Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:27:27 (3351985): wrapper (7.7.26015): starting
17:27:27 (3351985): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 17:27:27] Arguments: --nthreads 8
[2025-11-20 17:27:27] Threads: 8
[2025-11-20 17:27:27] Checking for CVMFS
[2025-11-20 17:27:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:27:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:27:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:27:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:27:29] 2.13.2.0 7533 23520 234196 153098 1 146 35134619 39288833 7651 16776704 0 12225912 99.622 13386018 32934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 17:27:29] CVMFS is ok
[2025-11-20 17:27:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:27:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:27:29] Further information can be found at the LHC@home message board.
[2025-11-20 17:27:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:27:29] Checking for apptainer binary...
[2025-11-20 17:27:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:27:29] Running /usr/bin/apptainer --version
[2025-11-20 17:27:29] apptainer version 1.4.4-1.el9
[2025-11-20 17:27:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:27:30] c-211-31.aglt2.org
[2025-11-20 17:27:30] apptainer works
[2025-11-20 17:27:30] Set ATHENA_PROC_NUMBER=8
[2025-11-20 17:27:30] Set ATHENA_CORE_NUMBER=8
[2025-11-20 17:27:30] Starting ATLAS job with PandaID=6893848030
[2025-11-20 17:27:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 05:03:35]  *** The last 200 lines of the pilot log: ***
[2025-11-22 05:03:35] 2025-11-22 10:03:00,536 | INFO     | monitor loop #8336: job 0:6893848030 is in state 'finished'
[2025-11-22 05:03:35] 2025-11-22 10:03:00,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 05:03:35] 2025-11-22 10:03:01,118 | INFO     | time since job start (128083s) is within the limit (172800.0s)
[2025-11-22 05:03:35] 2025-11-22 10:03:01,216 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-22 05:03:35] 2025-11-22 10:03:01,226 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.988250000001
[2025-11-22 05:03:35] 2025-11-22 10:03:01,238 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6893848030/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 05:03:35] 2025-11-22 10:03:01,239 | INFO     | extracted standard info from prmon json
[2025-11-22 05:03:35] 2025-11-22 10:03:01,239 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 05:03:35] 2025-11-22 10:03:01,239 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 05:03:35] 2025-11-22 10:03:01,300 | INFO     | fitting pss+swap vs Time
[2025-11-22 05:03:35] 2025-11-22 10:03:01,303 | INFO     | sum of square deviations: 2863366106529.7686
[2025-11-22 05:03:35] 2025-11-22 10:03:01,445 | INFO     | sum of deviations: 8707807196200.893
[2025-11-22 05:03:35] 2025-11-22 10:03:01,445 | INFO     | mean x: 1763741742.9895139
[2025-11-22 05:03:35] 2025-11-22 10:03:01,445 | INFO     | mean y: 2978242.2235462344
[2025-11-22 05:03:35] 2025-11-22 10:03:01,445 | INFO     | intersect: -5360751881.849683
[2025-11-22 05:03:35] 2025-11-22 10:03:01,452 | INFO     | chi2: 11.37379323681509
[2025-11-22 05:03:35] 2025-11-22 10:03:01,455 | INFO     | sum of square deviations: 2842942853441.1406
[2025-11-22 05:03:35] 2025-11-22 10:03:01,593 | INFO     | sum of deviations: 9418050054116.217
[2025-11-22 05:03:35] 2025-11-22 10:03:01,593 | INFO     | mean x: 1763741590.493072
[2025-11-22 05:03:35] 2025-11-22 10:03:01,594 | INFO     | mean y: 2983545.844720497
[2025-11-22 05:03:35] 2025-11-22 10:03:01,594 | INFO     | intersect: -5839907936.01679
[2025-11-22 05:03:35] 2025-11-22 10:03:01,596 | INFO     | chi2: 8.400272140400448
[2025-11-22 05:03:35] 2025-11-22 10:03:01,597 | INFO     | current chi2=8.400272140400448 (change=26.143618355834402 %)
[2025-11-22 05:03:35] 2025-11-22 10:03:01,599 | INFO     | sum of square deviations: 2822616951014.9795
[2025-11-22 05:03:35] 2025-11-22 10:03:01,719 | INFO     | sum of deviations: 9900778335914.5
[2025-11-22 05:03:35] 2025-11-22 10:03:01,720 | INFO     | mean x: 1763741437.9966476
[2025-11-22 05:03:35] 2025-11-22 10:03:01,720 | INFO     | mean y: 2987166.2164750956
[2025-11-22 05:03:35] 2025-11-22 10:03:01,720 | INFO     | intersect: -6183616727.447742
[2025-11-22 05:03:35] 2025-11-22 10:03:01,723 | INFO     | chi2: 6.763108929172886
[2025-11-22 05:03:35] 2025-11-22 10:03:01,723 | INFO     | current chi2=6.763108929172886 (change=19.4894068175929 %)
[2025-11-22 05:03:35] 2025-11-22 10:03:01,723 | INFO     | right removable region: 2087
[2025-11-22 05:03:35] 2025-11-22 10:03:01,726 | INFO     | sum of square deviations: 2842940947191.14
[2025-11-22 05:03:35] 2025-11-22 10:03:01,870 | INFO     | sum of deviations: 7859497004032.582
[2025-11-22 05:03:35] 2025-11-22 10:03:01,871 | INFO     | mean x: 1763741895.493072
[2025-11-22 05:03:35] 2025-11-22 10:03:01,871 | INFO     | mean y: 2984575.590539895
[2025-11-22 05:03:35] 2025-11-22 10:03:01,871 | INFO     | intersect: -4872995756.399998
[2025-11-22 05:03:35] 2025-11-22 10:03:01,874 | INFO     | chi2: 7.459275655854075
[2025-11-22 05:03:35] 2025-11-22 10:03:01,874 | INFO     | current chi2=7.459275655854075 (change=34.41699263786832 %)
[2025-11-22 05:03:35] 2025-11-22 10:03:01,877 | INFO     | sum of square deviations: 2822613521049.956
[2025-11-22 05:03:35] 2025-11-22 10:03:01,998 | INFO     | sum of deviations: 7449678221608.97
[2025-11-22 05:03:35] 2025-11-22 10:03:01,999 | INFO     | mean x: 1763742047.9952106
[2025-11-22 05:03:35] 2025-11-22 10:03:01,999 | INFO     | mean y: 2987648.1977969347
[2025-11-22 05:03:35] 2025-11-22 10:03:01,999 | INFO     | intersect: -4652028217.593975
[2025-11-22 05:03:35] 2025-11-22 10:03:02,002 | INFO     | chi2: 6.450283950288806
[2025-11-22 05:03:35] 2025-11-22 10:03:02,002 | INFO     | current chi2=6.450283950288806 (change=13.526671383613605 %)
[2025-11-22 05:03:35] 2025-11-22 10:03:02,002 | INFO     | left removable region: 20
[2025-11-22 05:03:35] 2025-11-22 10:03:02,005 | INFO     | sum of square deviations: 2738302029878.743
[2025-11-22 05:03:35] 2025-11-22 10:03:02,139 | INFO     | sum of deviations: 8419933391880.416
[2025-11-22 05:03:35] 2025-11-22 10:03:02,140 | INFO     | mean x: 1763742017.497823
[2025-11-22 05:03:35] 2025-11-22 10:03:02,140 | INFO     | mean y: 2999553.7614900824
[2025-11-22 05:03:35] 2025-11-22 10:03:02,140 | INFO     | intersect: -5420284709.899544
[2025-11-22 05:03:35] 2025-11-22 10:03:02,143 | INFO     | chi2: 1.5088774932605566
[2025-11-22 05:03:35] 2025-11-22 10:03:02,143 | INFO     | current memory leak: 3.07 B/s (using 2067 data points, chi2=1.51)
[2025-11-22 05:03:35] 2025-11-22 10:03:02,145 | INFO     | could have reported an average CPU frequency of 2899 MHz (73 samples)
[2025-11-22 05:03:35] 2025-11-22 10:03:02,145 | INFO     | ..............................
[2025-11-22 05:03:35] 2025-11-22 10:03:02,145 | INFO     | . Timing measurements:
[2025-11-22 05:03:35] 2025-11-22 10:03:02,145 | INFO     | . get job = 0 s
[2025-11-22 05:03:35] 2025-11-22 10:03:02,146 | INFO     | . initial setup = 7 s
[2025-11-22 05:03:35] 2025-11-22 10:03:02,146 | INFO     | . payload setup = 22 s
[2025-11-22 05:03:35] 2025-11-22 10:03:02,146 | INFO     | . stage-in = 0 s
[2025-11-22 05:03:35] 2025-11-22 10:03:02,146 | INFO     | . payload execution = 127993 s
[2025-11-22 05:03:35] 2025-11-22 10:03:02,146 | INFO     | . stage-out = 4 s
[2025-11-22 05:03:35] 2025-11-22 10:03:02,146 | INFO     | . log creation = 1 s
[2025-11-22 05:03:35] 2025-11-22 10:03:02,146 | INFO     | ..............................
[2025-11-22 05:03:35] 2025-11-22 10:03:02,366 | INFO     | 
[2025-11-22 05:03:35] 2025-11-22 10:03:02,366 | INFO     | job summary report
[2025-11-22 05:03:35] 2025-11-22 10:03:02,366 | INFO     | --------------------------------------------------
[2025-11-22 05:03:35] 2025-11-22 10:03:02,367 | INFO     | PanDA job id: 6893848030
[2025-11-22 05:03:35] 2025-11-22 10:03:02,367 | INFO     | task id: 47523449
[2025-11-22 05:03:35] 2025-11-22 10:03:02,367 | INFO     | errors: (none)
[2025-11-22 05:03:35] 2025-11-22 10:03:02,367 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 05:03:35] 2025-11-22 10:03:02,367 | INFO     | pilot state: finished 
[2025-11-22 05:03:35] 2025-11-22 10:03:02,367 | INFO     | transexitcode: 0
[2025-11-22 05:03:35] 2025-11-22 10:03:02,368 | INFO     | exeerrorcode: 0
[2025-11-22 05:03:35] 2025-11-22 10:03:02,368 | INFO     | exeerrordiag: 
[2025-11-22 05:03:35] 2025-11-22 10:03:02,368 | INFO     | exitcode: 0
[2025-11-22 05:03:35] 2025-11-22 10:03:02,368 | INFO     | exitmsg: OK
[2025-11-22 05:03:35] 2025-11-22 10:03:02,368 | INFO     | cpuconsumptiontime: 504619 s
[2025-11-22 05:03:35] 2025-11-22 10:03:02,368 | INFO     | nevents: 1000
[2025-11-22 05:03:35] 2025-11-22 10:03:02,369 | INFO     | neventsw: 0
[2025-11-22 05:03:35] 2025-11-22 10:03:02,369 | INFO     | pid: 3365207
[2025-11-22 05:03:35] 2025-11-22 10:03:02,369 | INFO     | pgrp: 3365207
[2025-11-22 05:03:35] 2025-11-22 10:03:02,369 | INFO     | corecount: 8
[2025-11-22 05:03:35] 2025-11-22 10:03:02,369 | INFO     | event service: False
[2025-11-22 05:03:35] 2025-11-22 10:03:02,369 | INFO     | sizes: {0: 2298580, 1: 2298636, 2: 2298863, 3: 2298891, 14: 2298891, 18: 2299181, 24: 2299337, 128019: 2385935, 128024: 2394929, 128027: 2394985, 128040: 2395231}
[2025-11-22 05:03:35] 2025-11-22 10:03:02,370 | INFO     | --------------------------------------------------
[2025-11-22 05:03:35] 2025-11-22 10:03:02,370 | INFO     | 
[2025-11-22 05:03:35] 2025-11-22 10:03:02,370 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 05:03:35] 2025-11-22 10:03:02,409 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,409 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,414 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,415 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,416 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,416 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,416 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,416 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,416 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 05:03:35] 2025-11-22 10:03:02,416 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,417 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 05:03:35] 2025-11-22 10:03:02,417 | INFO     | job 6893848030 has completed (purged errors)
[2025-11-22 05:03:35] 2025-11-22 10:03:02,417 | INFO     | overall cleanup function is called
[2025-11-22 05:03:35] 2025-11-22 10:03:03,436 | INFO     | --- collectZombieJob: --- 10, [3365207]
[2025-11-22 05:03:35] 2025-11-22 10:03:03,436 | INFO     | zombie collector waiting for pid 3365207
[2025-11-22 05:03:35] 2025-11-22 10:03:03,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 05:03:35] 2025-11-22 10:03:03,436 | INFO     | collected zombie processes
[2025-11-22 05:03:35] 2025-11-22 10:03:03,437 | INFO     | will attempt to kill all subprocesses of pid=3365207
[2025-11-22 05:03:35] 2025-11-22 10:03:03,797 | INFO     | process IDs to be killed: [3365207] (in reverse order)
[2025-11-22 05:03:35] 2025-11-22 10:03:03,899 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 05:03:35] 2025-11-22 10:03:03,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 05:03:35] 2025-11-22 10:03:03,914 | INFO     | did not find any defunct processes belonging to 3365207
[2025-11-22 05:03:35] 2025-11-22 10:03:03,932 | INFO     | did not find any defunct processes belonging to 3365207
[2025-11-22 05:03:35] 2025-11-22 10:03:03,934 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 05:03:35] 2025-11-22 10:03:03,934 | INFO     | ready for new job
[2025-11-22 05:03:35] 2025-11-22 10:03:03,934 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 05:03:35] 2025-11-22 10:03:03,948 | INFO     | ***************************************
[2025-11-22 05:03:35] 2025-11-22 10:03:03,948 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 05:03:35] 2025-11-22 10:03:03,948 | INFO     | ***************************************
[2025-11-22 05:03:35] 2025-11-22 10:03:03,948 | INFO     | 
[2025-11-22 05:03:35] 2025-11-22 10:03:03,950 | INFO     | architecture information:
[2025-11-22 05:03:35] 2025-11-22 10:03:03,952 | INFO     | executing command: cat /etc/os-release
[2025-11-22 05:03:35] 2025-11-22 10:03:03,987 | INFO     | cat /etc/os-release:
[2025-11-22 05:03:35] NAME="CentOS Linux"
[2025-11-22 05:03:35] VERSION="7 (Core)"
[2025-11-22 05:03:35] ID="centos"
[2025-11-22 05:03:35] ID_LIKE="rhel fedora"
[2025-11-22 05:03:35] VERSION_ID="7"
[2025-11-22 05:03:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 05:03:35] ANSI_COLOR="0;31"
[2025-11-22 05:03:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 05:03:35] HOME_URL="https://www.centos.org/"
[2025-11-22 05:03:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 05:03:35] 
[2025-11-22 05:03:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 05:03:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 05:03:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 05:03:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 05:03:35] 
[2025-11-22 05:03:35] 2025-11-22 10:03:03,988 | INFO     | ***************************************
[2025-11-22 05:03:35] 2025-11-22 10:03:04,490 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 05:03:35] 2025-11-22 10:03:04,512 | INFO     | sufficient remaining disk space (48787095552 B)
[2025-11-22 05:03:35] 2025-11-22 10:03:04,512 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 05:03:35] 2025-11-22 10:03:04,512 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 05:03:35] 2025-11-22 10:03:04,513 | INFO     | update_server=False
[2025-11-22 05:03:35] 2025-11-22 10:03:04,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 05:03:35] 2025-11-22 10:03:04,514 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 05:03:35] 2025-11-22 10:03:04,514 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:03:35] 2025-11-22 10:03:04,514 | INFO     | aborting loop
[2025-11-22 05:03:35] 2025-11-22 10:03:04,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 05:03:35] 2025-11-22 10:03:05,504 | INFO     | all data control threads have been joined
[2025-11-22 05:03:35] 2025-11-22 10:03:05,519 | INFO     | [job] retrieve thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:05,519 | INFO     | [job] job monitor thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:05,608 | INFO     | all job control threads have been joined
[2025-11-22 05:03:35] 2025-11-22 10:03:05,810 | INFO     | all payload control threads have been joined
[2025-11-22 05:03:35] 2025-11-22 10:03:06,134 | INFO     | [payload] failed_post thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,333 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,406 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,515 | INFO     | [data] control thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,528 | INFO     | [data] copytool_out thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,561 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,561 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,569 | INFO     | [data] copytool_in thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,616 | INFO     | [job] control thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,646 | INFO     | [job] validate thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,726 | INFO     | [payload] validate_post thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:06,816 | INFO     | [payload] control thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:07,326 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 05:03:35] 2025-11-22 10:03:08,332 | INFO     | [job] queue monitor thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:08,522 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 05:03:35] 2025-11-22 10:03:09,753 | INFO     | [monitor] cgroup control has ended
[2025-11-22 05:03:35] 2025-11-22 10:03:10,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139821639063360)>', '<ExcThread(monitor, started 139820747699968)>']
[2025-11-22 05:03:35] 2025-11-22 10:03:15,264 | INFO     | all workflow threads have been joined
[2025-11-22 05:03:35] 2025-11-22 10:03:15,264 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 05:03:35] 2025-11-22 10:03:15,266 | INFO     | traces error code: 0
[2025-11-22 05:03:35] 2025-11-22 10:03:15,267 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 05:03:35] 2025-11-22 10:03:34,617 | INFO     | PID=3356022 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 05:03:35] 2025-11-22 10:03:34,617 | INFO     | .. there are 9 such processes running
[2025-11-22 05:03:35] 2025-11-22 10:03:34,619 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 05:03:35] 2025-11-22 10:03:34,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 05:03:35] 2025-11-22 10:03:34,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 05:03:35] 2025-11-22 10:03:34,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 05:03:35] 2025-11-22 10:03:34,619 | INFO     | [monitor] control thread has ended
[2025-11-22 05:03:35] 2025-11-22 10:03:34,736 [wrapper] ==== pilot stdout END ====
[2025-11-22 05:03:35] 2025-11-22 10:03:34,743 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 05:03:35] 2025-11-22 10:03:34,751 [wrapper] pilotpid: 3356022
[2025-11-22 05:03:35] 2025-11-22 10:03:34,789 [wrapper] Pilot exit status: 0
[2025-11-22 05:03:35] 2025-11-22 10:03:34,827 [wrapper] pandaids: 6893848030
[2025-11-22 05:03:35] 2025-11-22 10:03:34,949 [wrapper] cleanup supervisor_pilot 1957721 3356023
[2025-11-22 05:03:35] 2025-11-22 10:03:34,958 [wrapper] Test setup, not cleaning
[2025-11-22 05:03:35] 2025-11-22 10:03:34,963 [wrapper] apfmon messages muted
[2025-11-22 05:03:35] 2025-11-22 10:03:34,972 [wrapper] ==== wrapper stdout END ====
[2025-11-22 05:03:35] 2025-11-22 10:03:34,979 [wrapper] ==== wrapper stderr END ====
[2025-11-22 05:03:35]  *** Error codes and diagnostics ***
[2025-11-22 05:03:35]     "exeErrorCode": 0,
[2025-11-22 05:03:35]     "exeErrorDiag": "",
[2025-11-22 05:03:35]     "pilotErrorCode": 0,
[2025-11-22 05:03:35]     "pilotErrorDiag": "",
[2025-11-22 05:03:35]  *** Listing of results directory ***
[2025-11-22 05:03:35] total 1349224
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-22 05:03:35] -rwx------. 1 boincer umatlas     36292 Nov 20 05:27 runpilot2-wrapper.sh
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:27 queuedata.json
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas       100 Nov 20 17:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 05:03:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 17:27 run_atlas
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas       105 Nov 20 17:27 job.xml
[2025-11-22 05:03:35] -rw-r--r--. 2 boincer umatlas 408817498 Nov 20 17:27 EVNT.47493127._000254.pool.root.1
[2025-11-22 05:03:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 17:27 start_atlas.sh
[2025-11-22 05:03:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 17:27 shared
[2025-11-22 05:03:35] -rw-r--r--. 2 boincer umatlas    590103 Nov 20 17:27 input.tar.gz
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas         0 Nov 20 17:27 boinc_lockfile
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 20 17:27 pandaJob.out
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas        57 Nov 20 17:27 setup.sh.local
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas    989825 Nov 20 17:28 agis_schedconf.cvmfs.json
[2025-11-22 05:03:35] drwx------. 5 boincer umatlas      4096 Nov 20 17:28 pilot3
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas       534 Nov 22 04:43 boinc_task_state.xml
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas 928929368 Nov 22 05:02 HITS.47523449._002538.pool.root.1
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas      1054 Nov 22 05:02 memory_monitor_summary.json
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas   1526164 Nov 22 05:02 agis_ddmendpoints.agis.ALL.json
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas   2997153 Nov 22 05:02 log.47523449._002538.job.log.tgz.1
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas      8617 Nov 22 05:03 heartbeat.json
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas      6526 Nov 22 05:03 init_data.xml
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas        30 Nov 22 05:03 wrapper_checkpoint.txt
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 05:03 boinc_mmap_file
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas        95 Nov 22 05:03 pilot_heartbeat.json
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas       822 Nov 22 05:03 pilotlog.txt
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas  16975326 Nov 22 05:03 log.47523449._002538.job.log.1
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas       353 Nov 22 05:03 output.list
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas       620 Nov 22 05:03 runtime_log
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas  19988480 Nov 22 05:03 result.tar.gz
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas       663 Nov 22 05:03 Xv8KDmp3Gg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2THKDmmFHdym.diag
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas      9344 Nov 22 05:03 runtime_log.err
[2025-11-22 05:03:35] -rw-r--r--. 1 boincer umatlas     21369 Nov 22 05:03 stderr.txt
[2025-11-22 05:03:35] HITS file was successfully produced:
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas 928929368 Nov 22 05:02 shared/HITS.pool.root.1
[2025-11-22 05:03:35]  *** Contents of shared directory: ***
[2025-11-22 05:03:35] total 1326516
[2025-11-22 05:03:35] -rw-r--r--. 2 boincer umatlas 408817498 Nov 20 17:27 ATLAS.root_0
[2025-11-22 05:03:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 17:27 start_atlas.sh
[2025-11-22 05:03:35] -rw-r--r--. 2 boincer umatlas    590103 Nov 20 17:27 input.tar.gz
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas 928929368 Nov 22 05:02 HITS.pool.root.1
[2025-11-22 05:03:35] -rw-------. 1 boincer umatlas  19988480 Nov 22 05:03 result.tar.gz
05:03:36 (3351985): run_atlas exited; CPU time 507344.755602
05:03:36 (3351985): called boinc_finish(0)

</stderr_txt>
]]>

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