Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:55:03 (3602): wrapper (7.7.26015): starting
16:55:03 (3602): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 16:55:03] Arguments: --nthreads 8
[2025-11-22 16:55:03] Threads: 8
[2025-11-22 16:55:03] Checking for CVMFS
[2025-11-22 16:55:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 16:55:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 16:55:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 16:55:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 16:55:06] 2.11.2.0 28532 279750 139488 153176 3 236 15891774 25165824 4632 130560 9 124593897 99.874 74314774 3126 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 16:55:06] CVMFS is ok
[2025-11-22 16:55:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 16:55:06] Checking for apptainer binary...
[2025-11-22 16:55:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 16:55:06] Running /usr/bin/apptainer --version
[2025-11-22 16:55:06] apptainer version 1.3.2-1.el7
[2025-11-22 16:55:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 16:55:18] cg-vwn472.simple-grid.lan
[2025-11-22 16:55:18] apptainer works
[2025-11-22 16:55:18] Set ATHENA_PROC_NUMBER=8
[2025-11-22 16:55:18] Set ATHENA_CORE_NUMBER=8
[2025-11-22 16:55:18] Starting ATLAS job with PandaID=6893842519
[2025-11-22 16:55:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 16:08:59]  *** The last 200 lines of the pilot log: ***
[2025-11-23 16:08:59] 2025-11-23 15:08:13,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:08:59] 2025-11-23 15:08:14,647 | INFO     | time since job start (83332s) is within the limit (172800.0s)
[2025-11-23 16:08:59] 2025-11-23 15:08:15,529 | INFO     | monitor loop #5646: job 0:6893842519 is in state 'finished'
[2025-11-23 16:08:59] 2025-11-23 15:08:15,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:08:59] 2025-11-23 15:08:16,653 | INFO     | time since job start (83334s) is within the limit (172800.0s)
[2025-11-23 16:08:59] 2025-11-23 15:08:18,034 | INFO     | monitor loop #5647: job 0:6893842519 is in state 'finished'
[2025-11-23 16:08:59] 2025-11-23 15:08:18,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:08:59] 2025-11-23 15:08:18,664 | INFO     | time since job start (83336s) is within the limit (172800.0s)
[2025-11-23 16:08:59] 2025-11-23 15:08:19,874 | INFO     | PID=7386 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 16:08:59] 2025-11-23 15:08:19,874 | INFO     | .. there are 9 such processes running
[2025-11-23 16:08:59] 2025-11-23 15:08:20,541 | INFO     | monitor loop #5648: job 0:6893842519 is in state 'finished'
[2025-11-23 16:08:59] 2025-11-23 15:08:20,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:08:59] 2025-11-23 15:08:20,878 | INFO     | time since job start (83338s) is within the limit (172800.0s)
[2025-11-23 16:08:59] 2025-11-23 15:08:22,888 | INFO     | time since job start (83340s) is within the limit (172800.0s)
[2025-11-23 16:08:59] 2025-11-23 15:08:23,048 | INFO     | monitor loop #5649: job 0:6893842519 is in state 'finished'
[2025-11-23 16:08:59] 2025-11-23 15:08:23,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 16:08:59] 2025-11-23 15:08:23,447 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 16:08:59] 2025-11-23 15:08:23,448 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-23 16:08:59] 2025-11-23 15:08:23,450 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893842519/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 16:08:59] 2025-11-23 15:08:23,451 | INFO     | extracted standard info from prmon json
[2025-11-23 16:08:59] 2025-11-23 15:08:23,451 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 16:08:59] 2025-11-23 15:08:23,451 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 16:08:59] 2025-11-23 15:08:23,492 | INFO     | fitting pss+swap vs Time
[2025-11-23 16:08:59] 2025-11-23 15:08:23,495 | INFO     | sum of square deviations: 773140217986.5858
[2025-11-23 16:08:59] 2025-11-23 15:08:23,565 | INFO     | sum of deviations: 3623725001226.6562
[2025-11-23 16:08:59] 2025-11-23 15:08:23,565 | INFO     | mean x: 1763869006.7278762
[2025-11-23 16:08:59] 2025-11-23 15:08:23,565 | INFO     | mean y: 2836935.7470501475
[2025-11-23 16:08:59] 2025-11-23 15:08:23,565 | INFO     | intersect: -8264455425.804283
[2025-11-23 16:08:59] 2025-11-23 15:08:23,567 | INFO     | chi2: 24.163460566703954
[2025-11-23 16:08:59] 2025-11-23 15:08:23,573 | INFO     | sum of square deviations: 764619803249.0208
[2025-11-23 16:08:59] 2025-11-23 15:08:23,619 | INFO     | sum of deviations: 4069322716733.968
[2025-11-23 16:08:59] 2025-11-23 15:08:23,620 | INFO     | mean x: 1763868854.2324204
[2025-11-23 16:08:59] 2025-11-23 15:08:23,620 | INFO     | mean y: 2844909.9459659513
[2025-11-23 16:08:59] 2025-11-23 15:08:23,620 | INFO     | intersect: -9384502327.684837
[2025-11-23 16:08:59] 2025-11-23 15:08:23,622 | INFO     | chi2: 21.054047576958613
[2025-11-23 16:08:59] 2025-11-23 15:08:23,622 | INFO     | current chi2=21.054047576958613 (change=12.868243690351031 %)
[2025-11-23 16:08:59] 2025-11-23 15:08:23,622 | INFO     | right removable region: 1350
[2025-11-23 16:08:59] 2025-11-23 15:08:23,624 | INFO     | sum of square deviations: 764618787599.02
[2025-11-23 16:08:59] 2025-11-23 15:08:23,685 | INFO     | sum of deviations: 3052000918878.3994
[2025-11-23 16:08:59] 2025-11-23 15:08:23,685 | INFO     | mean x: 1763869159.2324204
[2025-11-23 16:08:59] 2025-11-23 15:08:23,686 | INFO     | mean y: 2847167.1006661733
[2025-11-23 16:08:59] 2025-11-23 15:08:23,686 | INFO     | intersect: -7037694318.497427
[2025-11-23 16:08:59] 2025-11-23 15:08:23,691 | INFO     | chi2: 19.26473562587562
[2025-11-23 16:08:59] 2025-11-23 15:08:23,692 | INFO     | current chi2=19.26473562587562 (change=20.273275540584336 %)
[2025-11-23 16:08:59] 2025-11-23 15:08:23,692 | INFO     | left removable region: 10
[2025-11-23 16:08:59] 2025-11-23 15:08:23,694 | INFO     | sum of square deviations: 746093723202.175
[2025-11-23 16:08:59] 2025-11-23 15:08:23,762 | INFO     | sum of deviations: 3067980598008.0747
[2025-11-23 16:08:59] 2025-11-23 15:08:23,763 | INFO     | mean x: 1763869128.7425373
[2025-11-23 16:08:59] 2025-11-23 15:08:23,763 | INFO     | mean y: 2866628.832089552
[2025-11-23 16:08:59] 2025-11-23 15:08:23,763 | INFO     | intersect: -7250265378.741589
[2025-11-23 16:08:59] 2025-11-23 15:08:23,765 | INFO     | chi2: 11.26327102962783
[2025-11-23 16:08:59] 2025-11-23 15:08:23,765 | INFO     | current memory leak: 4.11 B/s (using 1340 data points, chi2=11.26)
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | ..............................
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | . Timing measurements:
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | . get job = 0 s
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | . initial setup = 6 s
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | . payload setup = 152 s
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | . stage-in = 0 s
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | . payload execution = 82882 s
[2025-11-23 16:08:59] 2025-11-23 15:08:23,768 | INFO     | . stage-out = 5 s
[2025-11-23 16:08:59] 2025-11-23 15:08:23,769 | INFO     | . log creation = 2 s
[2025-11-23 16:08:59] 2025-11-23 15:08:23,769 | INFO     | ..............................
[2025-11-23 16:08:59] 2025-11-23 15:08:23,927 | INFO     | 
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | job summary report
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | --------------------------------------------------
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | PanDA job id: 6893842519
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | task id: 47523449
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | errors: (none)
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | pilot state: finished 
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | transexitcode: 0
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | exeerrorcode: 0
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | exeerrordiag: 
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | exitcode: 0
[2025-11-23 16:08:59] 2025-11-23 15:08:23,928 | INFO     | exitmsg: OK
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | cpuconsumptiontime: 304700 s
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | nevents: 1000
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | neventsw: 0
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | pid: 13959
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | pgrp: 13959
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | corecount: 8
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | event service: False
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298863, 12: 2298863, 23: 2298891, 34: 2298919, 45: 2299075, 55: 2299103, 66: 2299131, 77: 2299159, 87: 2299215, 97: 2299785, 98
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | --------------------------------------------------
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | 
[2025-11-23 16:08:59] 2025-11-23 15:08:23,929 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-23 16:08:59] 2025-11-23 15:08:24,488 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,488 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,488 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,488 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,488 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,488 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,490 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 16:08:59] 2025-11-23 15:08:24,490 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,490 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 16:08:59] 2025-11-23 15:08:24,490 | INFO     | job 6893842519 has completed (purged errors)
[2025-11-23 16:08:59] 2025-11-23 15:08:24,490 | INFO     | overall cleanup function is called
[2025-11-23 16:08:59] 2025-11-23 15:08:25,514 | INFO     | --- collectZombieJob: --- 10, [13959]
[2025-11-23 16:08:59] 2025-11-23 15:08:25,514 | INFO     | zombie collector waiting for pid 13959
[2025-11-23 16:08:59] 2025-11-23 15:08:25,515 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 16:08:59] 2025-11-23 15:08:25,515 | INFO     | collected zombie processes
[2025-11-23 16:08:59] 2025-11-23 15:08:25,515 | INFO     | will attempt to kill all subprocesses of pid=13959
[2025-11-23 16:08:59] 2025-11-23 15:08:25,656 | INFO     | process IDs to be killed: [13959] (in reverse order)
[2025-11-23 16:08:59] 2025-11-23 15:08:26,621 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 16:08:59] 2025-11-23 15:08:26,621 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 16:08:59] 2025-11-23 15:08:26,625 | INFO     | did not find any defunct processes belonging to 13959
[2025-11-23 16:08:59] 2025-11-23 15:08:26,628 | INFO     | did not find any defunct processes belonging to 13959
[2025-11-23 16:08:59] 2025-11-23 15:08:26,700 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 16:08:59] 2025-11-23 15:08:26,701 | INFO     | ready for new job
[2025-11-23 16:08:59] 2025-11-23 15:08:26,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 16:08:59] 2025-11-23 15:08:26,707 | INFO     | ***************************************
[2025-11-23 16:08:59] 2025-11-23 15:08:26,707 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 16:08:59] 2025-11-23 15:08:26,707 | INFO     | ***************************************
[2025-11-23 16:08:59] 2025-11-23 15:08:26,707 | INFO     | 
[2025-11-23 16:08:59] 2025-11-23 15:08:26,708 | INFO     | pilot is running in a VM
[2025-11-23 16:08:59] 2025-11-23 15:08:26,708 | INFO     | architecture information:
[2025-11-23 16:08:59] 2025-11-23 15:08:26,716 | INFO     | executing command: cat /etc/os-release
[2025-11-23 16:08:59] 2025-11-23 15:08:26,854 | INFO     | cat /etc/os-release:
[2025-11-23 16:08:59] NAME="CentOS Linux"
[2025-11-23 16:08:59] VERSION="7 (Core)"
[2025-11-23 16:08:59] ID="centos"
[2025-11-23 16:08:59] ID_LIKE="rhel fedora"
[2025-11-23 16:08:59] VERSION_ID="7"
[2025-11-23 16:08:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 16:08:59] ANSI_COLOR="0;31"
[2025-11-23 16:08:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 16:08:59] HOME_URL="https://www.centos.org/"
[2025-11-23 16:08:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 16:08:59] 
[2025-11-23 16:08:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 16:08:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 16:08:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 16:08:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 16:08:59] 
[2025-11-23 16:08:59] 2025-11-23 15:08:26,855 | INFO     | ***************************************
[2025-11-23 16:08:59] 2025-11-23 15:08:27,358 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-23 16:08:59] 2025-11-23 15:08:27,535 | INFO     | sufficient remaining disk space (495187918848 B)
[2025-11-23 16:08:59] 2025-11-23 15:08:27,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 16:08:59] 2025-11-23 15:08:27,535 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 16:08:59] 2025-11-23 15:08:27,536 | INFO     | update_server=False
[2025-11-23 16:08:59] 2025-11-23 15:08:27,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 16:08:59] 2025-11-23 15:08:27,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:08:59] 2025-11-23 15:08:27,539 | INFO     | aborting loop
[2025-11-23 16:08:59] 2025-11-23 15:08:27,700 | INFO     | all data control threads have been joined
[2025-11-23 16:08:59] 2025-11-23 15:08:28,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 16:08:59] 2025-11-23 15:08:28,282 | INFO     | all payload control threads have been joined
[2025-11-23 16:08:59] 2025-11-23 15:08:28,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 16:08:59] 2025-11-23 15:08:28,541 | INFO     | [job] retrieve thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:28,545 | INFO     | [job] job monitor thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:28,706 | INFO     | [data] control thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:28,884 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:28,953 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 16:08:59] 2025-11-23 15:08:28,955 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:29,082 | INFO     | all job control threads have been joined
[2025-11-23 16:08:59] 2025-11-23 15:08:29,254 | INFO     | [job] validate thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:29,288 | INFO     | [payload] control thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:29,298 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:29,448 | INFO     | [data] copytool_in thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:29,853 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:29,897 | INFO     | [payload] failed_post thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:29,959 | INFO     | [job] queue monitor thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:30,088 | INFO     | [job] control thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:30,133 | INFO     | [payload] validate_post thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:30,421 | INFO     | [data] copytool_out thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:32,043 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 16:08:59] 2025-11-23 15:08:47,535 | INFO     | [monitor] cgroup control has ended
[2025-11-23 16:08:59] 2025-11-23 15:08:48,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140667156383552)>', '<ExcThread(monitor, started 140666705254144)>']
[2025-11-23 16:08:59] 2025-11-23 15:08:53,438 | INFO     | all workflow threads have been joined
[2025-11-23 16:08:59] 2025-11-23 15:08:53,439 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 16:08:59] 2025-11-23 15:08:53,439 | INFO     | traces error code: 0
[2025-11-23 16:08:59] 2025-11-23 15:08:53,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 16:08:59] 2025-11-23 15:08:56,093 | INFO     | PID=7386 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 16:08:59] 2025-11-23 15:08:56,093 | INFO     | .. there are 9 such processes running
[2025-11-23 16:08:59] 2025-11-23 15:08:56,094 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 16:08:59] 2025-11-23 15:08:56,094 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 16:08:59] 2025-11-23 15:08:56,094 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 16:08:59] 2025-11-23 15:08:56,094 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 16:08:59] 2025-11-23 15:08:56,094 | INFO     | [monitor] control thread has ended
[2025-11-23 16:08:59] 2025-11-23 15:08:56,530 [wrapper] ==== pilot stdout END ====
[2025-11-23 16:08:59] 2025-11-23 15:08:56,614 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 16:08:59] 2025-11-23 15:08:56,697 [wrapper] pilotpid: 7386
[2025-11-23 16:08:59] 2025-11-23 15:08:56,773 [wrapper] Pilot exit status: 0
[2025-11-23 16:08:59] 2025-11-23 15:08:57,043 [wrapper] pandaids: 6893842519
[2025-11-23 16:08:59] 2025-11-23 15:08:57,712 [wrapper] cleanup supervisor_pilot 23956 7387
[2025-11-23 16:08:59] 2025-11-23 15:08:57,812 [wrapper] Test setup, not cleaning
[2025-11-23 16:08:59] 2025-11-23 15:08:57,905 [wrapper] apfmon messages muted
[2025-11-23 16:08:59] 2025-11-23 15:08:57,956 [wrapper] ==== wrapper stdout END ====
[2025-11-23 16:08:59] 2025-11-23 15:08:58,056 [wrapper] ==== wrapper stderr END ====
[2025-11-23 16:08:59]  *** Error codes and diagnostics ***
[2025-11-23 16:08:59]     "exeErrorCode": 0,
[2025-11-23 16:08:59]     "exeErrorDiag": "",
[2025-11-23 16:08:59]     "pilotErrorCode": 0,
[2025-11-23 16:08:59]     "pilotErrorDiag": "",
[2025-11-23 16:08:59]  *** Listing of results directory ***
[2025-11-23 16:08:59] total 1330392
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-23 16:08:59] -rwx------. 1 boinc boinc     36292 Nov 20 11:21 runpilot2-wrapper.sh
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc       100 Nov 22 16:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 16:08:59] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 16:55 run_atlas
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc       105 Nov 22 16:55 job.xml
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc      6392 Nov 22 16:55 init_data.xml
[2025-11-23 16:08:59] -rw-r--r--. 2 boinc boinc 408869196 Nov 22 16:55 EVNT.47493127._000196.pool.root.1
[2025-11-23 16:08:59] -rw-r--r--. 2 boinc boinc     15847 Nov 22 16:55 start_atlas.sh
[2025-11-23 16:08:59] drwxrwx--x. 2 boinc boinc        68 Nov 22 16:55 shared
[2025-11-23 16:08:59] -rw-r--r--. 2 boinc boinc    590103 Nov 22 16:55 input.tar.gz
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc         0 Nov 22 16:55 boinc_lockfile
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc      2786 Nov 22 16:55 pandaJob.out
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc    989768 Nov 22 16:59 agis_schedconf.cvmfs.json
[2025-11-23 16:08:59] drwx------. 5 boinc boinc      4096 Nov 22 16:59 pilot3
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc       533 Nov 23 15:43 boinc_task_state.xml
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc 922281522 Nov 23 16:05 HITS.47523449._001955.pool.root.1
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc      1030 Nov 23 16:06 memory_monitor_summary.json
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc   1526164 Nov 23 16:06 agis_ddmendpoints.agis.ALL.json
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc   2467372 Nov 23 16:06 log.47523449._001955.job.log.tgz.1
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc        95 Nov 23 16:08 pilot_heartbeat.json
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc      8627 Nov 23 16:08 heartbeat.json
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc      8192 Nov 23 16:08 boinc_mmap_file
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc        29 Nov 23 16:08 wrapper_checkpoint.txt
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc       819 Nov 23 16:08 pilotlog.txt
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc  11162552 Nov 23 16:08 log.47523449._001955.job.log.1
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc       353 Nov 23 16:08 output.list
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc       620 Nov 23 16:08 runtime_log
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc  13649920 Nov 23 16:08 result.tar.gz
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc      8817 Nov 23 16:08 runtime_log.err
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc       662 Nov 23 16:08 kprMDmqxGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzQGKDmnDukRm.diag
[2025-11-23 16:08:59] -rw-r--r--. 1 boinc boinc     21518 Nov 23 16:08 stderr.txt
[2025-11-23 16:08:59] HITS file was successfully produced:
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc 922281522 Nov 23 16:05 shared/HITS.pool.root.1
[2025-11-23 16:08:59]  *** Contents of shared directory: ***
[2025-11-23 16:08:59] total 1313884
[2025-11-23 16:08:59] -rw-r--r--. 2 boinc boinc 408869196 Nov 22 16:55 ATLAS.root_0
[2025-11-23 16:08:59] -rw-r--r--. 2 boinc boinc     15847 Nov 22 16:55 start_atlas.sh
[2025-11-23 16:08:59] -rw-r--r--. 2 boinc boinc    590103 Nov 22 16:55 input.tar.gz
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc 922281522 Nov 23 16:05 HITS.pool.root.1
[2025-11-23 16:08:59] -rw-------. 1 boinc boinc  13649920 Nov 23 16:08 result.tar.gz
16:09:01 (3602): run_atlas exited; CPU time 305127.978325
16:09:01 (3602): called boinc_finish(0)

</stderr_txt>
]]>

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