Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:13:32 (683443): wrapper (7.7.26015): starting
16:13:32 (683443): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 16:13:32] Arguments: --nthreads 3
[2025-11-20 16:13:32] Threads: 3
[2025-11-20 16:13:32] Checking for CVMFS
[2025-11-20 16:13:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 16:13:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 16:13:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 16:13:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 16:13:33] 2.9.2.0 16720 140 62568 153084 3 88 34394890 36864000 0 130560 0 2004548 99.999 5517 7938 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 16:13:33] CVMFS is ok
[2025-11-20 16:13:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 16:13:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 16:13:33] Further information can be found at the LHC@home message board.
[2025-11-20 16:13:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 16:13:33] Checking for apptainer binary...
[2025-11-20 16:13:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 16:13:33] Running /usr/bin/apptainer --version
[2025-11-20 16:13:33] apptainer version 1.4.1-1.1
[2025-11-20 16:13:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 16:13:33] thA335
[2025-11-20 16:13:33] apptainer works
[2025-11-20 16:13:33] Set ATHENA_PROC_NUMBER=3
[2025-11-20 16:13:33] Set ATHENA_CORE_NUMBER=3
[2025-11-20 16:13:33] Starting ATLAS job with PandaID=6893841458
[2025-11-20 16:13:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 16:17:53]  *** The last 200 lines of the pilot log: ***
[2025-11-20 16:17:53] 2025-11-20 15:17:02,942 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-20 16:17:53] 2025-11-20 15:17:02,942 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 16:17:53] 2025-11-20 15:17:02,942 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 16:17:53] 2025-11-20 15:17:02,942 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 16:17:53] 2025-11-20 15:17:02,968 | INFO     | all data control threads have been joined
[2025-11-20 16:17:53] 2025-11-20 15:17:03,072 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 16:17:53] 2025-11-20 15:17:03,072 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 16:17:53] 2025-11-20 15:17:03,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 16:17:53] 2025-11-20 15:17:03,073 | INFO     | will abort loop
[2025-11-20 16:17:53] 2025-11-20 15:17:03,322 | INFO     | all job control threads have been joined
[2025-11-20 16:17:53] 2025-11-20 15:17:03,947 | INFO     | [job] queue monitor thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:03,948 | INFO     | [job] retrieve thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:03,974 | INFO     | [data] control thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:03,984 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:04,079 | INFO     | [job] job monitor thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:04,099 | INFO     | all payload control threads have been joined
[2025-11-20 16:17:53] 2025-11-20 15:17:04,161 | INFO     | [payload] failed_post thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:04,328 | INFO     | [job] control thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:04,869 | INFO     | [payload] validate_post thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:04,948 | INFO     | [data] copytool_out thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:05,043 | INFO     | [data] copytool_in thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:05,058 | INFO     | [job] validate thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:05,105 | INFO     | [payload] control thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:05,118 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:05,202 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:05,281 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:06,948 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 16:17:53] 2025-11-20 15:17:45,374 | INFO     | [monitor] cgroup control has ended
[2025-11-20 16:17:53] 2025-11-20 15:17:46,895 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140036597589824)>', '<ExcThread(monitor, started 140035596744448)>']
[2025-11-20 16:17:53] 2025-11-20 15:17:47,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 16:17:53] 2025-11-20 15:17:47,178 | INFO     | [monitor] control thread has ended
[2025-11-20 16:17:53] 2025-11-20 15:17:51,922 | INFO     | all workflow threads have been joined
[2025-11-20 16:17:53] 2025-11-20 15:17:51,924 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 16:17:53] 2025-11-20 15:17:51,924 | INFO     | traces error code: 0
[2025-11-20 16:17:53] 2025-11-20 15:17:51,925 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 16:17:53] 2025-11-20 15:17:51,972 [wrapper] ==== pilot stdout END ====
[2025-11-20 16:17:53] 2025-11-20 15:17:51,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 16:17:53] 2025-11-20 15:17:51,978 [wrapper] pilotpid: 687177
[2025-11-20 16:17:53] 2025-11-20 15:17:51,981 [wrapper] Pilot exit status: 0
[2025-11-20 16:17:53] 2025-11-20 15:17:51,987 [wrapper] pandaids: 6893841458
[2025-11-20 16:17:53] 2025-11-20 15:17:52,004 [wrapper] cleanup supervisor_pilot  687183 687178
[2025-11-20 16:17:53] 2025-11-20 15:17:52,006 [wrapper] Test setup, not cleaning
[2025-11-20 16:17:53] 2025-11-20 15:17:52,009 [wrapper] apfmon messages muted
[2025-11-20 16:17:53] 2025-11-20 15:17:52,011 [wrapper] ==== wrapper stdout END ====
[2025-11-20 16:17:53] 2025-11-20 15:17:52,014 [wrapper] ==== wrapper stderr END ====
[2025-11-20 16:17:53]  *** Error codes and diagnostics ***
[2025-11-20 16:17:53]     "exeErrorCode": 65,
[2025-11-20 16:17:53]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 16:17:53]     "pilotErrorCode": 1305,
[2025-11-20 16:17:53]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 16:17:53]  *** Listing of results directory ***
[2025-11-20 16:17:53] total 405320
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 16:17:53] -rwx------ 1 boinc boinc     36292 Nov 20 11:21 runpilot2-wrapper.sh
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc       100 Nov 20 16:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 16:17:53] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 16:13 run_atlas
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc       105 Nov 20 16:13 job.xml
[2025-11-20 16:17:53] -rw-r--r-- 2 boinc boinc 410844944 Nov 20 16:13 EVNT.47493127._000179.pool.root.1
[2025-11-20 16:17:53] -rw-r--r-- 2 boinc boinc    590098 Nov 20 16:13 input.tar.gz
[2025-11-20 16:17:53] -rw-r--r-- 2 boinc boinc     15847 Nov 20 16:13 start_atlas.sh
[2025-11-20 16:17:53] drwxrwx--x 2 boinc boinc      4096 Nov 20 16:13 shared
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc         0 Nov 20 16:13 boinc_setup_complete
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc      6194 Nov 20 16:13 init_data.xml
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc         0 Nov 20 16:13 boinc_lockfile
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc      2786 Nov 20 16:13 pandaJob.out
[2025-11-20 16:17:53] -rw------- 1 boinc boinc    989440 Nov 20 16:13 agis_schedconf.cvmfs.json
[2025-11-20 16:17:53] -rw------- 1 boinc boinc   1526164 Nov 20 16:13 agis_ddmendpoints.agis.ALL.json
[2025-11-20 16:17:53] drwx------ 5 boinc boinc      4096 Nov 20 16:13 pilot3
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc       523 Nov 20 16:14 boinc_task_state.xml
[2025-11-20 16:17:53] -rw------- 1 boinc boinc       954 Nov 20 16:14 memory_monitor_summary.json
[2025-11-20 16:17:53] -rw------- 1 boinc boinc     56149 Nov 20 16:14 log.47523449._001788.job.log.tgz.1
[2025-11-20 16:17:53] -rw------- 1 boinc boinc        95 Nov 20 16:16 pilot_heartbeat.json
[2025-11-20 16:17:53] -rw------- 1 boinc boinc      8403 Nov 20 16:17 heartbeat.json
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc      8192 Nov 20 16:17 boinc_mmap_file
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc        23 Nov 20 16:17 wrapper_checkpoint.txt
[2025-11-20 16:17:53] -rw------- 1 boinc boinc      4742 Nov 20 16:17 pilotlog.txt
[2025-11-20 16:17:53] -rw------- 1 boinc boinc     93701 Nov 20 16:17 log.47523449._001788.job.log.1
[2025-11-20 16:17:53] -rw------- 1 boinc boinc       186 Nov 20 16:17 output.list
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc       620 Nov 20 16:17 runtime_log
[2025-11-20 16:17:53] -rw------- 1 boinc boinc    174080 Nov 20 16:17 result.tar.gz
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc      8744 Nov 20 16:17 runtime_log.err
[2025-11-20 16:17:53] -rw------- 1 boinc boinc       649 Nov 20 16:17 RoKLDmqxGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsPGKDmaecDpm.diag
[2025-11-20 16:17:53] -rw-r--r-- 1 boinc boinc      7323 Nov 20 16:17 stderr.txt
[2025-11-20 16:17:53] No HITS result produced
[2025-11-20 16:17:53]  *** Contents of shared directory: ***
[2025-11-20 16:17:53] total 401988
[2025-11-20 16:17:53] -rw-r--r-- 2 boinc boinc 410844944 Nov 20 16:13 ATLAS.root_0
[2025-11-20 16:17:53] -rw-r--r-- 2 boinc boinc    590098 Nov 20 16:13 input.tar.gz
[2025-11-20 16:17:53] -rw-r--r-- 2 boinc boinc     15847 Nov 20 16:13 start_atlas.sh
[2025-11-20 16:17:53] -rw------- 1 boinc boinc    174080 Nov 20 16:17 result.tar.gz
16:17:54 (683443): run_atlas exited; CPU time 32.137798
16:17:54 (683443): called boinc_finish(0)

</stderr_txt>
]]>

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