Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
16:23:11 (5412): wrapper (7.7.26015): starting
16:23:11 (5412): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 16:23:11] Arguments: --nthreads 4
[2025-11-20 16:23:11] Threads: 4
[2025-11-20 16:23:11] Checking for CVMFS
[2025-11-20 16:23:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 16:23:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 16:23:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 16:23:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 16:23:15] 2.13.3.0 5622 0 25532 153088 3 1 2662153 4096001 0 130560 0 0 100.000 0 0 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-20 16:23:15] CVMFS is ok
[2025-11-20 16:23:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 16:23:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 16:23:15] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-20 16:23:15] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-20 16:23:15] Further information can be found at the LHC@home message board.
[2025-11-20 16:23:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 16:23:15] Checking for apptainer binary...
[2025-11-20 16:23:15] apptainer is not installed, using version from CVMFS
[2025-11-20 16:23:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 16:23:16] hplaptop
[2025-11-20 16:23:16] apptainer works
[2025-11-20 16:23:16] Set ATHENA_PROC_NUMBER=4
[2025-11-20 16:23:16] Set ATHENA_CORE_NUMBER=4
[2025-11-20 16:23:16] Starting ATLAS job with PandaID=6893849712
[2025-11-20 16:23:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 01:35:06]  *** The last 200 lines of the pilot log: ***
[2025-11-22 01:35:06] 2025-11-22 01:34:14,226 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-22 01:35:06] 2025-11-22 01:34:14,226 | INFO     | log transfer has been attempted: DONE
[2025-11-22 01:35:06] 2025-11-22 01:34:14,227 | INFO     | job 6893849712 has finished - writing final server update
[2025-11-22 01:35:06] 2025-11-22 01:34:14,227 | INFO     | total number of processed events: 1000 (read)
[2025-11-22 01:35:06] 2025-11-22 01:34:14,231 | INFO     | executing command: lscpu
[2025-11-22 01:35:06] 2025-11-22 01:34:14,265 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-22 01:35:06] 2025-11-22 01:34:15,124 | INFO     | time since job start (119434s) is within the limit (172800.0s)
[2025-11-22 01:35:06] 2025-11-22 01:34:15,580 | INFO     | monitor loop #8681: job 0:6893849712 is in state 'finished'
[2025-11-22 01:35:06] 2025-11-22 01:34:15,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:35:06] 2025-11-22 01:34:17,130 | INFO     | time since job start (119436s) is within the limit (172800.0s)
[2025-11-22 01:35:06] 2025-11-22 01:34:18,083 | INFO     | monitor loop #8682: job 0:6893849712 is in state 'finished'
[2025-11-22 01:35:06] 2025-11-22 01:34:18,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:35:06] 2025-11-22 01:34:18,301 | INFO     | PID=9661 has CPU usage=14.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-22 01:35:06] 2025-11-22 01:34:19,302 | INFO     | time since job start (119438s) is within the limit (172800.0s)
[2025-11-22 01:35:06] 2025-11-22 01:34:20,586 | INFO     | monitor loop #8683: job 0:6893849712 is in state 'finished'
[2025-11-22 01:35:06] 2025-11-22 01:34:20,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 01:35:06] 2025-11-22 01:34:21,307 | INFO     | time since job start (119440s) is within the limit (172800.0s)
[2025-11-22 01:35:06] 2025-11-22 01:34:22,291 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 01:35:06] 2025-11-22 01:34:22,293 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 1720.1055000000001
[2025-11-22 01:35:06] 2025-11-22 01:34:22,295 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6893849712/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 01:35:06] 2025-11-22 01:34:22,296 | INFO     | extracted standard info from prmon json
[2025-11-22 01:35:06] 2025-11-22 01:34:22,297 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 01:35:06] 2025-11-22 01:34:22,297 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 01:35:06] 2025-11-22 01:34:22,333 | INFO     | fitting pss+swap vs Time
[2025-11-22 01:35:06] 2025-11-22 01:34:22,336 | INFO     | sum of square deviations: 2327642970311.5
[2025-11-22 01:35:06] 2025-11-22 01:34:22,431 | INFO     | sum of deviations: 26255783880408.715
[2025-11-22 01:35:06] 2025-11-22 01:34:22,431 | INFO     | mean x: 1763715544.5005107
[2025-11-22 01:35:06] 2025-11-22 01:34:22,431 | INFO     | mean y: 2559179.2880490297
[2025-11-22 01:35:06] 2025-11-22 01:34:22,431 | INFO     | intersect: -19892130321.44994
[2025-11-22 01:35:06] 2025-11-22 01:34:22,434 | INFO     | chi2: 33.899043774588826
[2025-11-22 01:35:06] 2025-11-22 01:34:22,436 | INFO     | sum of square deviations: 2309856674339.002
[2025-11-22 01:35:06] 2025-11-22 01:34:22,536 | INFO     | sum of deviations: 26822316669950.29
[2025-11-22 01:35:06] 2025-11-22 01:34:22,536 | INFO     | mean x: 1763715392.0005121
[2025-11-22 01:35:06] 2025-11-22 01:34:22,536 | INFO     | mean y: 2564036.709677419
[2025-11-22 01:35:06] 2025-11-22 01:34:22,536 | INFO     | intersect: -20477898359.7032
[2025-11-22 01:35:06] 2025-11-22 01:34:22,539 | INFO     | chi2: 30.836229003442444
[2025-11-22 01:35:06] 2025-11-22 01:34:22,539 | INFO     | current chi2=30.836229003442444 (change=9.03510668770636 %)
[2025-11-22 01:35:06] 2025-11-22 01:34:22,539 | INFO     | right removable region: 1952
[2025-11-22 01:35:06] 2025-11-22 01:34:22,542 | INFO     | sum of square deviations: 2309856673729.0024
[2025-11-22 01:35:06] 2025-11-22 01:34:22,642 | INFO     | sum of deviations: 25773662758230.797
[2025-11-22 01:35:06] 2025-11-22 01:34:22,642 | INFO     | mean x: 1763715697.0005121
[2025-11-22 01:35:06] 2025-11-22 01:34:22,642 | INFO     | mean y: 2563311.2206861237
[2025-11-22 01:35:06] 2025-11-22 01:34:22,642 | INFO     | intersect: -19677191754.49225
[2025-11-22 01:35:06] 2025-11-22 01:34:22,645 | INFO     | chi2: 32.07694349299851
[2025-11-22 01:35:06] 2025-11-22 01:34:22,645 | INFO     | current chi2=32.07694349299851 (change=5.375078700468203 %)
[2025-11-22 01:35:06] 2025-11-22 01:34:22,645 | INFO     | left removable region: 10
[2025-11-22 01:35:06] 2025-11-22 01:34:22,648 | INFO     | sum of square deviations: 2271046247503.499
[2025-11-22 01:35:06] 2025-11-22 01:34:22,746 | INFO     | sum of deviations: 26362990519899.605
[2025-11-22 01:35:06] 2025-11-22 01:34:22,747 | INFO     | mean x: 1763715666.500515
[2025-11-22 01:35:06] 2025-11-22 01:34:22,747 | INFO     | mean y: 2570476.9191555097
[2025-11-22 01:35:06] 2025-11-22 01:34:22,747 | INFO     | intersect: -20471173484.422104
[2025-11-22 01:35:06] 2025-11-22 01:34:22,749 | INFO     | chi2: 28.08763062368773
[2025-11-22 01:35:06] 2025-11-22 01:34:22,750 | INFO     | current memory leak: 11.61 B/s (using 1942 data points, chi2=28.09)
[2025-11-22 01:35:06] 2025-11-22 01:34:22,752 | INFO     | could have reported an average CPU frequency of 2244 MHz (69 samples)
[2025-11-22 01:35:06] 2025-11-22 01:34:22,753 | INFO     | ..............................
[2025-11-22 01:35:06] 2025-11-22 01:34:22,753 | INFO     | . Timing measurements:
[2025-11-22 01:35:06] 2025-11-22 01:34:22,753 | INFO     | . get job = 0 s
[2025-11-22 01:35:06] 2025-11-22 01:34:22,753 | INFO     | . initial setup = 2 s
[2025-11-22 01:35:06] 2025-11-22 01:34:22,753 | INFO     | . payload setup = 9 s
[2025-11-22 01:35:06] 2025-11-22 01:34:22,753 | INFO     | . stage-in = 0 s
[2025-11-22 01:35:06] 2025-11-22 01:34:22,753 | INFO     | . payload execution = 119395 s
[2025-11-22 01:35:06] 2025-11-22 01:34:22,753 | INFO     | . stage-out = 3 s
[2025-11-22 01:35:06] 2025-11-22 01:34:22,754 | INFO     | . log creation = 0 s
[2025-11-22 01:35:06] 2025-11-22 01:34:22,754 | INFO     | ..............................
[2025-11-22 01:35:06] 2025-11-22 01:34:23,119 | INFO     | 
[2025-11-22 01:35:06] 2025-11-22 01:34:23,120 | INFO     | job summary report
[2025-11-22 01:35:06] 2025-11-22 01:34:23,120 | INFO     | --------------------------------------------------
[2025-11-22 01:35:06] 2025-11-22 01:34:23,120 | INFO     | PanDA job id: 6893849712
[2025-11-22 01:35:06] 2025-11-22 01:34:23,120 | INFO     | task id: 47523449
[2025-11-22 01:35:06] 2025-11-22 01:34:23,120 | INFO     | errors: (none)
[2025-11-22 01:35:06] 2025-11-22 01:34:23,121 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 01:35:06] 2025-11-22 01:34:23,121 | INFO     | pilot state: finished 
[2025-11-22 01:35:06] 2025-11-22 01:34:23,121 | INFO     | transexitcode: 0
[2025-11-22 01:35:06] 2025-11-22 01:34:23,121 | INFO     | exeerrorcode: 0
[2025-11-22 01:35:06] 2025-11-22 01:34:23,121 | INFO     | exeerrordiag: 
[2025-11-22 01:35:06] 2025-11-22 01:34:23,121 | INFO     | exitcode: 0
[2025-11-22 01:35:06] 2025-11-22 01:34:23,122 | INFO     | exitmsg: OK
[2025-11-22 01:35:06] 2025-11-22 01:34:23,122 | INFO     | cpuconsumptiontime: 461412 s
[2025-11-22 01:35:06] 2025-11-22 01:34:23,122 | INFO     | nevents: 1000
[2025-11-22 01:35:06] 2025-11-22 01:34:23,122 | INFO     | neventsw: 0
[2025-11-22 01:35:06] 2025-11-22 01:34:23,122 | INFO     | pid: 16038
[2025-11-22 01:35:06] 2025-11-22 01:34:23,123 | INFO     | pgrp: 16038
[2025-11-22 01:35:06] 2025-11-22 01:34:23,123 | INFO     | corecount: 4
[2025-11-22 01:35:06] 2025-11-22 01:34:23,123 | INFO     | event service: False
[2025-11-22 01:35:06] 2025-11-22 01:34:23,123 | INFO     | sizes: {0: 2297928, 1: 2298791, 2: 2298791, 8: 2299081, 12: 2299109, 119408: 2379486, 119409: 2379613, 119413: 2388677, 119414: 2388733, 119423: 2388979}
[2025-11-22 01:35:06] 2025-11-22 01:34:23,123 | INFO     | --------------------------------------------------
[2025-11-22 01:35:06] 2025-11-22 01:34:23,123 | INFO     | 
[2025-11-22 01:35:06] 2025-11-22 01:34:23,124 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-22 01:35:06] 2025-11-22 01:34:23,150 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,151 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,151 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,151 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,151 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,151 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,152 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,152 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,152 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,152 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,152 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,152 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,152 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,152 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,153 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,153 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,153 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 01:35:06] 2025-11-22 01:34:23,153 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,153 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 01:35:06] 2025-11-22 01:34:23,153 | INFO     | job 6893849712 has completed (purged errors)
[2025-11-22 01:35:06] 2025-11-22 01:34:23,154 | INFO     | overall cleanup function is called
[2025-11-22 01:35:06] 2025-11-22 01:34:24,168 | INFO     | --- collectZombieJob: --- 10, [16038]
[2025-11-22 01:35:06] 2025-11-22 01:34:24,169 | INFO     | zombie collector waiting for pid 16038
[2025-11-22 01:35:06] 2025-11-22 01:34:24,169 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 01:35:06] 2025-11-22 01:34:24,169 | INFO     | collected zombie processes
[2025-11-22 01:35:06] 2025-11-22 01:34:24,169 | INFO     | will attempt to kill all subprocesses of pid=16038
[2025-11-22 01:35:06] 2025-11-22 01:34:24,269 | INFO     | process IDs to be killed: [16038] (in reverse order)
[2025-11-22 01:35:06] 2025-11-22 01:34:24,318 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 01:35:06] 2025-11-22 01:34:24,318 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 01:35:06] 2025-11-22 01:34:24,322 | INFO     | did not find any defunct processes belonging to 16038
[2025-11-22 01:35:06] 2025-11-22 01:34:24,325 | INFO     | did not find any defunct processes belonging to 16038
[2025-11-22 01:35:06] 2025-11-22 01:34:24,327 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 01:35:06] 2025-11-22 01:34:24,327 | INFO     | ready for new job
[2025-11-22 01:35:06] 2025-11-22 01:34:24,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 01:35:06] 2025-11-22 01:34:24,356 | INFO     | ***************************************
[2025-11-22 01:35:06] 2025-11-22 01:34:24,356 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 01:35:06] 2025-11-22 01:34:24,356 | INFO     | ***************************************
[2025-11-22 01:35:06] 2025-11-22 01:34:24,356 | INFO     | 
[2025-11-22 01:35:06] 2025-11-22 01:34:24,357 | INFO     | architecture information:
[2025-11-22 01:35:06] 2025-11-22 01:34:24,358 | INFO     | executing command: cat /etc/os-release
[2025-11-22 01:35:06] 2025-11-22 01:34:24,376 | INFO     | cat /etc/os-release:
[2025-11-22 01:35:06] NAME="CentOS Linux"
[2025-11-22 01:35:06] VERSION="7 (Core)"
[2025-11-22 01:35:06] ID="centos"
[2025-11-22 01:35:06] ID_LIKE="rhel fedora"
[2025-11-22 01:35:06] VERSION_ID="7"
[2025-11-22 01:35:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 01:35:06] ANSI_COLOR="0;31"
[2025-11-22 01:35:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 01:35:06] HOME_URL="https://www.centos.org/"
[2025-11-22 01:35:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 01:35:06] 
[2025-11-22 01:35:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 01:35:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 01:35:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 01:35:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 01:35:06] 
[2025-11-22 01:35:06] 2025-11-22 01:34:24,377 | INFO     | ***************************************
[2025-11-22 01:35:06] 2025-11-22 01:34:24,880 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-22 01:35:06] 2025-11-22 01:34:24,915 | INFO     | sufficient remaining disk space (306009079808 B)
[2025-11-22 01:35:06] 2025-11-22 01:34:24,916 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 01:35:06] 2025-11-22 01:34:24,916 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 01:35:06] 2025-11-22 01:34:24,916 | INFO     | update_server=False
[2025-11-22 01:35:06] 2025-11-22 01:34:24,916 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 01:35:06] 2025-11-22 01:34:24,917 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:35:06] 2025-11-22 01:34:24,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 01:35:06] 2025-11-22 01:34:24,917 | INFO     | aborting loop
[2025-11-22 01:35:06] 2025-11-22 01:34:25,443 | INFO     | all payload control threads have been joined
[2025-11-22 01:35:06] 2025-11-22 01:34:25,906 | INFO     | all data control threads have been joined
[2025-11-22 01:35:06] 2025-11-22 01:34:25,918 | INFO     | [job] retrieve thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:25,918 | INFO     | all job control threads have been joined
[2025-11-22 01:35:06] 2025-11-22 01:34:25,924 | INFO     | [job] job monitor thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:25,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 01:35:06] 2025-11-22 01:34:26,146 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:26,450 | INFO     | [payload] control thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:26,690 | INFO     | [payload] failed_post thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:26,912 | INFO     | [data] control thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:26,925 | INFO     | [job] control thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:27,014 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:27,016 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:27,017 | INFO     | [job] validate thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:27,173 | INFO     | [data] copytool_in thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:27,254 | INFO     | [payload] validate_post thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:27,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:35:06] 2025-11-22 01:34:27,941 | INFO     | [data] copytool_out thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:28,892 | INFO     | [job] queue monitor thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:28,925 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:35,914 | INFO     | job.realtimelogging is not enabled
[2025-11-22 01:35:06] 2025-11-22 01:34:36,920 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 01:35:06] 2025-11-22 01:34:54,526 | INFO     | PID=9661 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-22 01:35:06] 2025-11-22 01:34:54,528 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 01:35:06] 2025-11-22 01:34:54,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 01:35:06] 2025-11-22 01:34:54,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 01:35:06] 2025-11-22 01:35:00,115 | INFO     | [monitor] cgroup control has ended
[2025-11-22 01:35:06] 2025-11-22 01:35:01,119 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131826646177600)>', '<ExcThread(monitor, started 131825968084736)>']
[2025-11-22 01:35:06] 2025-11-22 01:35:01,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 01:35:06] 2025-11-22 01:35:01,559 | INFO     | [monitor] control thread has ended
[2025-11-22 01:35:06] 2025-11-22 01:35:06,145 | INFO     | all workflow threads have been joined
[2025-11-22 01:35:06] 2025-11-22 01:35:06,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 01:35:06] 2025-11-22 01:35:06,146 | INFO     | traces error code: 0
[2025-11-22 01:35:06] 2025-11-22 01:35:06,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 01:35:06] 2025-11-22 01:35:06,360 [wrapper] ==== pilot stdout END ====
[2025-11-22 01:35:06] 2025-11-22 01:35:06,364 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 01:35:06] 2025-11-22 01:35:06,368 [wrapper] pilotpid: 9661
[2025-11-22 01:35:06] 2025-11-22 01:35:06,372 [wrapper] Pilot exit status: 0
[2025-11-22 01:35:06] 2025-11-22 01:35:06,389 [wrapper] pandaids: 6893849712
[2025-11-22 01:35:06] 2025-11-22 01:35:06,426 [wrapper] cleanup supervisor_pilot  199740 9662
[2025-11-22 01:35:06] 2025-11-22 01:35:06,430 [wrapper] Test setup, not cleaning
[2025-11-22 01:35:06] 2025-11-22 01:35:06,434 [wrapper] apfmon messages muted
[2025-11-22 01:35:06] 2025-11-22 01:35:06,439 [wrapper] ==== wrapper stdout END ====
[2025-11-22 01:35:06] 2025-11-22 01:35:06,443 [wrapper] ==== wrapper stderr END ====
[2025-11-22 01:35:06]  *** Error codes and diagnostics ***
[2025-11-22 01:35:06]     "exeErrorCode": 0,
[2025-11-22 01:35:06]     "exeErrorDiag": "",
[2025-11-22 01:35:06]     "pilotErrorCode": 0,
[2025-11-22 01:35:06]     "pilotErrorDiag": "",
[2025-11-22 01:35:06]  *** Listing of results directory ***
[2025-11-22 01:35:06] total 1329096
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc      5112 Nov 20 10:57 queuedata.json
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc    576529 Nov 20 10:57 pilot3.tar.gz
[2025-11-22 01:35:06] -rwx------ 1 boinc boinc     36292 Nov 20 10:58 runpilot2-wrapper.sh
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc       100 Nov 20 16:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 01:35:06] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 16:23 run_atlas
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc       105 Nov 20 16:23 job.xml
[2025-11-22 01:35:06] -rw-r--r-- 2 boinc boinc 408199103 Nov 20 16:23 EVNT.47493127._000301.pool.root.1
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc      8971 Nov 20 16:23 init_data.xml
[2025-11-22 01:35:06] drwxrwx--x 1 boinc boinc        76 Nov 20 16:23 shared
[2025-11-22 01:35:06] -rw-r--r-- 2 boinc boinc    590103 Nov 20 16:23 input.tar.gz
[2025-11-22 01:35:06] -rw-r--r-- 2 boinc boinc     15847 Nov 20 16:23 start_atlas.sh
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc         0 Nov 20 16:23 boinc_lockfile
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc      2785 Nov 20 16:23 pandaJob.out
[2025-11-22 01:35:06] -rw------- 1 boinc boinc    989440 Nov 20 16:23 agis_schedconf.cvmfs.json
[2025-11-22 01:35:06] drwx------ 1 boinc boinc       414 Nov 20 16:23 pilot3
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc       533 Nov 22 01:20 boinc_task_state.xml
[2025-11-22 01:35:06] -rw------- 1 boinc boinc 911383754 Nov 22 01:33 HITS.47523449._003005.pool.root.1
[2025-11-22 01:35:06] -rw------- 1 boinc boinc      1061 Nov 22 01:34 memory_monitor_summary.json
[2025-11-22 01:35:06] -rw------- 1 boinc boinc   1526164 Nov 22 01:34 agis_ddmendpoints.agis.ALL.json
[2025-11-22 01:35:06] -rw------- 1 boinc boinc   2445799 Nov 22 01:34 log.47523449._003005.job.log.tgz.1
[2025-11-22 01:35:06] -rw------- 1 boinc boinc      8662 Nov 22 01:34 heartbeat.json
[2025-11-22 01:35:06] -rw------- 1 boinc boinc        95 Nov 22 01:34 pilot_heartbeat.json
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc        30 Nov 22 01:35 wrapper_checkpoint.txt
[2025-11-22 01:35:06] -rw------- 1 boinc boinc      4825 Nov 22 01:35 pilotlog.txt
[2025-11-22 01:35:06] -rw------- 1 boinc boinc  16309592 Nov 22 01:35 log.47523449._003005.job.log.1
[2025-11-22 01:35:06] -rw------- 1 boinc boinc       353 Nov 22 01:35 output.list
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc      8192 Nov 22 01:35 boinc_mmap_file
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc       620 Nov 22 01:35 runtime_log
[2025-11-22 01:35:06] -rw------- 1 boinc boinc  18769920 Nov 22 01:35 result.tar.gz
[2025-11-22 01:35:06] -rw------- 1 boinc boinc       669 Nov 22 01:35 RuRLDmeXHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdZHKDm2jwRLn.diag
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc      8914 Nov 22 01:35 runtime_log.err
[2025-11-22 01:35:06] -rw-r--r-- 1 boinc boinc     22067 Nov 22 01:35 stderr.txt
[2025-11-22 01:35:06] HITS file was successfully produced:
[2025-11-22 01:35:06] -rw------- 1 boinc boinc 911383754 Nov 22 01:33 shared/HITS.pool.root.1
[2025-11-22 01:35:06]  *** Contents of shared directory: ***
[2025-11-22 01:35:06] total 1307584
[2025-11-22 01:35:06] -rw-r--r-- 2 boinc boinc 408199103 Nov 20 16:23 ATLAS.root_0
[2025-11-22 01:35:06] -rw-r--r-- 2 boinc boinc    590103 Nov 20 16:23 input.tar.gz
[2025-11-22 01:35:06] -rw-r--r-- 2 boinc boinc     15847 Nov 20 16:23 start_atlas.sh
[2025-11-22 01:35:06] -rw------- 1 boinc boinc 911383754 Nov 22 01:33 HITS.pool.root.1
[2025-11-22 01:35:06] -rw------- 1 boinc boinc  18769920 Nov 22 01:35 result.tar.gz
01:35:07 (5412): run_atlas exited; CPU time 463218.189825
01:35:07 (5412): called boinc_finish(0)

</stderr_txt>
]]>

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