Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:54:06 (1604848): wrapper (7.7.26015): starting
07:54:06 (1604848): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 07:54:06] Arguments: --nthreads 8
[2025-11-20 07:54:06] Threads: 8
[2025-11-20 07:54:06] Checking for CVMFS
[2025-11-20 07:54:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 07:54:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 07:54:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 07:54:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 07:54:08] 2.11.3.0 1070807 19950 218352 153086 0 309 23140640 45568001 13229 130560 0 138958563 99.818 71089813 18159 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-20 07:54:08] CVMFS is ok
[2025-11-20 07:54:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 07:54:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 07:54:08] Further information can be found at the LHC@home message board.
[2025-11-20 07:54:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 07:54:08] Checking for apptainer binary...
[2025-11-20 07:54:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 07:54:08] Running /usr/bin/apptainer --version
[2025-11-20 07:54:08] apptainer version 1.4.1-1.el9
[2025-11-20 07:54:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 07:54:09] wns0007.triumf.lcg
[2025-11-20 07:54:09] apptainer works
[2025-11-20 07:54:10] Set ATHENA_PROC_NUMBER=8
[2025-11-20 07:54:10] Set ATHENA_CORE_NUMBER=8
[2025-11-20 07:54:10] Starting ATLAS job with PandaID=6893850223
[2025-11-20 07:54:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 08:01:10]  *** The last 200 lines of the pilot log: ***
[2025-11-20 08:01:10] 2025-11-20 16:00:37,804 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 08:01:10] 2025-11-20 16:00:37,805 | WARNING  | wrong length of table data, x=[1763654180.0, 1763654241.0], y=[1713.0, 799228.0] (must be same and length>=4)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | ..............................
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . Timing measurements:
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . get job = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . initial setup = 5 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . payload setup = 27 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . stage-in = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . payload execution = 132 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . stage-out = 1 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . log creation = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | ..............................
[2025-11-20 08:01:10] 2025-11-20 16:00:37,807 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 08:01:10] 2025-11-20 16:00:37,807 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893850223/pilotlog.txt
[2025-11-20 08:01:10] 2025-11-20 16:00:37,853 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 08:01:10] - Log from pilotlog.txt -
[2025-11-20 08:01:10] 2025-11-20 16:00:37,802 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893850223/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,803 | INFO     | extracted standard info from prmon json
[2025-11-20 08:01:10] 2025-11-20 16:00:37,803 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 08:01:10] 2025-11-20 16:00:37,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 08:01:10] 2025-11-20 16:00:37,804 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 08:01:10] 2025-11-20 16:00:37,804 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 08:01:10] 2025-11-20 16:00:37,805 | WARNING  | wrong length of table data, x=[1763654180.0, 1763654241.0], y=[1713.0, 799228.0] (must be same and length>=4)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | ..............................
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . Timing measurements:
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . get job = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . initial setup = 5 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . payload setup = 27 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . stage-in = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . payload execution = 132 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . stage-out = 1 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . log creation = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | ..............................
[2025-11-20 08:01:10] 2025-11-20 16:00:37,807 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 08:01:10] 2025-11-20 16:00:37,807 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893850223/pilotlog.txt
[2025-11-20 08:01:10] 2025-11-20 16:00:37,853 | WARNING  | 
[2025-11-20 08:01:10] [begin log extracts]
[2025-11-20 08:01:10] - Log from pilotlog.txt -
[2025-11-20 08:01:10] 2025-11-20 16:00:37,802 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893850223/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,803 | INFO     | extracted standard info from prmon json
[2025-11-20 08:01:10] 2025-11-20 16:00:37,803 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 08:01:10] 2025-11-20 16:00:37,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 08:01:10] 2025-11-20 16:00:37,804 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 08:01:10] 2025-11-20 16:00:37,804 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 08:01:10] 2025-11-20 16:00:37,805 | WARNING  | wrong length of table data, x=[1763654180.0, 1763654241.0], y=[1713.0, 799228.0] (must be same and length>=4)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | ..............................
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . Timing measurements:
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . get job = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . initial setup = 5 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . payload setup = 27 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . stage-in = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . payload execution = 132 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . stage-out = 1 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | . log creation = 0 s
[2025-11-20 08:01:10] 2025-11-20 16:00:37,806 | INFO     | ..............................
[2025-11-20 08:01:10] 2025-11-20 16:00:37,807 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 08:01:10] 2025-11-20 16:00:37,807 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893850223/pilotlog.txt
[2025-11-20 08:01:10] [end log extracts]
[2025-11-20 08:01:10] 2025-11-20 16:00:37,853 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 08:01:10] 2025-11-20 16:00:37,854 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 08:01:10] 2025-11-20 16:00:38,062 | INFO     | 
[2025-11-20 08:01:10] 2025-11-20 16:00:38,063 | INFO     | job summary report
[2025-11-20 08:01:10] 2025-11-20 16:00:38,063 | INFO     | --------------------------------------------------
[2025-11-20 08:01:10] 2025-11-20 16:00:38,063 | INFO     | PanDA job id: 6893850223
[2025-11-20 08:01:10] 2025-11-20 16:00:38,063 | INFO     | task id: 47523449
[2025-11-20 08:01:10] 2025-11-20 16:00:38,063 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 07:58:14,522 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | pilot state: failed 
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | transexitcode: 65
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | exeerrorcode: 65
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | exitcode: 65
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | cpuconsumptiontime: 48 s
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | nevents: 0
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | neventsw: 0
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | pid: 1615390
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | pgrp: 1615390
[2025-11-20 08:01:10] 2025-11-20 16:00:38,064 | INFO     | corecount: 8
[2025-11-20 08:01:10] 2025-11-20 16:00:38,065 | INFO     | event service: False
[2025-11-20 08:01:10] 2025-11-20 16:00:38,065 | INFO     | sizes: {0: 2298577, 1: 2298661, 2: 2298860, 13: 2298860, 19: 2299178, 24: 2299206, 160: 2324754, 163: 2329044, 166: 2329072, 298: 2329238}
[2025-11-20 08:01:10] 2025-11-20 16:00:38,065 | INFO     | --------------------------------------------------
[2025-11-20 08:01:10] 2025-11-20 16:00:38,065 | INFO     | 
[2025-11-20 08:01:10] 2025-11-20 16:00:38,065 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 08:01:10] 2025-11-20 16:00:38,200 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,200 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,200 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,200 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,201 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 08:01:10] 2025-11-20 16:00:38,202 | INFO     | job 6893850223 has completed (purged errors)
[2025-11-20 08:01:10] 2025-11-20 16:00:38,202 | INFO     | overall cleanup function is called
[2025-11-20 08:01:10] 2025-11-20 16:00:39,210 | INFO     | --- collectZombieJob: --- 10, [1615390]
[2025-11-20 08:01:10] 2025-11-20 16:00:39,210 | INFO     | zombie collector waiting for pid 1615390
[2025-11-20 08:01:10] 2025-11-20 16:00:39,211 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 08:01:10] 2025-11-20 16:00:39,211 | INFO     | collected zombie processes
[2025-11-20 08:01:10] 2025-11-20 16:00:39,211 | INFO     | will attempt to kill all subprocesses of pid=1615390
[2025-11-20 08:01:10] 2025-11-20 16:00:39,589 | INFO     | process IDs to be killed: [1615390] (in reverse order)
[2025-11-20 08:01:10] 2025-11-20 16:00:39,660 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 08:01:10] 2025-11-20 16:00:39,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 08:01:10] 2025-11-20 16:00:39,695 | INFO     | did not find any defunct processes belonging to 1615390
[2025-11-20 08:01:10] 2025-11-20 16:00:39,703 | INFO     | did not find any defunct processes belonging to 1615390
[2025-11-20 08:01:10] 2025-11-20 16:00:39,704 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 08:01:10] 2025-11-20 16:00:39,704 | INFO     | ready for new job
[2025-11-20 08:01:10] 2025-11-20 16:00:39,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 08:01:10] 2025-11-20 16:00:39,706 | INFO     | ***************************************
[2025-11-20 08:01:10] 2025-11-20 16:00:39,706 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 08:01:10] 2025-11-20 16:00:39,706 | INFO     | ***************************************
[2025-11-20 08:01:10] 2025-11-20 16:00:39,706 | INFO     | 
[2025-11-20 08:01:10] 2025-11-20 16:00:39,716 | INFO     | architecture information:
[2025-11-20 08:01:10] 2025-11-20 16:00:39,735 | INFO     | executing command: cat /etc/os-release
[2025-11-20 08:01:10] 2025-11-20 16:00:39,823 | INFO     | cat /etc/os-release:
[2025-11-20 08:01:10] NAME="CentOS Linux"
[2025-11-20 08:01:10] VERSION="7 (Core)"
[2025-11-20 08:01:10] ID="centos"
[2025-11-20 08:01:10] ID_LIKE="rhel fedora"
[2025-11-20 08:01:10] VERSION_ID="7"
[2025-11-20 08:01:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 08:01:10] ANSI_COLOR="0;31"
[2025-11-20 08:01:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 08:01:10] HOME_URL="https://www.centos.org/"
[2025-11-20 08:01:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 08:01:10] 
[2025-11-20 08:01:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 08:01:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 08:01:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 08:01:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 08:01:10] 
[2025-11-20 08:01:10] 2025-11-20 16:00:39,823 | INFO     | ***************************************
[2025-11-20 08:01:10] 2025-11-20 16:00:40,327 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 08:01:10] 2025-11-20 16:00:40,424 | INFO     | sufficient remaining disk space (1130589323264 B)
[2025-11-20 08:01:10] 2025-11-20 16:00:40,425 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 08:01:10] 2025-11-20 16:00:40,425 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 08:01:10] 2025-11-20 16:00:40,425 | INFO     | update_server=False
[2025-11-20 08:01:10] 2025-11-20 16:00:40,425 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 08:01:10] 2025-11-20 16:00:40,426 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 08:01:10] 2025-11-20 16:00:40,426 | INFO     | aborting loop
[2025-11-20 08:01:10] 2025-11-20 16:00:40,741 | INFO     | all data control threads have been joined
[2025-11-20 08:01:10] 2025-11-20 16:00:41,215 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 08:01:10] 2025-11-20 16:00:41,432 | INFO     | [job] job monitor thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:41,435 | INFO     | [job] retrieve thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:41,506 | INFO     | [payload] failed_post thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:41,542 | INFO     | all payload control threads have been joined
[2025-11-20 08:01:10] 2025-11-20 16:00:41,747 | INFO     | [data] control thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:41,769 | INFO     | [payload] validate_post thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:41,830 | INFO     | all job control threads have been joined
[2025-11-20 08:01:10] 2025-11-20 16:00:42,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:42,239 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:42,493 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:42,512 | INFO     | [job] validate thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:42,547 | INFO     | [payload] control thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:42,836 | INFO     | [job] control thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:42,867 | INFO     | [data] copytool_in thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:42,873 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:42,968 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 08:01:10] 2025-11-20 16:00:43,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 08:01:10] 2025-11-20 16:00:43,226 | INFO     | [data] copytool_out thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:43,974 | INFO     | [job] queue monitor thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:47,157 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 08:01:10] 2025-11-20 16:00:56,269 | INFO     | [monitor] cgroup control has ended
[2025-11-20 08:01:10] 2025-11-20 16:00:57,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139889924904768)>', '<ExcThread(monitor, started 139889014200064)>']
[2025-11-20 08:01:10] 2025-11-20 16:01:02,301 | INFO     | all workflow threads have been joined
[2025-11-20 08:01:10] 2025-11-20 16:01:02,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 08:01:10] 2025-11-20 16:01:02,301 | INFO     | traces error code: 0
[2025-11-20 08:01:10] 2025-11-20 16:01:02,302 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 08:01:10] 2025-11-20 16:01:09,517 | INFO     | PID=1608576 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 08:01:10] 2025-11-20 16:01:09,517 | INFO     | .. there are 26 such processes running
[2025-11-20 08:01:10] 2025-11-20 16:01:09,518 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 08:01:10] 2025-11-20 16:01:09,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 08:01:10] 2025-11-20 16:01:09,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 08:01:10] 2025-11-20 16:01:09,518 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 08:01:10] 2025-11-20 16:01:09,518 | INFO     | [monitor] control thread has ended
[2025-11-20 08:01:10] 2025-11-20 16:01:09,634 [wrapper] ==== pilot stdout END ====
[2025-11-20 08:01:10] 2025-11-20 16:01:09,637 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 08:01:10] 2025-11-20 16:01:09,638 [wrapper] pilotpid: 1608576
[2025-11-20 08:01:10] 2025-11-20 16:01:09,640 [wrapper] Pilot exit status: 0
[2025-11-20 08:01:10] 2025-11-20 16:01:09,719 [wrapper] pandaids: 6893850223
[2025-11-20 08:01:10] 2025-11-20 16:01:09,758 [wrapper] cleanup supervisor_pilot 1608582 1608577
[2025-11-20 08:01:10] 2025-11-20 16:01:09,760 [wrapper] Test setup, not cleaning
[2025-11-20 08:01:10] 2025-11-20 16:01:09,762 [wrapper] apfmon messages muted
[2025-11-20 08:01:10] 2025-11-20 16:01:09,764 [wrapper] ==== wrapper stdout END ====
[2025-11-20 08:01:10] 2025-11-20 16:01:09,766 [wrapper] ==== wrapper stderr END ====
[2025-11-20 08:01:10]  *** Error codes and diagnostics ***
[2025-11-20 08:01:10]     "exeErrorCode": 65,
[2025-11-20 08:01:10]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 08:01:10]     "pilotErrorCode": 1305,
[2025-11-20 08:01:10]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 08:01:10]  *** Listing of results directory ***
[2025-11-20 08:01:10] total 403256
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc    576529 Nov 20 03:09 pilot3.tar.gz
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc      5112 Nov 20 03:15 queuedata.json
[2025-11-20 08:01:10] -rwx------. 1 boinc boinc     36292 Nov 20 03:16 runpilot2-wrapper.sh
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc       100 Nov 20 07:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 08:01:10] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 07:54 run_atlas
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc       105 Nov 20 07:54 job.xml
[2025-11-20 08:01:10] -rw-r--r--. 2 boinc boinc 408707085 Nov 20 07:54 EVNT.47493127._000321.pool.root.1
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc      6444 Nov 20 07:54 init_data.xml
[2025-11-20 08:01:10] -rw-r--r--. 2 boinc boinc     15847 Nov 20 07:54 start_atlas.sh
[2025-11-20 08:01:10] drwxrwx--x. 2 boinc boinc      4096 Nov 20 07:54 shared
[2025-11-20 08:01:10] -rw-r--r--. 2 boinc boinc    590099 Nov 20 07:54 input.tar.gz
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc         0 Nov 20 07:54 boinc_lockfile
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc      2786 Nov 20 07:54 pandaJob.out
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc    989440 Nov 20 07:54 agis_schedconf.cvmfs.json
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc   1526164 Nov 20 07:54 agis_ddmendpoints.agis.ALL.json
[2025-11-20 08:01:10] drwx------. 5 boinc boinc      4096 Nov 20 07:54 pilot3
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc       524 Nov 20 07:58 boinc_task_state.xml
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc       997 Nov 20 07:58 memory_monitor_summary.json
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc     48507 Nov 20 07:58 log.47523449._003205.job.log.tgz.1
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc     10330 Nov 20 08:00 heartbeat.json
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc      8192 Nov 20 08:01 boinc_mmap_file
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc       823 Nov 20 08:01 pilotlog.txt
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc        95 Nov 20 08:01 pilot_heartbeat.json
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc    108447 Nov 20 08:01 log.47523449._003205.job.log.1
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc        23 Nov 20 08:01 wrapper_checkpoint.txt
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc       186 Nov 20 08:01 output.list
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc       620 Nov 20 08:01 runtime_log
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc    174080 Nov 20 08:01 result.tar.gz
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc      8634 Nov 20 08:01 runtime_log.err
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc       647 Nov 20 08:01 AZiLDmSpHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqbHKDmgWMIYn.diag
[2025-11-20 08:01:10] -rw-r--r--. 1 boinc boinc     22506 Nov 20 08:01 stderr.txt
[2025-11-20 08:01:10] No HITS result produced
[2025-11-20 08:01:10]  *** Contents of shared directory: ***
[2025-11-20 08:01:10] total 399904
[2025-11-20 08:01:10] -rw-r--r--. 2 boinc boinc 408707085 Nov 20 07:54 ATLAS.root_0
[2025-11-20 08:01:10] -rw-r--r--. 2 boinc boinc     15847 Nov 20 07:54 start_atlas.sh
[2025-11-20 08:01:10] -rw-r--r--. 2 boinc boinc    590099 Nov 20 07:54 input.tar.gz
[2025-11-20 08:01:10] -rw-------. 1 boinc boinc    174080 Nov 20 08:01 result.tar.gz
08:01:11 (1604848): run_atlas exited; CPU time 53.515508
08:01:11 (1604848): called boinc_finish(0)

</stderr_txt>
]]>

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