.sh
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc      5112 Nov 20 05:32 queuedata.json
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc       100 Nov 20 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 08:33:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 08:28 run_atlas
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc       105 Nov 20 08:28 job.xml
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc      6595 Nov 20 08:28 init_data.xml
[2025-11-20 08:33:53] -rw-r--r--. 2 boinc boinc 409367504 Nov 20 08:28 EVNT.47493127._000537.pool.root.1
[2025-11-20 08:33:53] -rw-r--r--. 2 boinc boinc     15847 Nov 20 08:28 start_atlas.sh
[2025-11-20 08:33:53] drwxrwx--x. 2 boinc boinc      4096 Nov 20 08:28 shared
[2025-11-20 08:33:53] -rw-r--r--. 2 boinc boinc    590096 Nov 20 08:28 input.tar.gz
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc         0 Nov 20 08:28 boinc_lockfile
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc      2785 Nov 20 08:28 pandaJob.out
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc    989440 Nov 20 08:28 agis_schedconf.cvmfs.json
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc   1526164 Nov 20 08:28 agis_ddmendpoints.agis.ALL.json
[2025-11-20 08:33:53] drwx------. 5 boinc boinc      4096 Nov 20 08:28 pilot3
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc       525 Nov 20 08:30 boinc_task_state.xml
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc       989 Nov 20 08:30 memory_monitor_summary.json
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc     48866 Nov 20 08:30 log.47523449._005363.job.log.tgz.1
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc        95 Nov 20 08:32 pilot_heartbeat.json
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc     10336 Nov 20 08:32 heartbeat.json
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc      8192 Nov 20 08:33 boinc_mmap_file
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc        23 Nov 20 08:33 wrapper_checkpoint.txt
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc      5009 Nov 20 08:33 pilotlog.txt
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc     98361 Nov 20 08:33 log.47523449._005363.job.log.1
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc       186 Nov 20 08:33 output.list
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc       620 Nov 20 08:33 runtime_log
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc    174080 Nov 20 08:33 result.tar.gz
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc      8636 Nov 20 08:33 runtime_log.err
[2025-11-20 08:33:53] -rw-------. 1 boinc boinc       644 Nov 20 08:33 HBGKDmLxJg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5iGKDmL8rf7m.diag
[2025-11-20 08:33:53] -rw-r--r--. 1 boinc boinc     21716 Nov 20 08:33 stderr.txt
[2025-11-20 08:33:54] No HITS result produced
[2025-11-20 08:33:54]  *** Contents of shared directory: ***
[2025-11-20 08:33:54] total 400548
[2025-11-20 08:33:54] -rw-r--r--. 2 boinc boinc 409367504 Nov 20 08:28 ATLAS.root_0
[2025-11-20 08:33:54] -rw-r--r--. 2 boinc boinc     15847 Nov 20 08:28 start_atlas.sh
[2025-11-20 08:33:54] -rw-r--r--. 2 boinc boinc    590096 Nov 20 08:28 input.tar.gz
[2025-11-20 08:33:54] -rw-------. 1 boinc boinc    174080 Nov 20 08:33 result.tar.gz
08:33:55 (4013636): run_atlas exited; CPU time 44.827839
08:33:55 (4013636): called boinc_finish(0)

</stderr_txt>
]]>

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