Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:17:55 (9561): wrapper (7.7.26015): starting
02:17:55 (9561): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 02:17:55] Arguments: --nthreads 8
[2025-11-23 02:17:55] Threads: 8
[2025-11-23 02:17:55] Checking for CVMFS
[2025-11-23 02:17:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:17:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:17:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:17:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:17:58] 2.11.2.0 30898 280206 139008 153192 3 118 21957602 25165825 4296 130560 4 126866401 99.877 75402045 3178 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 02:17:58] CVMFS is ok
[2025-11-23 02:17:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:17:58] Checking for apptainer binary...
[2025-11-23 02:17:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:17:58] Running /usr/bin/apptainer --version
[2025-11-23 02:17:59] apptainer version 1.3.2-1.el7
[2025-11-23 02:17:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:18:23] cg-vwn285.simple-grid.lan
[2025-11-23 02:18:23] apptainer works
[2025-11-23 02:18:23] Set ATHENA_PROC_NUMBER=8
[2025-11-23 02:18:23] Set ATHENA_CORE_NUMBER=8
[2025-11-23 02:18:23] Starting ATLAS job with PandaID=6893855461
[2025-11-23 02:18:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 04:13:53]  *** The last 200 lines of the pilot log: ***
[2025-11-24 04:13:54] 2025-11-24 03:13:07,877 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:13:54] 2025-11-24 03:13:08,008 | INFO     | time since job start (93083s) is within the limit (172800.0s)
[2025-11-24 04:13:54] 2025-11-24 03:13:09,193 | INFO     | PID=13441 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 04:13:54] 2025-11-24 03:13:09,194 | INFO     | .. there are 9 such processes running
[2025-11-24 04:13:54] 2025-11-24 03:13:10,194 | INFO     | time since job start (93085s) is within the limit (172800.0s)
[2025-11-24 04:13:54] 2025-11-24 03:13:10,382 | INFO     | monitor loop #6252: job 0:6893855461 is in state 'finished'
[2025-11-24 04:13:54] 2025-11-24 03:13:10,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:13:54] 2025-11-24 03:13:12,200 | INFO     | time since job start (93087s) is within the limit (172800.0s)
[2025-11-24 04:13:54] 2025-11-24 03:13:12,887 | INFO     | monitor loop #6253: job 0:6893855461 is in state 'finished'
[2025-11-24 04:13:54] 2025-11-24 03:13:12,888 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:13:54] 2025-11-24 03:13:14,208 | INFO     | time since job start (93089s) is within the limit (172800.0s)
[2025-11-24 04:13:54] 2025-11-24 03:13:15,392 | INFO     | monitor loop #6254: job 0:6893855461 is in state 'finished'
[2025-11-24 04:13:54] 2025-11-24 03:13:15,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:13:54] 2025-11-24 03:13:16,215 | INFO     | time since job start (93091s) is within the limit (172800.0s)
[2025-11-24 04:13:54] 2025-11-24 03:13:16,365 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 04:13:54] 2025-11-24 03:13:16,366 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 04:13:54] 2025-11-24 03:13:16,368 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6893855461/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 04:13:54] 2025-11-24 03:13:16,369 | INFO     | extracted standard info from prmon json
[2025-11-24 04:13:54] 2025-11-24 03:13:16,369 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 04:13:54] 2025-11-24 03:13:16,369 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 04:13:54] 2025-11-24 03:13:16,403 | INFO     | fitting pss+swap vs Time
[2025-11-24 04:13:54] 2025-11-24 03:13:16,416 | INFO     | sum of square deviations: 1082514092153.7286
[2025-11-24 04:13:54] 2025-11-24 03:13:16,498 | INFO     | sum of deviations: 2972553935296.247
[2025-11-24 04:13:54] 2025-11-24 03:13:16,498 | INFO     | mean x: 1763907622.3513513
[2025-11-24 04:13:54] 2025-11-24 03:13:16,498 | INFO     | mean y: 2854151.564271589
[2025-11-24 04:13:54] 2025-11-24 03:13:16,499 | INFO     | intersect: -4840787683.977716
[2025-11-24 04:13:54] 2025-11-24 03:13:16,500 | INFO     | chi2: 16.462606451141745
[2025-11-24 04:13:54] 2025-11-24 03:13:16,503 | INFO     | sum of square deviations: 1071846089454.5688
[2025-11-24 04:13:54] 2025-11-24 03:13:16,571 | INFO     | sum of deviations: 3466462615036.0415
[2025-11-24 04:13:54] 2025-11-24 03:13:16,572 | INFO     | mean x: 1763907469.8558202
[2025-11-24 04:13:54] 2025-11-24 03:13:16,572 | INFO     | mean y: 2861210.8029100527
[2025-11-24 04:13:54] 2025-11-24 03:13:16,572 | INFO     | intersect: -5701800457.319157
[2025-11-24 04:13:54] 2025-11-24 03:13:16,574 | INFO     | chi2: 13.378385339854567
[2025-11-24 04:13:54] 2025-11-24 03:13:16,574 | INFO     | current chi2=13.378385339854567 (change=18.734707170706102 %)
[2025-11-24 04:13:54] 2025-11-24 03:13:16,574 | INFO     | right removable region: 1511
[2025-11-24 04:13:54] 2025-11-24 03:13:16,576 | INFO     | sum of square deviations: 1071844838954.5682
[2025-11-24 04:13:54] 2025-11-24 03:13:16,653 | INFO     | sum of deviations: 2387691812782.2627
[2025-11-24 04:13:54] 2025-11-24 03:13:16,654 | INFO     | mean x: 1763907774.8558202
[2025-11-24 04:13:54] 2025-11-24 03:13:16,654 | INFO     | mean y: 2862509.703042328
[2025-11-24 04:13:54] 2025-11-24 03:13:16,654 | INFO     | intersect: -3926501143.933712
[2025-11-24 04:13:54] 2025-11-24 03:13:16,661 | INFO     | chi2: 12.57666047638501
[2025-11-24 04:13:54] 2025-11-24 03:13:16,662 | INFO     | current chi2=12.57666047638501 (change=23.60468244375258 %)
[2025-11-24 04:13:54] 2025-11-24 03:13:16,662 | INFO     | left removable region: 10
[2025-11-24 04:13:54] 2025-11-24 03:13:16,664 | INFO     | sum of square deviations: 1048621572491.1162
[2025-11-24 04:13:54] 2025-11-24 03:13:16,729 | INFO     | sum of deviations: 2725876439303.41
[2025-11-24 04:13:54] 2025-11-24 03:13:16,729 | INFO     | mean x: 1763907744.3630912
[2025-11-24 04:13:54] 2025-11-24 03:13:16,729 | INFO     | mean y: 2875036.7295136577
[2025-11-24 04:13:54] 2025-11-24 03:13:16,729 | INFO     | intersect: -4582377343.728172
[2025-11-24 04:13:54] 2025-11-24 03:13:16,731 | INFO     | chi2: 7.841848099844538
[2025-11-24 04:13:54] 2025-11-24 03:13:16,732 | INFO     | current memory leak: 2.60 B/s (using 1501 data points, chi2=7.84)
[2025-11-24 04:13:54] 2025-11-24 03:13:16,734 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 04:13:54] 2025-11-24 03:13:16,735 | INFO     | ..............................
[2025-11-24 04:13:54] 2025-11-24 03:13:16,735 | INFO     | . Timing measurements:
[2025-11-24 04:13:54] 2025-11-24 03:13:16,735 | INFO     | . get job = 0 s
[2025-11-24 04:13:54] 2025-11-24 03:13:16,735 | INFO     | . initial setup = 7 s
[2025-11-24 04:13:54] 2025-11-24 03:13:16,735 | INFO     | . payload setup = 142 s
[2025-11-24 04:13:54] 2025-11-24 03:13:16,735 | INFO     | . stage-in = 0 s
[2025-11-24 04:13:54] 2025-11-24 03:13:16,735 | INFO     | . payload execution = 92642 s
[2025-11-24 04:13:54] 2025-11-24 03:13:16,735 | INFO     | . stage-out = 8 s
[2025-11-24 04:13:54] 2025-11-24 03:13:16,736 | INFO     | . log creation = 2 s
[2025-11-24 04:13:54] 2025-11-24 03:13:16,736 | INFO     | ..............................
[2025-11-24 04:13:54] 2025-11-24 03:13:16,854 | INFO     | 
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | job summary report
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | --------------------------------------------------
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | PanDA job id: 6893855461
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | task id: 47523449
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | errors: (none)
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | pilot state: finished 
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | transexitcode: 0
[2025-11-24 04:13:54] 2025-11-24 03:13:16,855 | INFO     | exeerrorcode: 0
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | exeerrordiag: 
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | exitcode: 0
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | exitmsg: OK
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | cpuconsumptiontime: 343351 s
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | nevents: 1000
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | neventsw: 0
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | pid: 20122
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | pgrp: 20122
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | corecount: 8
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | event service: False
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | sizes: {0: 2298581, 1: 2298836, 2: 2298836, 12: 2298864, 23: 2298892, 34: 2298920, 45: 2299076, 55: 2299104, 66: 2299132, 77: 2299160, 87: 2299216, 95: 2299786, 98
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | --------------------------------------------------
[2025-11-24 04:13:54] 2025-11-24 03:13:16,856 | INFO     | 
[2025-11-24 04:13:54] 2025-11-24 03:13:16,857 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-24 04:13:54] 2025-11-24 03:13:17,402 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,402 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,402 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,402 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,403 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 04:13:54] 2025-11-24 03:13:17,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,404 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 04:13:54] 2025-11-24 03:13:17,404 | INFO     | job 6893855461 has completed (purged errors)
[2025-11-24 04:13:54] 2025-11-24 03:13:17,404 | INFO     | overall cleanup function is called
[2025-11-24 04:13:54] 2025-11-24 03:13:18,432 | INFO     | --- collectZombieJob: --- 10, [20122]
[2025-11-24 04:13:54] 2025-11-24 03:13:18,433 | INFO     | zombie collector waiting for pid 20122
[2025-11-24 04:13:54] 2025-11-24 03:13:18,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 04:13:54] 2025-11-24 03:13:18,433 | INFO     | collected zombie processes
[2025-11-24 04:13:54] 2025-11-24 03:13:18,433 | INFO     | will attempt to kill all subprocesses of pid=20122
[2025-11-24 04:13:54] 2025-11-24 03:13:18,546 | INFO     | process IDs to be killed: [20122] (in reverse order)
[2025-11-24 04:13:54] 2025-11-24 03:13:19,210 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 04:13:54] 2025-11-24 03:13:19,211 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 04:13:54] 2025-11-24 03:13:19,216 | INFO     | did not find any defunct processes belonging to 20122
[2025-11-24 04:13:54] 2025-11-24 03:13:19,220 | INFO     | did not find any defunct processes belonging to 20122
[2025-11-24 04:13:54] 2025-11-24 03:13:19,240 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 04:13:54] 2025-11-24 03:13:19,240 | INFO     | ready for new job
[2025-11-24 04:13:54] 2025-11-24 03:13:19,240 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 04:13:54] 2025-11-24 03:13:19,247 | INFO     | ***************************************
[2025-11-24 04:13:54] 2025-11-24 03:13:19,248 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 04:13:54] 2025-11-24 03:13:19,248 | INFO     | ***************************************
[2025-11-24 04:13:54] 2025-11-24 03:13:19,248 | INFO     | 
[2025-11-24 04:13:54] 2025-11-24 03:13:19,248 | INFO     | pilot is running in a VM
[2025-11-24 04:13:54] 2025-11-24 03:13:19,249 | INFO     | architecture information:
[2025-11-24 04:13:54] 2025-11-24 03:13:19,250 | INFO     | executing command: cat /etc/os-release
[2025-11-24 04:13:54] 2025-11-24 03:13:19,371 | INFO     | cat /etc/os-release:
[2025-11-24 04:13:54] NAME="CentOS Linux"
[2025-11-24 04:13:54] VERSION="7 (Core)"
[2025-11-24 04:13:54] ID="centos"
[2025-11-24 04:13:54] ID_LIKE="rhel fedora"
[2025-11-24 04:13:54] VERSION_ID="7"
[2025-11-24 04:13:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 04:13:54] ANSI_COLOR="0;31"
[2025-11-24 04:13:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 04:13:54] HOME_URL="https://www.centos.org/"
[2025-11-24 04:13:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 04:13:54] 
[2025-11-24 04:13:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 04:13:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 04:13:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 04:13:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 04:13:54] 
[2025-11-24 04:13:54] 2025-11-24 03:13:19,372 | INFO     | ***************************************
[2025-11-24 04:13:54] 2025-11-24 03:13:19,876 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-24 04:13:54] 2025-11-24 03:13:20,078 | INFO     | sufficient remaining disk space (494983446528 B)
[2025-11-24 04:13:54] 2025-11-24 03:13:20,078 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 04:13:54] 2025-11-24 03:13:20,078 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 04:13:54] 2025-11-24 03:13:20,079 | INFO     | update_server=False
[2025-11-24 04:13:54] 2025-11-24 03:13:20,079 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 04:13:54] 2025-11-24 03:13:20,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 04:13:54] 2025-11-24 03:13:20,431 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 04:13:54] 2025-11-24 03:13:20,432 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 04:13:54] 2025-11-24 03:13:20,432 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:13:54] 2025-11-24 03:13:20,432 | INFO     | will abort loop
[2025-11-24 04:13:54] 2025-11-24 03:13:20,581 | INFO     | all payload control threads have been joined
[2025-11-24 04:13:54] 2025-11-24 03:13:21,085 | INFO     | [job] retrieve thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:21,091 | INFO     | [data] copytool_in thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:21,126 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:21,133 | INFO     | all data control threads have been joined
[2025-11-24 04:13:54] 2025-11-24 03:13:21,370 | INFO     | [job] validate thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:21,438 | INFO     | [job] job monitor thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:21,587 | INFO     | [payload] control thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:21,600 | INFO     | all job control threads have been joined
[2025-11-24 04:13:54] 2025-11-24 03:13:21,753 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:21,870 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:13:54] 2025-11-24 03:13:22,088 | INFO     | [data] copytool_out thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:22,139 | INFO     | [data] control thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:22,209 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:22,337 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:22,469 | INFO     | [payload] failed_post thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:22,582 | INFO     | [payload] validate_post thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:22,606 | INFO     | [job] control thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:22,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 04:13:54] 2025-11-24 03:13:22,876 | INFO     | [job] queue monitor thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:26,883 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 04:13:54] 2025-11-24 03:13:27,375 | INFO     | [monitor] cgroup control has ended
[2025-11-24 04:13:54] 2025-11-24 03:13:27,885 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140614041290560)>', '<ExcThread(monitor, started 140613336954624)>']
[2025-11-24 04:13:54] 2025-11-24 03:13:32,911 | INFO     | all workflow threads have been joined
[2025-11-24 04:13:54] 2025-11-24 03:13:32,912 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 04:13:54] 2025-11-24 03:13:32,912 | INFO     | traces error code: 0
[2025-11-24 04:13:54] 2025-11-24 03:13:32,912 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 04:13:54] 2025-11-24 03:13:49,405 | INFO     | PID=13441 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 04:13:54] 2025-11-24 03:13:49,406 | INFO     | .. there are 9 such processes running
[2025-11-24 04:13:54] 2025-11-24 03:13:49,406 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 04:13:54] 2025-11-24 03:13:49,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 04:13:54] 2025-11-24 03:13:49,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 04:13:54] 2025-11-24 03:13:49,407 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 04:13:54] 2025-11-24 03:13:49,407 | INFO     | [monitor] control thread has ended
[2025-11-24 04:13:54] 2025-11-24 03:13:49,881 [wrapper] ==== pilot stdout END ====
[2025-11-24 04:13:54] 2025-11-24 03:13:49,929 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 04:13:54] 2025-11-24 03:13:49,974 [wrapper] pilotpid: 13441
[2025-11-24 04:13:54] 2025-11-24 03:13:50,023 [wrapper] Pilot exit status: 0
[2025-11-24 04:13:54] 2025-11-24 03:13:50,300 [wrapper] pandaids: 6893855461
[2025-11-24 04:13:54] 2025-11-24 03:13:50,951 [wrapper] cleanup supervisor_pilot  3515 13442
[2025-11-24 04:13:54] 2025-11-24 03:13:51,053 [wrapper] Test setup, not cleaning
[2025-11-24 04:13:54] 2025-11-24 03:13:51,153 [wrapper] apfmon messages muted
[2025-11-24 04:13:54] 2025-11-24 03:13:51,251 [wrapper] ==== wrapper stdout END ====
[2025-11-24 04:13:54] 2025-11-24 03:13:51,369 [wrapper] ==== wrapper stderr END ====
[2025-11-24 04:13:54]  *** Error codes and diagnostics ***
[2025-11-24 04:13:54]     "exeErrorCode": 0,
[2025-11-24 04:13:54]     "exeErrorDiag": "",
[2025-11-24 04:13:54]     "pilotErrorCode": 0,
[2025-11-24 04:13:54]     "pilotErrorDiag": "",
[2025-11-24 04:13:54]  *** Listing of results directory ***
[2025-11-24 04:13:54] total 1330952
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc    576529 Nov 20 13:07 pilot3.tar.gz
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc      5112 Nov 20 13:29 queuedata.json
[2025-11-24 04:13:54] -rwx------. 1 boinc boinc     36292 Nov 20 13:33 runpilot2-wrapper.sh
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc       100 Nov 23 02:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 04:13:54] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 02:17 run_atlas
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc       105 Nov 23 02:17 job.xml
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc      6391 Nov 23 02:17 init_data.xml
[2025-11-24 04:13:54] -rw-r--r--. 2 boinc boinc 407687742 Nov 23 02:17 EVNT.47493127._000445.pool.root.1
[2025-11-24 04:13:54] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:17 start_atlas.sh
[2025-11-24 04:13:54] drwxrwx--x. 2 boinc boinc        68 Nov 23 02:17 shared
[2025-11-24 04:13:54] -rw-r--r--. 2 boinc boinc    590101 Nov 23 02:17 input.tar.gz
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc         0 Nov 23 02:17 boinc_lockfile
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc      2786 Nov 23 02:18 pandaJob.out
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc    989784 Nov 23 02:21 agis_schedconf.cvmfs.json
[2025-11-24 04:13:54] drwx------. 5 boinc boinc      4096 Nov 23 02:21 pilot3
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc       533 Nov 24 03:48 boinc_task_state.xml
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc 921393175 Nov 24 04:10 HITS.47523449._004442.pool.root.1
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc      1033 Nov 24 04:11 memory_monitor_summary.json
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc   1526164 Nov 24 04:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc   2576392 Nov 24 04:11 log.47523449._004442.job.log.tgz.1
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc        95 Nov 24 04:13 pilot_heartbeat.json
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc      8642 Nov 24 04:13 heartbeat.json
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc      8192 Nov 24 04:13 boinc_mmap_file
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc        29 Nov 24 04:13 wrapper_checkpoint.txt
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc       820 Nov 24 04:13 pilotlog.txt
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc  12375820 Nov 24 04:13 log.47523449._004442.job.log.1
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc       353 Nov 24 04:13 output.list
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc       620 Nov 24 04:13 runtime_log
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc  14970880 Nov 24 04:13 result.tar.gz
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc      8833 Nov 24 04:13 runtime_log.err
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc       662 Nov 24 04:13 M3TKDmU2Ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmboHKDmd5252n.diag
[2025-11-24 04:13:54] -rw-r--r--. 1 boinc boinc     21498 Nov 24 04:13 stderr.txt
[2025-11-24 04:13:54] HITS file was successfully produced:
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc 921393175 Nov 24 04:10 shared/HITS.pool.root.1
[2025-11-24 04:13:54]  *** Contents of shared directory: ***
[2025-11-24 04:13:54] total 1313152
[2025-11-24 04:13:54] -rw-r--r--. 2 boinc boinc 407687742 Nov 23 02:17 ATLAS.root_0
[2025-11-24 04:13:54] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:17 start_atlas.sh
[2025-11-24 04:13:54] -rw-r--r--. 2 boinc boinc    590101 Nov 23 02:17 input.tar.gz
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc 921393175 Nov 24 04:10 HITS.pool.root.1
[2025-11-24 04:13:54] -rw-------. 1 boinc boinc  14970880 Nov 24 04:13 result.tar.gz
04:13:55 (9561): run_atlas exited; CPU time 343859.884485
04:13:55 (9561): called boinc_finish(0)

</stderr_txt>
]]>

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