Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:20:39 (3894428): wrapper (7.7.26015): starting
12:20:39 (3894428): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 12:20:39] Arguments: --nthreads 8
[2025-11-20 12:20:39] Threads: 8
[2025-11-20 12:20:39] Checking for CVMFS
[2025-11-20 12:20:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 12:20:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 12:20:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 12:20:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 12:20:39] 2.13.2.0 6956 25418 420980 153090 2 240 30857845 40960001 14302 16776704 0 97275683 99.653 76086003 37190 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 12:20:39] CVMFS is ok
[2025-11-20 12:20:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 12:20:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 12:20:39] Further information can be found at the LHC@home message board.
[2025-11-20 12:20:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 12:20:39] Checking for apptainer binary...
[2025-11-20 12:20:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 12:20:39] Running /usr/bin/apptainer --version
[2025-11-20 12:20:39] apptainer version 1.4.4-1.el9
[2025-11-20 12:20:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 12:20:39] c-206-34.aglt2.org
[2025-11-20 12:20:39] apptainer works
[2025-11-20 12:20:39] Set ATHENA_PROC_NUMBER=8
[2025-11-20 12:20:39] Set ATHENA_CORE_NUMBER=8
[2025-11-20 12:20:40] Starting ATLAS job with PandaID=6893835368
[2025-11-20 12:20:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:40:06 (3894428): BOINC client no longer exists - exiting
18:40:06 (3894428): timer handler: client dead, exiting
18:40:25 (467709): wrapper (7.7.26015): starting
18:40:25 (467709): wrapper: running run_atlas (--nthreads 9)
[2025-11-20 18:40:25] Arguments: --nthreads 9
[2025-11-20 18:40:25] Threads: 9
[2025-11-20 18:40:25] This job has been restarted, cleaning up previous attempt
[2025-11-20 18:40:25] Checking for CVMFS
[2025-11-20 18:40:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 18:40:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 18:40:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 18:40:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 18:40:26] 2.13.2.0 6956 25798 418936 153101 0 142 35413463 40960001 10664 16776704 0 98480683 99.649 77131343 36805 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 18:40:26] CVMFS is ok
[2025-11-20 18:40:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 18:40:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 18:40:26] Further information can be found at the LHC@home message board.
[2025-11-20 18:40:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 18:40:26] Checking for apptainer binary...
[2025-11-20 18:40:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 18:40:26] Running /usr/bin/apptainer --version
[2025-11-20 18:40:26] apptainer version 1.4.4-1.el9
[2025-11-20 18:40:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 18:40:26] c-206-34.aglt2.org
[2025-11-20 18:40:26] apptainer works
[2025-11-20 18:40:26] Set ATHENA_PROC_NUMBER=9
[2025-11-20 18:40:26] Set ATHENA_CORE_NUMBER=9
[2025-11-20 18:40:26] Starting ATLAS job with PandaID=6893835368
[2025-11-20 18:40:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 03:15:12]  *** The last 200 lines of the pilot log: ***
[2025-11-21 03:15:12] 2025-11-21 08:14:23,233 | INFO     | time since job start (30824s) is within the limit (172800.0s)
[2025-11-21 03:15:12] 2025-11-21 08:14:23,774 | INFO     | monitor loop #2012: job 0:6893835368 is in state 'finished'
[2025-11-21 03:15:12] 2025-11-21 08:14:23,775 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,299 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 03:15:12] 2025-11-21 08:14:24,307 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.4287656250003
[2025-11-21 03:15:12] 2025-11-21 08:14:24,317 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893835368/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,317 | INFO     | extracted standard info from prmon json
[2025-11-21 03:15:12] 2025-11-21 08:14:24,317 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 03:15:12] 2025-11-21 08:14:24,317 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 03:15:12] 2025-11-21 08:14:24,327 | INFO     | fitting pss+swap vs Time
[2025-11-21 03:15:12] 2025-11-21 08:14:24,327 | INFO     | sum of square deviations: 39936938159.48496
[2025-11-21 03:15:12] 2025-11-21 08:14:24,333 | INFO     | sum of deviations: 426829540800.0005
[2025-11-21 03:15:12] 2025-11-21 08:14:24,333 | INFO     | mean x: 1763697445.7623763
[2025-11-21 03:15:12] 2025-11-21 08:14:24,334 | INFO     | mean y: 3028544.6
[2025-11-21 03:15:12] 2025-11-21 08:14:24,334 | INFO     | intersect: -18846643102.201008
[2025-11-21 03:15:12] 2025-11-21 08:14:24,334 | INFO     | chi2: 5.406605911812717
[2025-11-21 03:15:12] 2025-11-21 08:14:24,335 | INFO     | sum of square deviations: 38762731758.79994
[2025-11-21 03:15:12] 2025-11-21 08:14:24,341 | INFO     | sum of deviations: 596547882464.1602
[2025-11-21 03:15:12] 2025-11-21 08:14:24,341 | INFO     | mean x: 1763697293.28
[2025-11-21 03:15:12] 2025-11-21 08:14:24,341 | INFO     | mean y: 3050575.906
[2025-11-21 03:15:12] 2025-11-21 08:14:24,341 | INFO     | intersect: -27139770321.25896
[2025-11-21 03:15:12] 2025-11-21 08:14:24,341 | INFO     | chi2: 2.427221010674163
[2025-11-21 03:15:12] 2025-11-21 08:14:24,342 | INFO     | current chi2=2.427221010674163 (change=55.10638189162248 %)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,342 | INFO     | sum of square deviations: 37611629726.72735
[2025-11-21 03:15:12] 2025-11-21 08:14:24,348 | INFO     | sum of deviations: 631276996943.4547
[2025-11-21 03:15:12] 2025-11-21 08:14:24,348 | INFO     | mean x: 1763697140.7878788
[2025-11-21 03:15:12] 2025-11-21 08:14:24,348 | INFO     | mean y: 3055154.909090909
[2025-11-21 03:15:12] 2025-11-21 08:14:24,348 | INFO     | intersect: -29598997259.297924
[2025-11-21 03:15:12] 2025-11-21 08:14:24,349 | INFO     | chi2: 2.132879445260628
[2025-11-21 03:15:12] 2025-11-21 08:14:24,349 | INFO     | current chi2=2.132879445260628 (change=12.126689910770903 %)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,349 | INFO     | right removable region: 494
[2025-11-21 03:15:12] 2025-11-21 08:14:24,349 | INFO     | sum of square deviations: 38762250107.9122
[2025-11-21 03:15:12] 2025-11-21 08:14:24,355 | INFO     | sum of deviations: 295956309211.13196
[2025-11-21 03:15:12] 2025-11-21 08:14:24,355 | INFO     | mean x: 1763697598.276
[2025-11-21 03:15:12] 2025-11-21 08:14:24,355 | INFO     | mean y: 3045484.086
[2025-11-21 03:15:12] 2025-11-21 08:14:24,355 | INFO     | intersect: -13463082779.808462
[2025-11-21 03:15:12] 2025-11-21 08:14:24,356 | INFO     | chi2: 3.434607458785049
[2025-11-21 03:15:12] 2025-11-21 08:14:24,356 | INFO     | current chi2=3.434607458785049 (change=36.47387076463466 %)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,356 | INFO     | sum of square deviations: 37610910179.87083
[2025-11-21 03:15:12] 2025-11-21 08:14:24,361 | INFO     | sum of deviations: 259664793176.9576
[2025-11-21 03:15:12] 2025-11-21 08:14:24,362 | INFO     | mean x: 1763697750.7838383
[2025-11-21 03:15:12] 2025-11-21 08:14:24,362 | INFO     | mean y: 3050287.56969697
[2025-11-21 03:15:12] 2025-11-21 08:14:24,362 | INFO     | intersect: -12173475340.06731
[2025-11-21 03:15:12] 2025-11-21 08:14:24,362 | INFO     | chi2: 3.3693585704078926
[2025-11-21 03:15:12] 2025-11-21 08:14:24,362 | INFO     | current chi2=3.3693585704078926 (change=1.8997480544759915 %)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,362 | INFO     | left removable region: 20
[2025-11-21 03:15:12] 2025-11-21 08:14:24,363 | INFO     | sum of square deviations: 33024665011.257378
[2025-11-21 03:15:12] 2025-11-21 08:14:24,368 | INFO     | sum of deviations: 413833159313.7089
[2025-11-21 03:15:12] 2025-11-21 08:14:24,368 | INFO     | mean x: 1763697720.3206751
[2025-11-21 03:15:12] 2025-11-21 08:14:24,368 | INFO     | mean y: 3084406.2848101268
[2025-11-21 03:15:12] 2025-11-21 08:14:24,368 | INFO     | intersect: -22097869514.84936
[2025-11-21 03:15:12] 2025-11-21 08:14:24,368 | INFO     | chi2: 0.04646064898438656
[2025-11-21 03:15:12] 2025-11-21 08:14:24,369 | INFO     | current memory leak: 12.53 B/s (using 474 data points, chi2=0.05)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,369 | INFO     | could have reported an average CPU frequency of 3276 MHz (20 samples)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,369 | INFO     | ..............................
[2025-11-21 03:15:12] 2025-11-21 08:14:24,369 | INFO     | . Timing measurements:
[2025-11-21 03:15:12] 2025-11-21 08:14:24,369 | INFO     | . get job = 0 s
[2025-11-21 03:15:12] 2025-11-21 08:14:24,370 | INFO     | . initial setup = 2 s
[2025-11-21 03:15:12] 2025-11-21 08:14:24,370 | INFO     | . payload setup = 7 s
[2025-11-21 03:15:12] 2025-11-21 08:14:24,370 | INFO     | . stage-in = 0 s
[2025-11-21 03:15:12] 2025-11-21 08:14:24,370 | INFO     | . payload execution = 30781 s
[2025-11-21 03:15:12] 2025-11-21 08:14:24,370 | INFO     | . stage-out = 4 s
[2025-11-21 03:15:12] 2025-11-21 08:14:24,370 | INFO     | . log creation = 0 s
[2025-11-21 03:15:12] 2025-11-21 08:14:24,370 | INFO     | ..............................
[2025-11-21 03:15:12] 2025-11-21 08:14:24,463 | INFO     | 
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | job summary report
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | --------------------------------------------------
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | PanDA job id: 6893835368
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | task id: 47523449
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | errors: (none)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | pilot state: finished 
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | transexitcode: 0
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | exeerrorcode: 0
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | exeerrordiag: 
[2025-11-21 03:15:12] 2025-11-21 08:14:24,464 | INFO     | exitcode: 0
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | exitmsg: OK
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | cpuconsumptiontime: 198695 s
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | nevents: 1000
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | neventsw: 0
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | pid: 508421
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | pgrp: 508421
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | corecount: 9
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | event service: False
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | sizes: {0: 2298803, 6: 2299065, 11: 2299093, 30792: 2338749, 30797: 2347743, 30798: 2347799, 30807: 2348173}
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | --------------------------------------------------
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | 
[2025-11-21 03:15:12] 2025-11-21 08:14:24,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 03:15:12] 2025-11-21 08:14:24,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,503 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,503 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 03:15:12] 2025-11-21 08:14:24,505 | INFO     | job 6893835368 has completed (purged errors)
[2025-11-21 03:15:12] 2025-11-21 08:14:24,505 | INFO     | overall cleanup function is called
[2025-11-21 03:15:12] 2025-11-21 08:14:25,553 | INFO     | --- collectZombieJob: --- 10, [508421]
[2025-11-21 03:15:12] 2025-11-21 08:14:25,555 | INFO     | zombie collector waiting for pid 508421
[2025-11-21 03:15:12] 2025-11-21 08:14:25,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 03:15:12] 2025-11-21 08:14:25,556 | INFO     | collected zombie processes
[2025-11-21 03:15:12] 2025-11-21 08:14:25,556 | INFO     | will attempt to kill all subprocesses of pid=508421
[2025-11-21 03:15:12] 2025-11-21 08:14:26,169 | INFO     | process IDs to be killed: [508421] (in reverse order)
[2025-11-21 03:15:12] 2025-11-21 08:14:26,312 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 03:15:12] 2025-11-21 08:14:26,313 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 03:15:12] 2025-11-21 08:14:26,343 | INFO     | did not find any defunct processes belonging to 508421
[2025-11-21 03:15:12] 2025-11-21 08:14:26,371 | INFO     | did not find any defunct processes belonging to 508421
[2025-11-21 03:15:12] 2025-11-21 08:14:26,388 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 03:15:12] 2025-11-21 08:14:26,388 | INFO     | ready for new job
[2025-11-21 03:15:12] 2025-11-21 08:14:26,388 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 03:15:12] 2025-11-21 08:14:26,391 | INFO     | ***************************************
[2025-11-21 03:15:12] 2025-11-21 08:14:26,391 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 03:15:12] 2025-11-21 08:14:26,391 | INFO     | ***************************************
[2025-11-21 03:15:12] 2025-11-21 08:14:26,391 | INFO     | 
[2025-11-21 03:15:12] 2025-11-21 08:14:26,399 | INFO     | architecture information:
[2025-11-21 03:15:12] 2025-11-21 08:14:26,410 | INFO     | executing command: cat /etc/os-release
[2025-11-21 03:15:12] 2025-11-21 08:14:26,452 | INFO     | cat /etc/os-release:
[2025-11-21 03:15:12] NAME="CentOS Linux"
[2025-11-21 03:15:12] VERSION="7 (Core)"
[2025-11-21 03:15:12] ID="centos"
[2025-11-21 03:15:12] ID_LIKE="rhel fedora"
[2025-11-21 03:15:12] VERSION_ID="7"
[2025-11-21 03:15:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 03:15:12] ANSI_COLOR="0;31"
[2025-11-21 03:15:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 03:15:12] HOME_URL="https://www.centos.org/"
[2025-11-21 03:15:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 03:15:12] 
[2025-11-21 03:15:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 03:15:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 03:15:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 03:15:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 03:15:12] 
[2025-11-21 03:15:12] 2025-11-21 08:14:26,452 | INFO     | ***************************************
[2025-11-21 03:15:12] 2025-11-21 08:14:26,956 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 03:15:12] 2025-11-21 08:14:26,990 | INFO     | sufficient remaining disk space (76527173632 B)
[2025-11-21 03:15:12] 2025-11-21 08:14:26,991 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 03:15:12] 2025-11-21 08:14:26,991 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 03:15:12] 2025-11-21 08:14:26,991 | INFO     | update_server=False
[2025-11-21 03:15:12] 2025-11-21 08:14:26,991 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 03:15:12] 2025-11-21 08:14:27,019 | INFO     | all data control threads have been joined
[2025-11-21 03:15:12] 2025-11-21 08:14:27,105 | INFO     | all payload control threads have been joined
[2025-11-21 03:15:12] 2025-11-21 08:14:27,295 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:15:12] 2025-11-21 08:14:27,296 | INFO     | aborting loop
[2025-11-21 03:15:12] 2025-11-21 08:14:27,369 | INFO     | all job control threads have been joined
[2025-11-21 03:15:12] 2025-11-21 08:14:27,566 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 03:15:12] 2025-11-21 08:14:27,997 | INFO     | [job] retrieve thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,027 | INFO     | [data] control thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,111 | INFO     | [payload] control thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,193 | INFO     | [data] copytool_in thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,302 | INFO     | [job] job monitor thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,375 | INFO     | [job] control thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,543 | INFO     | [payload] failed_post thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,887 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,976 | INFO     | [job] validate thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:28,976 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:29,010 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:29,385 | INFO     | [payload] validate_post thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:29,449 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:29,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 03:15:12] 2025-11-21 08:14:29,575 | INFO     | [data] copytool_out thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:30,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 03:15:12] 2025-11-21 08:14:30,480 | INFO     | [job] queue monitor thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:32,454 | INFO     | [monitor] cgroup control has ended
[2025-11-21 03:15:12] 2025-11-21 08:14:34,129 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 03:15:12] 2025-11-21 08:14:34,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374253201216)>', '<ExcThread(monitor, started 140373489874688)>']
[2025-11-21 03:15:12] 2025-11-21 08:14:39,821 | INFO     | all workflow threads have been joined
[2025-11-21 03:15:12] 2025-11-21 08:14:39,822 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 03:15:12] 2025-11-21 08:14:39,822 | INFO     | traces error code: 0
[2025-11-21 03:15:12] 2025-11-21 08:14:39,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 03:15:12] 2025-11-21 08:14:56,685 | INFO     | PID=482370 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 03:15:12] 2025-11-21 08:14:56,685 | INFO     | .. there are 18 such processes running
[2025-11-21 03:15:12] 2025-11-21 08:14:56,686 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 03:15:12] 2025-11-21 08:14:56,686 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 03:15:12] 2025-11-21 08:14:56,686 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 03:15:12] 2025-11-21 08:14:56,686 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 03:15:12] 2025-11-21 08:14:56,686 | INFO     | [monitor] control thread has ended
[2025-11-21 03:15:12] 2025-11-21 08:14:56,819 [wrapper] ==== pilot stdout END ====
[2025-11-21 03:15:12] 2025-11-21 08:14:56,823 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 03:15:12] 2025-11-21 08:14:56,829 [wrapper] pilotpid: 482370
[2025-11-21 03:15:12] 2025-11-21 08:14:56,832 [wrapper] Pilot exit status: 0
[2025-11-21 03:15:12] 2025-11-21 08:14:56,849 [wrapper] pandaids: 6893835368 6893835368
[2025-11-21 03:15:12] 2025-11-21 08:14:56,945 [wrapper] cleanup supervisor_pilot 1913584 482371
[2025-11-21 03:15:12] 2025-11-21 08:14:56,953 [wrapper] Test setup, not cleaning
[2025-11-21 03:15:12] 2025-11-21 08:14:56,956 [wrapper] apfmon messages muted
[2025-11-21 03:15:12] 2025-11-21 08:14:56,961 [wrapper] ==== wrapper stdout END ====
[2025-11-21 03:15:12] 2025-11-21 08:14:56,966 [wrapper] ==== wrapper stderr END ====
[2025-11-21 03:15:12]  *** Error codes and diagnostics ***
[2025-11-21 03:15:12]     "exeErrorCode": 0,
[2025-11-21 03:15:12]     "exeErrorDiag": "",
[2025-11-21 03:15:12]     "pilotErrorCode": 0,
[2025-11-21 03:15:12]     "pilotErrorDiag": "",
[2025-11-21 03:15:12]  *** Listing of results directory ***
[2025-11-21 03:15:12] total 1705612
[2025-11-21 03:15:12] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 03:15:12] -rwx------. 1 boincer umatlas     36292 Nov 20 05:14 runpilot2-wrapper.sh
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:16 queuedata.json
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas       100 Nov 20 12:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 03:15:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 12:20 run_atlas
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas       105 Nov 20 12:20 job.xml
[2025-11-21 03:15:12] -rw-r--r--. 3 boincer umatlas 409278105 Nov 20 12:20 EVNT.47493127._000087.pool.root.1
[2025-11-21 03:15:12] -rw-r--r--. 3 boincer umatlas 409278105 Nov 20 12:20 ATLAS.root_0
[2025-11-21 03:15:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 12:20 start_atlas.sh
[2025-11-21 03:15:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 12:20 shared
[2025-11-21 03:15:12] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 12:20 input.tar.gz
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas         0 Nov 20 12:20 boinc_lockfile
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas      2784 Nov 20 18:40 pandaJob.out
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas        57 Nov 20 18:40 setup.sh.local
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas    989817 Nov 20 18:40 agis_schedconf.cvmfs.json
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas       533 Nov 21 03:04 boinc_task_state.xml
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas      6902 Nov 21 03:12 init_data.xml
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas 912018313 Nov 21 03:13 HITS.47523449._000862.pool.root.1
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas      1054 Nov 21 03:14 memory_monitor_summary.json
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas   1526164 Nov 21 03:14 agis_ddmendpoints.agis.ALL.json
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas   1890788 Nov 21 03:14 log.47523449._000862.job.log.tgz.1
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas      8596 Nov 21 03:14 heartbeat.json
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas        29 Nov 21 03:14 wrapper_checkpoint.txt
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas        95 Nov 21 03:14 pilot_heartbeat.json
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas       822 Nov 21 03:14 pilotlog.txt
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas   4132731 Nov 21 03:14 log.47523449._000862.job.log.1
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas       353 Nov 21 03:14 output.list
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas       620 Nov 21 03:14 runtime_log
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas   6041600 Nov 21 03:14 result.tar.gz
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas      9428 Nov 21 03:14 runtime_log.err
[2025-11-21 03:15:12] -rw-------. 1 boincer umatlas       789 Nov 21 03:14 OsUNDmcrGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWFHKDmnyefxm.diag
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 03:15 boinc_mmap_file
[2025-11-21 03:15:12] -rw-r--r--. 1 boincer umatlas     23562 Nov 21 03:15 stderr.txt
[2025-11-21 03:15:13] HITS file was successfully produced:
[2025-11-21 03:15:13] -rw-------. 1 boincer umatlas 912018313 Nov 21 03:13 shared/HITS.pool.root.1
[2025-11-21 03:15:13]  *** Contents of shared directory: ***
[2025-11-21 03:15:13] total 1296836
[2025-11-21 03:15:13] -rw-r--r--. 3 boincer umatlas 409278105 Nov 20 12:20 ATLAS.root_0
[2025-11-21 03:15:13] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 12:20 start_atlas.sh
[2025-11-21 03:15:13] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 12:20 input.tar.gz
[2025-11-21 03:15:13] -rw-------. 1 boincer umatlas 912018313 Nov 21 03:13 HITS.pool.root.1
[2025-11-21 03:15:13] -rw-------. 1 boincer umatlas   6041600 Nov 21 03:14 result.tar.gz
03:15:14 (467709): run_atlas exited; CPU time 198660.515013
03:15:14 (467709): called boinc_finish(0)

</stderr_txt>
]]>

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