Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:03:11 (1204755): wrapper (7.7.26015): starting
18:03:11 (1204755): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 18:03:11] Arguments: --nthreads 3
[2025-11-20 18:03:11] Threads: 3
[2025-11-20 18:03:11] Checking for CVMFS
[2025-11-20 18:03:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 18:03:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 18:03:11] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 18:03:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 18:03:11] 2.9.2.0 16720 250 66056 153088 2 88 34405804 36864000 0 130560 0 3570570 99.999 9577 9683 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 18:03:11] CVMFS is ok
[2025-11-20 18:03:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 18:03:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 18:03:11] Further information can be found at the LHC@home message board.
[2025-11-20 18:03:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 18:03:11] Checking for apptainer binary...
[2025-11-20 18:03:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 18:03:11] Running /usr/bin/apptainer --version
[2025-11-20 18:03:11] apptainer version 1.4.1-1.1
[2025-11-20 18:03:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 18:03:11] thA335
[2025-11-20 18:03:11] apptainer works
[2025-11-20 18:03:11] Set ATHENA_PROC_NUMBER=3
[2025-11-20 18:03:11] Set ATHENA_CORE_NUMBER=3
[2025-11-20 18:03:11] Starting ATLAS job with PandaID=6893847789
[2025-11-20 18:03:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 18:07:28]  *** The last 200 lines of the pilot log: ***
[2025-11-20 18:07:28] 2025-11-20 17:06:30,525 | INFO     | ***************************************
[2025-11-20 18:07:28] 2025-11-20 17:06:30,525 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 18:07:28] 2025-11-20 17:06:30,525 | INFO     | ***************************************
[2025-11-20 18:07:28] 2025-11-20 17:06:30,525 | INFO     | 
[2025-11-20 18:07:28] 2025-11-20 17:06:30,526 | INFO     | architecture information:
[2025-11-20 18:07:28] 2025-11-20 17:06:30,526 | INFO     | executing command: cat /etc/os-release
[2025-11-20 18:07:28] 2025-11-20 17:06:30,535 | INFO     | cat /etc/os-release:
[2025-11-20 18:07:28] NAME="CentOS Linux"
[2025-11-20 18:07:28] VERSION="7 (Core)"
[2025-11-20 18:07:28] ID="centos"
[2025-11-20 18:07:28] ID_LIKE="rhel fedora"
[2025-11-20 18:07:28] VERSION_ID="7"
[2025-11-20 18:07:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 18:07:28] ANSI_COLOR="0;31"
[2025-11-20 18:07:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 18:07:28] HOME_URL="https://www.centos.org/"
[2025-11-20 18:07:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 18:07:28] 
[2025-11-20 18:07:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 18:07:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 18:07:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 18:07:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 18:07:28] 
[2025-11-20 18:07:28] 2025-11-20 17:06:30,536 | INFO     | ***************************************
[2025-11-20 18:07:28] 2025-11-20 17:06:31,039 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 18:07:28] 2025-11-20 17:06:31,052 | INFO     | sufficient remaining disk space (827644182528 B)
[2025-11-20 18:07:28] 2025-11-20 17:06:31,053 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 18:07:28] 2025-11-20 17:06:31,053 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 18:07:28] 2025-11-20 17:06:31,053 | INFO     | update_server=False
[2025-11-20 18:07:28] 2025-11-20 17:06:31,053 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 18:07:28] 2025-11-20 17:06:31,053 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 18:07:28] 2025-11-20 17:06:31,053 | INFO     | aborting loop
[2025-11-20 18:07:28] 2025-11-20 17:06:31,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 18:07:28] 2025-11-20 17:06:31,053 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 18:07:28] 2025-11-20 17:06:31,591 | INFO     | all job control threads have been joined
[2025-11-20 18:07:28] 2025-11-20 17:06:31,890 | INFO     | all payload control threads have been joined
[2025-11-20 18:07:28] 2025-11-20 17:06:32,058 | INFO     | all data control threads have been joined
[2025-11-20 18:07:28] 2025-11-20 17:06:32,059 | INFO     | [job] job monitor thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,060 | INFO     | [job] retrieve thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,061 | INFO     | [job] queue monitor thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,098 | INFO     | [payload] validate_post thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,224 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,354 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 18:07:28] 2025-11-20 17:06:32,597 | INFO     | [job] control thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,645 | INFO     | [payload] failed_post thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,878 | INFO     | [job] validate thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,892 | INFO     | [payload] control thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:32,965 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:33,029 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:33,065 | INFO     | [data] control thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:33,245 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:33,245 | INFO     | [data] copytool_in thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:34,361 | INFO     | [data] copytool_out thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:06:35,060 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 18:07:28] 2025-11-20 17:07:01,015 | INFO     | PID=1208496 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 18:07:28] 2025-11-20 17:07:01,015 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 18:07:28] 2025-11-20 17:07:01,015 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 18:07:28] 2025-11-20 17:07:01,015 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 18:07:28] 2025-11-20 17:07:22,194 | INFO     | [monitor] cgroup control has ended
[2025-11-20 18:07:28] 2025-11-20 17:07:22,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995379595072)>', '<ExcThread(monitor, started 139994433832704)>']
[2025-11-20 18:07:28] 2025-11-20 17:07:23,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 18:07:28] 2025-11-20 17:07:23,129 | INFO     | [monitor] control thread has ended
[2025-11-20 18:07:28] 2025-11-20 17:07:27,872 | INFO     | all workflow threads have been joined
[2025-11-20 18:07:28] 2025-11-20 17:07:27,872 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 18:07:28] 2025-11-20 17:07:27,873 | INFO     | traces error code: 0
[2025-11-20 18:07:28] 2025-11-20 17:07:27,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 18:07:28] 2025-11-20 17:07:27,921 [wrapper] ==== pilot stdout END ====
[2025-11-20 18:07:28] 2025-11-20 17:07:27,924 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 18:07:28] 2025-11-20 17:07:27,927 [wrapper] pilotpid: 1208496
[2025-11-20 18:07:28] 2025-11-20 17:07:27,930 [wrapper] Pilot exit status: 0
[2025-11-20 18:07:28] 2025-11-20 17:07:27,937 [wrapper] pandaids: 6893847789
[2025-11-20 18:07:28] 2025-11-20 17:07:27,954 [wrapper] cleanup supervisor_pilot 1208502 1208497
[2025-11-20 18:07:28] 2025-11-20 17:07:27,957 [wrapper] Test setup, not cleaning
[2025-11-20 18:07:28] 2025-11-20 17:07:27,960 [wrapper] apfmon messages muted
[2025-11-20 18:07:28] 2025-11-20 17:07:27,962 [wrapper] ==== wrapper stdout END ====
[2025-11-20 18:07:28] 2025-11-20 17:07:27,965 [wrapper] ==== wrapper stderr END ====
[2025-11-20 18:07:28]  *** Error codes and diagnostics ***
[2025-11-20 18:07:28]     "exeErrorCode": 65,
[2025-11-20 18:07:28]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 18:07:28]     "pilotErrorCode": 1305,
[2025-11-20 18:07:28]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 18:07:28]  *** Listing of results directory ***
[2025-11-20 18:07:28] total 403828
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:25 queuedata.json
[2025-11-20 18:07:28] -rwx------ 1 boinc boinc     36292 Nov 20 11:26 runpilot2-wrapper.sh
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc       100 Nov 20 18:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 18:07:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 18:03 run_atlas
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc       105 Nov 20 18:03 job.xml
[2025-11-20 18:07:28] -rw-r--r-- 2 boinc boinc 409326750 Nov 20 18:03 EVNT.47493127._000242.pool.root.1
[2025-11-20 18:07:28] -rw-r--r-- 2 boinc boinc    590101 Nov 20 18:03 input.tar.gz
[2025-11-20 18:07:28] -rw-r--r-- 2 boinc boinc     15847 Nov 20 18:03 start_atlas.sh
[2025-11-20 18:07:28] drwxrwx--x 2 boinc boinc      4096 Nov 20 18:03 shared
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc         0 Nov 20 18:03 boinc_setup_complete
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc      6194 Nov 20 18:03 init_data.xml
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc         0 Nov 20 18:03 boinc_lockfile
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc      2786 Nov 20 18:03 pandaJob.out
[2025-11-20 18:07:28] -rw------- 1 boinc boinc    989440 Nov 20 18:03 agis_schedconf.cvmfs.json
[2025-11-20 18:07:28] -rw------- 1 boinc boinc   1526164 Nov 20 18:03 agis_ddmendpoints.agis.ALL.json
[2025-11-20 18:07:28] drwx------ 5 boinc boinc      4096 Nov 20 18:03 pilot3
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc       523 Nov 20 18:04 boinc_task_state.xml
[2025-11-20 18:07:28] -rw------- 1 boinc boinc       968 Nov 20 18:04 memory_monitor_summary.json
[2025-11-20 18:07:28] -rw------- 1 boinc boinc     55984 Nov 20 18:04 log.47523449._002418.job.log.tgz.1
[2025-11-20 18:07:28] -rw------- 1 boinc boinc        95 Nov 20 18:06 pilot_heartbeat.json
[2025-11-20 18:07:28] -rw------- 1 boinc boinc      8386 Nov 20 18:06 heartbeat.json
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc        22 Nov 20 18:07 wrapper_checkpoint.txt
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc      8192 Nov 20 18:07 boinc_mmap_file
[2025-11-20 18:07:28] -rw------- 1 boinc boinc      4752 Nov 20 18:07 pilotlog.txt
[2025-11-20 18:07:28] -rw------- 1 boinc boinc     91301 Nov 20 18:07 log.47523449._002418.job.log.1
[2025-11-20 18:07:28] -rw------- 1 boinc boinc       186 Nov 20 18:07 output.list
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc       620 Nov 20 18:07 runtime_log
[2025-11-20 18:07:28] -rw------- 1 boinc boinc    163840 Nov 20 18:07 result.tar.gz
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc      8744 Nov 20 18:07 runtime_log.err
[2025-11-20 18:07:28] -rw------- 1 boinc boinc       649 Nov 20 18:07 2EnLDme2Gg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmATGKDmrgvV1n.diag
[2025-11-20 18:07:28] -rw-r--r-- 1 boinc boinc      9698 Nov 20 18:07 stderr.txt
[2025-11-20 18:07:28] No HITS result produced
[2025-11-20 18:07:28]  *** Contents of shared directory: ***
[2025-11-20 18:07:28] total 400496
[2025-11-20 18:07:28] -rw-r--r-- 2 boinc boinc 409326750 Nov 20 18:03 ATLAS.root_0
[2025-11-20 18:07:28] -rw-r--r-- 2 boinc boinc    590101 Nov 20 18:03 input.tar.gz
[2025-11-20 18:07:28] -rw-r--r-- 2 boinc boinc     15847 Nov 20 18:03 start_atlas.sh
[2025-11-20 18:07:28] -rw------- 1 boinc boinc    163840 Nov 20 18:07 result.tar.gz
18:07:29 (1204755): run_atlas exited; CPU time 30.351855
18:07:29 (1204755): called boinc_finish(0)

</stderr_txt>
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