Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:23:36 (1017152): wrapper (7.7.26015): starting
17:23:36 (1017152): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 17:23:36] Arguments: --nthreads 3
[2025-11-20 17:23:36] Threads: 3
[2025-11-20 17:23:36] Checking for CVMFS
[2025-11-20 17:23:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:23:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:23:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:23:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:23:36] 2.9.2.0 16720 210 64976 153088 1 88 34405589 36864000 0 130560 0 3006749 99.999 9571 10681 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 17:23:36] CVMFS is ok
[2025-11-20 17:23:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:23:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:23:36] Further information can be found at the LHC@home message board.
[2025-11-20 17:23:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:23:36] Checking for apptainer binary...
[2025-11-20 17:23:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:23:36] Running /usr/bin/apptainer --version
[2025-11-20 17:23:36] apptainer version 1.4.1-1.1
[2025-11-20 17:23:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:23:36] thA335
[2025-11-20 17:23:36] apptainer works
[2025-11-20 17:23:36] Set ATHENA_PROC_NUMBER=3
[2025-11-20 17:23:36] Set ATHENA_CORE_NUMBER=3
[2025-11-20 17:23:36] Starting ATLAS job with PandaID=6893849737
[2025-11-20 17:23:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:27:54]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:27:54] 2025-11-20 16:27:02,861 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 17:27:54] 2025-11-20 16:27:02,874 | INFO     | sufficient remaining disk space (827643133952 B)
[2025-11-20 17:27:54] 2025-11-20 16:27:02,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:27:54] 2025-11-20 16:27:02,874 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:27:54] 2025-11-20 16:27:02,874 | INFO     | update_server=False
[2025-11-20 17:27:54] 2025-11-20 16:27:02,874 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:27:54] 2025-11-20 16:27:02,874 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:27:54] 2025-11-20 16:27:02,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:27:54] 2025-11-20 16:27:02,875 | INFO     | aborting loop
[2025-11-20 17:27:54] 2025-11-20 16:27:03,026 | INFO     | all job control threads have been joined
[2025-11-20 17:27:54] 2025-11-20 16:27:03,878 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:03,880 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:03,880 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:03,892 | INFO     | all data control threads have been joined
[2025-11-20 17:27:54] 2025-11-20 16:27:03,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:27:54] 2025-11-20 16:27:04,032 | INFO     | [job] control thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:04,200 | INFO     | all payload control threads have been joined
[2025-11-20 17:27:54] 2025-11-20 16:27:04,216 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:04,827 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:04,897 | INFO     | [data] control thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:05,004 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:05,127 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:05,176 | INFO     | [job] validate thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:05,206 | INFO     | [payload] control thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:05,268 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:05,326 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:05,346 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:05,896 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:27:54] 2025-11-20 16:27:05,924 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:09,903 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:27:54] 2025-11-20 16:27:33,528 | INFO     | PID=1020878 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 17:27:54] 2025-11-20 16:27:33,528 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:27:54] 2025-11-20 16:27:33,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:27:54] 2025-11-20 16:27:33,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:27:54] 2025-11-20 16:27:48,547 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:27:54] 2025-11-20 16:27:49,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139907627009856)>', '<ExcThread(monitor, started 139907133593344)>']
[2025-11-20 17:27:54] 2025-11-20 16:27:50,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:27:54] 2025-11-20 16:27:50,620 | INFO     | [monitor] control thread has ended
[2025-11-20 17:27:54] 2025-11-20 16:27:54,673 | INFO     | all workflow threads have been joined
[2025-11-20 17:27:54] 2025-11-20 16:27:54,673 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:27:54] 2025-11-20 16:27:54,674 | INFO     | traces error code: 0
[2025-11-20 17:27:54] 2025-11-20 16:27:54,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:27:54] 2025-11-20 16:27:54,720 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:27:54] 2025-11-20 16:27:54,723 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:27:54] 2025-11-20 16:27:54,726 [wrapper] pilotpid: 1020878
[2025-11-20 17:27:54] 2025-11-20 16:27:54,728 [wrapper] Pilot exit status: 0
[2025-11-20 17:27:54] 2025-11-20 16:27:54,735 [wrapper] pandaids: 6893849737
[2025-11-20 17:27:54] 2025-11-20 16:27:54,752 [wrapper] cleanup supervisor_pilot 1020884 1020879
[2025-11-20 17:27:54] 2025-11-20 16:27:54,754 [wrapper] Test setup, not cleaning
[2025-11-20 17:27:54] 2025-11-20 16:27:54,757 [wrapper] apfmon messages muted
[2025-11-20 17:27:54] 2025-11-20 16:27:54,759 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:27:54] 2025-11-20 16:27:54,762 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:27:54]  *** Error codes and diagnostics ***
[2025-11-20 17:27:54]     "exeErrorCode": 65,
[2025-11-20 17:27:54]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 17:27:54]     "pilotErrorCode": 1305,
[2025-11-20 17:27:54]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 17:27:54]  *** Listing of results directory ***
[2025-11-20 17:27:54] total 406824
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:00 pilot3.tar.gz
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:02 queuedata.json
[2025-11-20 17:27:54] -rwx------ 1 boinc boinc     36292 Nov 20 12:03 runpilot2-wrapper.sh
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc       100 Nov 20 17:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:27:54] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 17:23 run_atlas
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc       105 Nov 20 17:23 job.xml
[2025-11-20 17:27:54] -rw-r--r-- 2 boinc boinc 412391726 Nov 20 17:23 EVNT.47493127._000303.pool.root.1
[2025-11-20 17:27:54] -rw-r--r-- 2 boinc boinc    590099 Nov 20 17:23 input.tar.gz
[2025-11-20 17:27:54] -rw-r--r-- 2 boinc boinc     15847 Nov 20 17:23 start_atlas.sh
[2025-11-20 17:27:54] drwxrwx--x 2 boinc boinc      4096 Nov 20 17:23 shared
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc         0 Nov 20 17:23 boinc_setup_complete
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc      6194 Nov 20 17:23 init_data.xml
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc         0 Nov 20 17:23 boinc_lockfile
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc      2786 Nov 20 17:23 pandaJob.out
[2025-11-20 17:27:54] -rw------- 1 boinc boinc    989440 Nov 20 17:23 agis_schedconf.cvmfs.json
[2025-11-20 17:27:54] -rw------- 1 boinc boinc   1526164 Nov 20 17:23 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:27:54] drwx------ 5 boinc boinc      4096 Nov 20 17:23 pilot3
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc       522 Nov 20 17:24 boinc_task_state.xml
[2025-11-20 17:27:54] -rw------- 1 boinc boinc       946 Nov 20 17:24 memory_monitor_summary.json
[2025-11-20 17:27:54] -rw------- 1 boinc boinc     55604 Nov 20 17:24 log.47523449._003030.job.log.tgz.1
[2025-11-20 17:27:54] -rw------- 1 boinc boinc        95 Nov 20 17:26 pilot_heartbeat.json
[2025-11-20 17:27:54] -rw------- 1 boinc boinc      8401 Nov 20 17:27 heartbeat.json
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc      8192 Nov 20 17:27 boinc_mmap_file
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc        22 Nov 20 17:27 wrapper_checkpoint.txt
[2025-11-20 17:27:54] -rw------- 1 boinc boinc      4752 Nov 20 17:27 pilotlog.txt
[2025-11-20 17:27:54] -rw------- 1 boinc boinc     93549 Nov 20 17:27 log.47523449._003030.job.log.1
[2025-11-20 17:27:54] -rw------- 1 boinc boinc       186 Nov 20 17:27 output.list
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc       620 Nov 20 17:27 runtime_log
[2025-11-20 17:27:54] -rw------- 1 boinc boinc    163840 Nov 20 17:27 result.tar.gz
[2025-11-20 17:27:54] -rw------- 1 boinc boinc       649 Nov 20 17:27 yAqLDmmcHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1UGKDm28xwVn.diag
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc      8744 Nov 20 17:27 runtime_log.err
[2025-11-20 17:27:54] -rw-r--r-- 1 boinc boinc      8235 Nov 20 17:27 stderr.txt
[2025-11-20 17:27:54] No HITS result produced
[2025-11-20 17:27:54]  *** Contents of shared directory: ***
[2025-11-20 17:27:54] total 403488
[2025-11-20 17:27:54] -rw-r--r-- 2 boinc boinc 412391726 Nov 20 17:23 ATLAS.root_0
[2025-11-20 17:27:54] -rw-r--r-- 2 boinc boinc    590099 Nov 20 17:23 input.tar.gz
[2025-11-20 17:27:54] -rw-r--r-- 2 boinc boinc     15847 Nov 20 17:23 start_atlas.sh
[2025-11-20 17:27:54] -rw------- 1 boinc boinc    163840 Nov 20 17:27 result.tar.gz
17:27:56 (1017152): run_atlas exited; CPU time 31.694283
17:27:56 (1017152): called boinc_finish(0)

</stderr_txt>
]]>

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