Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:31:57 (10293): wrapper (7.7.26015): starting
17:31:57 (10293): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 17:31:57] Arguments: --nthreads 8
[2025-11-23 17:31:57] Threads: 8
[2025-11-23 17:31:57] Checking for CVMFS
[2025-11-23 17:31:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 17:31:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 17:31:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 17:32:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 17:32:00] 2.11.2.0 24698 168099 146796 153215 3 213 24047595 25165825 4632 130560 10 57872239 99.900 28161109 2246 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 17:32:00] CVMFS is ok
[2025-11-23 17:32:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 17:32:00] Checking for apptainer binary...
[2025-11-23 17:32:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 17:32:00] Running /usr/bin/apptainer --version
[2025-11-23 17:32:00] apptainer version 1.3.2-1.el7
[2025-11-23 17:32:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 17:32:09] cg-vwn342.simple-grid.lan
[2025-11-23 17:32:09] apptainer works
[2025-11-23 17:32:09] Set ATHENA_PROC_NUMBER=8
[2025-11-23 17:32:09] Set ATHENA_CORE_NUMBER=8
[2025-11-23 17:32:09] Starting ATLAS job with PandaID=6893842792
[2025-11-23 17:32:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 13:43:24]  *** The last 200 lines of the pilot log: ***
[2025-11-24 13:43:24] 2025-11-24 12:42:02,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:43:24] 2025-11-24 12:42:02,095 | INFO     | time since job start (72354s) is within the limit (172800.0s)
[2025-11-24 13:43:24] 2025-11-24 12:42:04,105 | INFO     | time since job start (72356s) is within the limit (172800.0s)
[2025-11-24 13:43:24] 2025-11-24 12:42:04,521 | INFO     | monitor loop #4892: job 0:6893842792 is in state 'finished'
[2025-11-24 13:43:24] 2025-11-24 12:42:04,522 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:43:24] 2025-11-24 12:42:06,114 | INFO     | time since job start (72358s) is within the limit (172800.0s)
[2025-11-24 13:43:24] 2025-11-24 12:42:07,028 | INFO     | monitor loop #4893: job 0:6893842792 is in state 'finished'
[2025-11-24 13:43:24] 2025-11-24 12:42:07,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:43:24] 2025-11-24 12:42:08,121 | INFO     | time since job start (72360s) is within the limit (172800.0s)
[2025-11-24 13:43:24] 2025-11-24 12:42:09,532 | INFO     | monitor loop #4894: job 0:6893842792 is in state 'finished'
[2025-11-24 13:43:24] 2025-11-24 12:42:09,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:43:24] 2025-11-24 12:42:10,134 | INFO     | time since job start (72362s) is within the limit (172800.0s)
[2025-11-24 13:43:24] 2025-11-24 12:42:12,037 | INFO     | monitor loop #4895: job 0:6893842792 is in state 'finished'
[2025-11-24 13:43:24] 2025-11-24 12:42:12,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 13:43:24] 2025-11-24 12:42:12,145 | INFO     | time since job start (72364s) is within the limit (172800.0s)
[2025-11-24 13:43:24] 2025-11-24 12:42:14,152 | INFO     | time since job start (72366s) is within the limit (172800.0s)
[2025-11-24 13:43:24] 2025-11-24 12:42:14,280 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 13:43:24] 2025-11-24 12:42:14,282 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 13:43:24] 2025-11-24 12:42:14,285 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6893842792/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 13:43:24] 2025-11-24 12:42:14,286 | INFO     | extracted standard info from prmon json
[2025-11-24 13:43:24] 2025-11-24 12:42:14,286 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 13:43:24] 2025-11-24 12:42:14,286 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 13:43:24] 2025-11-24 12:42:14,311 | INFO     | fitting pss+swap vs Time
[2025-11-24 13:43:24] 2025-11-24 12:42:14,313 | INFO     | sum of square deviations: 504300372005.87415
[2025-11-24 13:43:24] 2025-11-24 12:42:14,367 | INFO     | sum of deviations: 3181397832597.371
[2025-11-24 13:43:24] 2025-11-24 12:42:14,367 | INFO     | mean x: 1763952139.542517
[2025-11-24 13:43:24] 2025-11-24 12:42:14,367 | INFO     | mean y: 2800658.582482993
[2025-11-24 13:43:24] 2025-11-24 12:42:14,367 | INFO     | intersect: -11125157647.743517
[2025-11-24 13:43:24] 2025-11-24 12:42:14,369 | INFO     | chi2: 22.803639854718973
[2025-11-24 13:43:24] 2025-11-24 12:42:14,371 | INFO     | sum of square deviations: 497895490950.41754
[2025-11-24 13:43:24] 2025-11-24 12:42:14,422 | INFO     | sum of deviations: 3573407374984.831
[2025-11-24 13:43:24] 2025-11-24 12:42:14,423 | INFO     | mean x: 1763951987.0469685
[2025-11-24 13:43:24] 2025-11-24 12:42:14,423 | INFO     | mean y: 2809991.966695132
[2025-11-24 13:43:24] 2025-11-24 12:42:14,423 | INFO     | intersect: -12657113936.246773
[2025-11-24 13:43:24] 2025-11-24 12:42:14,425 | INFO     | chi2: 19.520798784603343
[2025-11-24 13:43:24] 2025-11-24 12:42:14,425 | INFO     | current chi2=19.520798784603343 (change=14.39612750872436 %)
[2025-11-24 13:43:24] 2025-11-24 12:42:14,425 | INFO     | right removable region: 1170
[2025-11-24 13:43:24] 2025-11-24 12:42:14,427 | INFO     | sum of square deviations: 497894743090.41754
[2025-11-24 13:43:24] 2025-11-24 12:42:14,478 | INFO     | sum of deviations: 2693690081029.8887
[2025-11-24 13:43:24] 2025-11-24 12:42:14,478 | INFO     | mean x: 1763952292.0469685
[2025-11-24 13:43:24] 2025-11-24 12:42:14,478 | INFO     | mean y: 2812269.1110162255
[2025-11-24 13:43:24] 2025-11-24 12:42:14,478 | INFO     | intersect: -9540451359.26993
[2025-11-24 13:43:24] 2025-11-24 12:42:14,480 | INFO     | chi2: 17.92043964308262
[2025-11-24 13:43:24] 2025-11-24 12:42:14,480 | INFO     | current chi2=17.92043964308262 (change=21.414126177869043 %)
[2025-11-24 13:43:24] 2025-11-24 12:42:14,480 | INFO     | left removable region: 10
[2025-11-24 13:43:24] 2025-11-24 12:42:14,482 | INFO     | sum of square deviations: 483994650264.24524
[2025-11-24 13:43:24] 2025-11-24 12:42:14,534 | INFO     | sum of deviations: 2736926484907.3257
[2025-11-24 13:43:24] 2025-11-24 12:42:14,534 | INFO     | mean x: 1763952261.5568964
[2025-11-24 13:43:24] 2025-11-24 12:42:14,535 | INFO     | mean y: 2834157.578448276
[2025-11-24 13:43:24] 2025-11-24 12:42:14,535 | INFO     | intersect: -9972085317.526121
[2025-11-24 13:43:24] 2025-11-24 12:42:14,536 | INFO     | chi2: 10.163007568447265
[2025-11-24 13:43:24] 2025-11-24 12:42:14,536 | INFO     | current memory leak: 5.65 B/s (using 1160 data points, chi2=10.16)
[2025-11-24 13:43:24] 2025-11-24 12:42:14,537 | INFO     | could have reported an average CPU frequency of 1999 MHz (40 samples)
[2025-11-24 13:43:24] 2025-11-24 12:42:14,538 | INFO     | ..............................
[2025-11-24 13:43:24] 2025-11-24 12:42:14,538 | INFO     | . Timing measurements:
[2025-11-24 13:43:24] 2025-11-24 12:42:14,538 | INFO     | . get job = 0 s
[2025-11-24 13:43:24] 2025-11-24 12:42:14,538 | INFO     | . initial setup = 10 s
[2025-11-24 13:43:24] 2025-11-24 12:42:14,538 | INFO     | . payload setup = 170 s
[2025-11-24 13:43:24] 2025-11-24 12:42:14,538 | INFO     | . stage-in = 0 s
[2025-11-24 13:43:24] 2025-11-24 12:42:14,538 | INFO     | . payload execution = 71892 s
[2025-11-24 13:43:24] 2025-11-24 12:42:14,542 | INFO     | . stage-out = 5 s
[2025-11-24 13:43:24] 2025-11-24 12:42:14,542 | INFO     | . log creation = 2 s
[2025-11-24 13:43:24] 2025-11-24 12:42:14,542 | INFO     | ..............................
[2025-11-24 13:43:24] 2025-11-24 12:42:15,034 | INFO     | 
[2025-11-24 13:43:24] 2025-11-24 12:42:15,035 | INFO     | job summary report
[2025-11-24 13:43:24] 2025-11-24 12:42:15,035 | INFO     | --------------------------------------------------
[2025-11-24 13:43:24] 2025-11-24 12:42:15,035 | INFO     | PanDA job id: 6893842792
[2025-11-24 13:43:24] 2025-11-24 12:42:15,035 | INFO     | task id: 47523449
[2025-11-24 13:43:24] 2025-11-24 12:42:15,035 | INFO     | errors: (none)
[2025-11-24 13:43:24] 2025-11-24 12:42:15,035 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 13:43:24] 2025-11-24 12:42:15,035 | INFO     | pilot state: finished 
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | transexitcode: 0
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | exeerrorcode: 0
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | exeerrordiag: 
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | exitcode: 0
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | exitmsg: OK
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | cpuconsumptiontime: 334164 s
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | nevents: 1000
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | neventsw: 0
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | pid: 20627
[2025-11-24 13:43:24] 2025-11-24 12:42:15,036 | INFO     | pgrp: 20627
[2025-11-24 13:43:24] 2025-11-24 12:42:15,037 | INFO     | corecount: 8
[2025-11-24 13:43:24] 2025-11-24 12:42:15,037 | INFO     | event service: False
[2025-11-24 13:43:24] 2025-11-24 12:42:15,037 | INFO     | sizes: {0: 2298580, 1: 2298835, 2: 2298835, 13: 2298863, 23: 2298919, 34: 2298947, 45: 2299103, 56: 2299131, 66: 2299159, 77: 2299187, 88: 2299243, 91: 2299813, 98
[2025-11-24 13:43:24] 2025-11-24 12:42:15,037 | INFO     | --------------------------------------------------
[2025-11-24 13:43:24] 2025-11-24 12:42:15,037 | INFO     | 
[2025-11-24 13:43:24] 2025-11-24 12:42:15,037 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-24 13:43:24] 2025-11-24 12:42:15,607 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,607 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,607 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,608 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | job 6893842792 has completed (purged errors)
[2025-11-24 13:43:24] 2025-11-24 12:42:15,609 | INFO     | overall cleanup function is called
[2025-11-24 13:43:24] 2025-11-24 12:42:16,626 | INFO     | --- collectZombieJob: --- 10, [20627]
[2025-11-24 13:43:24] 2025-11-24 12:42:16,627 | INFO     | zombie collector waiting for pid 20627
[2025-11-24 13:43:24] 2025-11-24 12:42:16,627 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 13:43:24] 2025-11-24 12:42:16,627 | INFO     | collected zombie processes
[2025-11-24 13:43:24] 2025-11-24 12:42:16,627 | INFO     | will attempt to kill all subprocesses of pid=20627
[2025-11-24 13:43:24] 2025-11-24 12:42:16,753 | INFO     | process IDs to be killed: [20627] (in reverse order)
[2025-11-24 13:43:24] 2025-11-24 12:42:17,818 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 13:43:24] 2025-11-24 12:42:17,818 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 13:43:24] 2025-11-24 12:42:17,822 | INFO     | did not find any defunct processes belonging to 20627
[2025-11-24 13:43:24] 2025-11-24 12:42:17,825 | INFO     | did not find any defunct processes belonging to 20627
[2025-11-24 13:43:24] 2025-11-24 12:42:17,911 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 13:43:24] 2025-11-24 12:42:17,911 | INFO     | ready for new job
[2025-11-24 13:43:24] 2025-11-24 12:42:17,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 13:43:24] 2025-11-24 12:42:17,916 | INFO     | ***************************************
[2025-11-24 13:43:24] 2025-11-24 12:42:17,917 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 13:43:24] 2025-11-24 12:42:17,917 | INFO     | ***************************************
[2025-11-24 13:43:24] 2025-11-24 12:42:17,917 | INFO     | 
[2025-11-24 13:43:24] 2025-11-24 12:42:17,918 | INFO     | pilot is running in a VM
[2025-11-24 13:43:24] 2025-11-24 12:42:17,918 | INFO     | architecture information:
[2025-11-24 13:43:24] 2025-11-24 12:42:17,930 | INFO     | executing command: cat /etc/os-release
[2025-11-24 13:43:24] 2025-11-24 12:42:18,224 | INFO     | cat /etc/os-release:
[2025-11-24 13:43:24] NAME="CentOS Linux"
[2025-11-24 13:43:24] VERSION="7 (Core)"
[2025-11-24 13:43:24] ID="centos"
[2025-11-24 13:43:24] ID_LIKE="rhel fedora"
[2025-11-24 13:43:24] VERSION_ID="7"
[2025-11-24 13:43:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 13:43:24] ANSI_COLOR="0;31"
[2025-11-24 13:43:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 13:43:24] HOME_URL="https://www.centos.org/"
[2025-11-24 13:43:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 13:43:24] 
[2025-11-24 13:43:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 13:43:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 13:43:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 13:43:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 13:43:24] 
[2025-11-24 13:43:24] 2025-11-24 12:42:18,224 | INFO     | ***************************************
[2025-11-24 13:43:24] 2025-11-24 12:42:18,728 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-24 13:43:24] 2025-11-24 12:42:18,911 | INFO     | sufficient remaining disk space (495364079616 B)
[2025-11-24 13:43:24] 2025-11-24 12:42:18,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 13:43:24] 2025-11-24 12:42:18,912 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 13:43:24] 2025-11-24 12:42:18,912 | INFO     | update_server=False
[2025-11-24 13:43:24] 2025-11-24 12:42:18,912 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 13:43:24] 2025-11-24 12:42:18,913 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:43:24] 2025-11-24 12:42:18,914 | INFO     | aborting loop
[2025-11-24 13:43:24] 2025-11-24 12:42:19,528 | INFO     | all job control threads have been joined
[2025-11-24 13:43:24] 2025-11-24 12:42:19,708 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 13:43:24] 2025-11-24 12:42:19,919 | INFO     | [job] retrieve thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:19,920 | INFO     | [job] job monitor thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:19,966 | INFO     | [payload] validate_post thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:20,015 | INFO     | all data control threads have been joined
[2025-11-24 13:43:24] 2025-11-24 12:42:20,047 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:20,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 13:43:24] 2025-11-24 12:42:20,257 | INFO     | all payload control threads have been joined
[2025-11-24 13:43:24] 2025-11-24 12:42:20,314 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:20,387 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:20,487 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:20,534 | INFO     | [job] control thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:20,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 13:43:24] 2025-11-24 12:42:20,715 | INFO     | [job] queue monitor thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:20,845 | INFO     | [payload] failed_post thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:20,878 | INFO     | [job] validate thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:21,022 | INFO     | [data] control thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:21,208 | INFO     | [data] copytool_in thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:21,263 | INFO     | [payload] control thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:22,170 | INFO     | [data] copytool_out thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:24,709 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 13:43:24] 2025-11-24 12:42:47,373 | INFO     | PID=14071 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 13:43:24] 2025-11-24 12:42:47,373 | INFO     | .. there are 9 such processes running
[2025-11-24 13:43:24] 2025-11-24 12:42:47,374 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 13:43:24] 2025-11-24 12:42:47,374 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 13:43:24] 2025-11-24 12:42:47,375 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 13:43:24] 2025-11-24 12:43:13,081 | INFO     | [monitor] cgroup control has ended
[2025-11-24 13:43:24] 2025-11-24 12:43:14,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140605976958784)>', '<ExcThread(monitor, started 140605527148288)>']
[2025-11-24 13:43:24] 2025-11-24 12:43:15,541 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 13:43:24] 2025-11-24 12:43:15,542 | INFO     | [monitor] control thread has ended
[2025-11-24 13:43:24] 2025-11-24 12:43:20,016 | INFO     | all workflow threads have been joined
[2025-11-24 13:43:24] 2025-11-24 12:43:20,017 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 13:43:24] 2025-11-24 12:43:20,017 | INFO     | traces error code: 0
[2025-11-24 13:43:24] 2025-11-24 12:43:20,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 13:43:24] 2025-11-24 12:43:20,352 [wrapper] ==== pilot stdout END ====
[2025-11-24 13:43:24] 2025-11-24 12:43:20,425 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 13:43:24] 2025-11-24 12:43:20,496 [wrapper] pilotpid: 14071
[2025-11-24 13:43:24] 2025-11-24 12:43:20,578 [wrapper] Pilot exit status: 0
[2025-11-24 13:43:24] 2025-11-24 12:43:21,094 [wrapper] pandaids: 6893842792
[2025-11-24 13:43:24] 2025-11-24 12:43:22,087 [wrapper] cleanup supervisor_pilot  4877 14072
[2025-11-24 13:43:24] 2025-11-24 12:43:22,213 [wrapper] Test setup, not cleaning
[2025-11-24 13:43:24] 2025-11-24 12:43:22,298 [wrapper] apfmon messages muted
[2025-11-24 13:43:24] 2025-11-24 12:43:22,377 [wrapper] ==== wrapper stdout END ====
[2025-11-24 13:43:24] 2025-11-24 12:43:22,444 [wrapper] ==== wrapper stderr END ====
[2025-11-24 13:43:24]  *** Error codes and diagnostics ***
[2025-11-24 13:43:24]     "exeErrorCode": 0,
[2025-11-24 13:43:24]     "exeErrorDiag": "",
[2025-11-24 13:43:24]     "pilotErrorCode": 0,
[2025-11-24 13:43:24]     "pilotErrorDiag": "",
[2025-11-24 13:43:24]  *** Listing of results directory ***
[2025-11-24 13:43:24] total 1316356
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 13:43:24] -rwx------. 1 boinc boinc     36292 Nov 20 11:21 runpilot2-wrapper.sh
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:23 queuedata.json
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc       100 Nov 23 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 13:43:24] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 17:31 run_atlas
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc       105 Nov 23 17:31 job.xml
[2025-11-24 13:43:24] -rw-r--r--. 2 boinc boinc 407389250 Nov 23 17:31 EVNT.47493127._000199.pool.root.1
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc      6391 Nov 23 17:31 init_data.xml
[2025-11-24 13:43:24] -rw-r--r--. 2 boinc boinc     15847 Nov 23 17:31 start_atlas.sh
[2025-11-24 13:43:24] drwxrwx--x. 2 boinc boinc        68 Nov 23 17:31 shared
[2025-11-24 13:43:24] -rw-r--r--. 2 boinc boinc    590104 Nov 23 17:31 input.tar.gz
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc         0 Nov 23 17:31 boinc_lockfile
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc      2786 Nov 23 17:32 pandaJob.out
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc    989785 Nov 23 17:36 agis_schedconf.cvmfs.json
[2025-11-24 13:43:24] drwx------. 5 boinc boinc      4096 Nov 23 17:36 pilot3
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc       533 Nov 24 13:20 boinc_task_state.xml
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc 912656871 Nov 24 13:39 HITS.47523449._001984.pool.root.1
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc      1035 Nov 24 13:40 memory_monitor_summary.json
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc   1516227 Nov 24 13:40 agis_ddmendpoints.agis.ALL.json
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc   2329870 Nov 24 13:40 log.47523449._001984.job.log.tgz.1
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc      8646 Nov 24 13:42 heartbeat.json
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc        95 Nov 24 13:42 pilot_heartbeat.json
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc      8192 Nov 24 13:43 boinc_mmap_file
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc        29 Nov 24 13:43 wrapper_checkpoint.txt
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc      4884 Nov 24 13:43 pilotlog.txt
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc   9668997 Nov 24 13:43 log.47523449._001984.job.log.1
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc       353 Nov 24 13:43 output.list
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc       620 Nov 24 13:43 runtime_log
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc  12021760 Nov 24 13:43 result.tar.gz
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc      8817 Nov 24 13:43 runtime_log.err
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc       661 Nov 24 13:43 HUZNDmqxGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCOHKDm9RwJdn.diag
[2025-11-24 13:43:24] -rw-r--r--. 1 boinc boinc     21449 Nov 24 13:43 stderr.txt
[2025-11-24 13:43:24] HITS file was successfully produced:
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc 912656871 Nov 24 13:39 shared/HITS.pool.root.1
[2025-11-24 13:43:24]  *** Contents of shared directory: ***
[2025-11-24 13:43:24] total 1301448
[2025-11-24 13:43:24] -rw-r--r--. 2 boinc boinc 407389250 Nov 23 17:31 ATLAS.root_0
[2025-11-24 13:43:24] -rw-r--r--. 2 boinc boinc     15847 Nov 23 17:31 start_atlas.sh
[2025-11-24 13:43:24] -rw-r--r--. 2 boinc boinc    590104 Nov 23 17:31 input.tar.gz
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc 912656871 Nov 24 13:39 HITS.pool.root.1
[2025-11-24 13:43:24] -rw-------. 1 boinc boinc  12021760 Nov 24 13:43 result.tar.gz
13:43:26 (10293): run_atlas exited; CPU time 334452.892802
13:43:26 (10293): called boinc_finish(0)

</stderr_txt>
]]>

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