Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:55:44 (3904994): wrapper (7.7.26015): starting
06:55:44 (3904994): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 06:55:44] Arguments: --nthreads 12
[2025-11-20 06:55:44] Threads: 12
[2025-11-20 06:55:44] Checking for CVMFS
[2025-11-20 06:55:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 06:55:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 06:55:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 06:55:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 06:55:47] 2.11.5.0 3414380 19573 314396 153084 3 337 28197772 45568001 21863 130560 0 179312198 99.786 111547722 25414 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 06:55:47] CVMFS is ok
[2025-11-20 06:55:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 06:55:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 06:55:47] Further information can be found at the LHC@home message board.
[2025-11-20 06:55:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 06:55:47] Checking for apptainer binary...
[2025-11-20 06:55:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 06:55:47] Running /usr/bin/apptainer --version
[2025-11-20 06:55:47] apptainer version 1.4.1-1.el9
[2025-11-20 06:55:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 06:55:48] wns0077.triumf.lcg
[2025-11-20 06:55:48] apptainer works
[2025-11-20 06:55:48] Set ATHENA_PROC_NUMBER=12
[2025-11-20 06:55:48] Set ATHENA_CORE_NUMBER=12
[2025-11-20 06:55:48] Starting ATLAS job with PandaID=6893855181
[2025-11-20 06:55:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 07:02:28]  *** The last 200 lines of the pilot log: ***
[2025-11-20 07:02:28] 2025-11-20 15:01:36,093 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 07:02:28] 2025-11-20 15:01:36,093 | WARNING  | wrong length of table data, x=[1763650652.0, 1763650713.0], y=[1541.0, 647255.0] (must be same and length>=4)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | could have reported an average CPU frequency of 2612 MHz (4 samples)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | ..............................
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . Timing measurements:
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . get job = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . initial setup = 3 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . payload setup = 21 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . stage-in = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . payload execution = 123 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . stage-out = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . log creation = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | ..............................
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 07:02:28] 2025-11-20 15:01:36,095 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893855181/pilotlog.txt
[2025-11-20 07:02:28] 2025-11-20 15:01:36,170 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 07:02:28] - Log from pilotlog.txt -
[2025-11-20 07:02:28] 2025-11-20 15:01:36,092 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893855181/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,092 | INFO     | extracted standard info from prmon json
[2025-11-20 07:02:28] 2025-11-20 15:01:36,092 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 07:02:28] 2025-11-20 15:01:36,092 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 07:02:28] 2025-11-20 15:01:36,093 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 07:02:28] 2025-11-20 15:01:36,093 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 07:02:28] 2025-11-20 15:01:36,093 | WARNING  | wrong length of table data, x=[1763650652.0, 1763650713.0], y=[1541.0, 647255.0] (must be same and length>=4)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | could have reported an average CPU frequency of 2612 MHz (4 samples)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | ..............................
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . Timing measurements:
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . get job = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . initial setup = 3 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . payload setup = 21 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . stage-in = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . payload execution = 123 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . stage-out = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . log creation = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | ..............................
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 07:02:28] 2025-11-20 15:01:36,095 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893855181/pilotlog.txt
[2025-11-20 07:02:28] 2025-11-20 15:01:36,170 | WARNING  | 
[2025-11-20 07:02:28] [begin log extracts]
[2025-11-20 07:02:28] - Log from pilotlog.txt -
[2025-11-20 07:02:28] 2025-11-20 15:01:36,092 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893855181/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,092 | INFO     | extracted standard info from prmon json
[2025-11-20 07:02:28] 2025-11-20 15:01:36,092 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 07:02:28] 2025-11-20 15:01:36,092 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 07:02:28] 2025-11-20 15:01:36,093 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 07:02:28] 2025-11-20 15:01:36,093 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 07:02:28] 2025-11-20 15:01:36,093 | WARNING  | wrong length of table data, x=[1763650652.0, 1763650713.0], y=[1541.0, 647255.0] (must be same and length>=4)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | could have reported an average CPU frequency of 2612 MHz (4 samples)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | ..............................
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . Timing measurements:
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . get job = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . initial setup = 3 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . payload setup = 21 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . stage-in = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . payload execution = 123 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . stage-out = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | . log creation = 0 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | ..............................
[2025-11-20 07:02:28] 2025-11-20 15:01:36,094 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 07:02:28] 2025-11-20 15:01:36,095 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893855181/pilotlog.txt
[2025-11-20 07:02:28] [end log extracts]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,170 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,171 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | 
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | job summary report
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | --------------------------------------------------
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | PanDA job id: 6893855181
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | task id: 47523449
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 06:59:18,787 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | pilot state: failed 
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | transexitcode: 65
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | exeerrorcode: 65
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | exitcode: 65
[2025-11-20 07:02:28] 2025-11-20 15:01:36,228 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | cpuconsumptiontime: 46 s
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | nevents: 0
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | neventsw: 0
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | pid: 3917104
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | pgrp: 3917104
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | corecount: 12
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | event service: False
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | sizes: {0: 2298576, 1: 2298831, 2: 2298831, 12: 2298859, 20: 2299149, 23: 2299177, 146: 2324730, 149: 2329020, 151: 2329048, 278: 2329214}
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | --------------------------------------------------
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | 
[2025-11-20 07:02:28] 2025-11-20 15:01:36,229 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 07:02:28] 2025-11-20 15:01:36,243 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,244 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,245 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,245 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,245 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,245 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 07:02:28] 2025-11-20 15:01:36,245 | INFO     | job 6893855181 has completed (purged errors)
[2025-11-20 07:02:28] 2025-11-20 15:01:36,245 | INFO     | overall cleanup function is called
[2025-11-20 07:02:28] 2025-11-20 15:01:37,252 | INFO     | --- collectZombieJob: --- 10, [3917104]
[2025-11-20 07:02:28] 2025-11-20 15:01:37,253 | INFO     | zombie collector waiting for pid 3917104
[2025-11-20 07:02:28] 2025-11-20 15:01:37,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 07:02:28] 2025-11-20 15:01:37,253 | INFO     | collected zombie processes
[2025-11-20 07:02:28] 2025-11-20 15:01:37,253 | INFO     | will attempt to kill all subprocesses of pid=3917104
[2025-11-20 07:02:28] 2025-11-20 15:01:37,981 | INFO     | process IDs to be killed: [3917104] (in reverse order)
[2025-11-20 07:02:28] 2025-11-20 15:01:38,434 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 07:02:28] 2025-11-20 15:01:38,434 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 07:02:28] 2025-11-20 15:01:38,460 | INFO     | did not find any defunct processes belonging to 3917104
[2025-11-20 07:02:28] 2025-11-20 15:01:38,471 | INFO     | did not find any defunct processes belonging to 3917104
[2025-11-20 07:02:28] 2025-11-20 15:01:38,472 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 07:02:28] 2025-11-20 15:01:38,474 | INFO     | ready for new job
[2025-11-20 07:02:28] 2025-11-20 15:01:38,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 07:02:28] 2025-11-20 15:01:38,475 | INFO     | ***************************************
[2025-11-20 07:02:28] 2025-11-20 15:01:38,475 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 07:02:28] 2025-11-20 15:01:38,475 | INFO     | ***************************************
[2025-11-20 07:02:28] 2025-11-20 15:01:38,475 | INFO     | 
[2025-11-20 07:02:28] 2025-11-20 15:01:38,477 | INFO     | architecture information:
[2025-11-20 07:02:28] 2025-11-20 15:01:38,496 | INFO     | executing command: cat /etc/os-release
[2025-11-20 07:02:28] 2025-11-20 15:01:38,568 | INFO     | cat /etc/os-release:
[2025-11-20 07:02:28] NAME="CentOS Linux"
[2025-11-20 07:02:28] VERSION="7 (Core)"
[2025-11-20 07:02:28] ID="centos"
[2025-11-20 07:02:28] ID_LIKE="rhel fedora"
[2025-11-20 07:02:28] VERSION_ID="7"
[2025-11-20 07:02:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 07:02:28] ANSI_COLOR="0;31"
[2025-11-20 07:02:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 07:02:28] HOME_URL="https://www.centos.org/"
[2025-11-20 07:02:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 07:02:28] 
[2025-11-20 07:02:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 07:02:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 07:02:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 07:02:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 07:02:28] 
[2025-11-20 07:02:28] 2025-11-20 15:01:38,568 | INFO     | ***************************************
[2025-11-20 07:02:28] 2025-11-20 15:01:39,072 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 07:02:28] 2025-11-20 15:01:39,173 | INFO     | sufficient remaining disk space (1705456435200 B)
[2025-11-20 07:02:28] 2025-11-20 15:01:39,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 07:02:28] 2025-11-20 15:01:39,173 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 07:02:28] 2025-11-20 15:01:39,173 | INFO     | update_server=False
[2025-11-20 07:02:28] 2025-11-20 15:01:39,173 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 07:02:28] 2025-11-20 15:01:39,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 07:02:28] 2025-11-20 15:01:39,456 | INFO     | aborting loop
[2025-11-20 07:02:28] 2025-11-20 15:01:39,690 | INFO     | all data control threads have been joined
[2025-11-20 07:02:28] 2025-11-20 15:01:40,178 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 07:02:28] 2025-11-20 15:01:40,180 | INFO     | [job] retrieve thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:40,223 | INFO     | [job] validate thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:40,299 | INFO     | [data] copytool_in thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:40,462 | INFO     | [job] job monitor thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:40,465 | INFO     | all job control threads have been joined
[2025-11-20 07:02:28] 2025-11-20 15:01:40,489 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:40,553 | INFO     | all payload control threads have been joined
[2025-11-20 07:02:28] 2025-11-20 15:01:40,618 | INFO     | [payload] failed_post thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:40,697 | INFO     | [data] control thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:40,730 | INFO     | [payload] validate_post thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:40,845 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:41,017 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:41,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 07:02:28] 2025-11-20 15:01:41,159 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:41,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 07:02:28] 2025-11-20 15:01:41,472 | INFO     | [job] control thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:41,559 | INFO     | [payload] control thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:42,185 | INFO     | [data] copytool_out thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:42,249 | INFO     | [job] queue monitor thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:01:45,166 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 07:02:28] 2025-11-20 15:02:08,945 | INFO     | PID=3909354 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 07:02:28] 2025-11-20 15:02:08,945 | INFO     | .. there are 35 such processes running
[2025-11-20 07:02:28] 2025-11-20 15:02:08,946 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 07:02:28] 2025-11-20 15:02:08,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 07:02:28] 2025-11-20 15:02:08,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 07:02:28] 2025-11-20 15:02:21,724 | INFO     | [monitor] cgroup control has ended
[2025-11-20 07:02:28] 2025-11-20 15:02:22,789 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140508827531072)>', '<ExcThread(monitor, started 140507707602688)>']
[2025-11-20 07:02:28] 2025-11-20 15:02:23,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 07:02:28] 2025-11-20 15:02:23,027 | INFO     | [monitor] control thread has ended
[2025-11-20 07:02:28] 2025-11-20 15:02:27,815 | INFO     | all workflow threads have been joined
[2025-11-20 07:02:28] 2025-11-20 15:02:27,816 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 07:02:28] 2025-11-20 15:02:27,816 | INFO     | traces error code: 0
[2025-11-20 07:02:28] 2025-11-20 15:02:27,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 07:02:28] 2025-11-20 15:02:28,025 [wrapper] ==== pilot stdout END ====
[2025-11-20 07:02:28] 2025-11-20 15:02:28,050 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 07:02:28] 2025-11-20 15:02:28,058 [wrapper] pilotpid: 3909354
[2025-11-20 07:02:28] 2025-11-20 15:02:28,063 [wrapper] Pilot exit status: 0
[2025-11-20 07:02:28] 2025-11-20 15:02:28,183 [wrapper] pandaids: 6893855181
[2025-11-20 07:02:28] 2025-11-20 15:02:28,480 [wrapper] cleanup supervisor_pilot 3909360 3909355
[2025-11-20 07:02:28] 2025-11-20 15:02:28,483 [wrapper] Test setup, not cleaning
[2025-11-20 07:02:28] 2025-11-20 15:02:28,485 [wrapper] apfmon messages muted
[2025-11-20 07:02:28] 2025-11-20 15:02:28,486 [wrapper] ==== wrapper stdout END ====
[2025-11-20 07:02:28] 2025-11-20 15:02:28,488 [wrapper] ==== wrapper stderr END ====
[2025-11-20 07:02:28]  *** Error codes and diagnostics ***
[2025-11-20 07:02:28]     "exeErrorCode": 65,
[2025-11-20 07:02:28]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 07:02:28]     "pilotErrorCode": 1305,
[2025-11-20 07:02:28]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 07:02:28]  *** Listing of results directory ***
[2025-11-20 07:02:28] total 404288
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc    576529 Nov 20 04:07 pilot3.tar.gz
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc      5112 Nov 20 04:29 queuedata.json
[2025-11-20 07:02:28] -rwx------. 1 boinc boinc     36292 Nov 20 04:31 runpilot2-wrapper.sh
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc       100 Nov 20 06:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 07:02:28] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 06:55 run_atlas
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc       105 Nov 20 06:55 job.xml
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc      6594 Nov 20 06:55 init_data.xml
[2025-11-20 07:02:28] -rw-r--r--. 2 boinc boinc 409761289 Nov 20 06:55 EVNT.47493127._000437.pool.root.1
[2025-11-20 07:02:28] -rw-r--r--. 2 boinc boinc    590105 Nov 20 06:55 input.tar.gz
[2025-11-20 07:02:28] -rw-r--r--. 2 boinc boinc     15847 Nov 20 06:55 start_atlas.sh
[2025-11-20 07:02:28] drwxrwx--x. 2 boinc boinc      4096 Nov 20 06:55 shared
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc         0 Nov 20 06:55 boinc_lockfile
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc      2785 Nov 20 06:55 pandaJob.out
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc    989440 Nov 20 06:56 agis_schedconf.cvmfs.json
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc   1526164 Nov 20 06:56 agis_ddmendpoints.agis.ALL.json
[2025-11-20 07:02:28] drwx------. 5 boinc boinc      4096 Nov 20 06:56 pilot3
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc       524 Nov 20 06:58 boinc_task_state.xml
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc       999 Nov 20 06:59 memory_monitor_summary.json
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc     49354 Nov 20 06:59 log.47523449._004364.job.log.tgz.1
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc        95 Nov 20 07:01 pilot_heartbeat.json
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc     10338 Nov 20 07:01 heartbeat.json
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc        23 Nov 20 07:02 wrapper_checkpoint.txt
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc      8192 Nov 20 07:02 boinc_mmap_file
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc      4823 Nov 20 07:02 pilotlog.txt
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc    105434 Nov 20 07:02 log.47523449._004364.job.log.1
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc       186 Nov 20 07:02 output.list
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc       620 Nov 20 07:02 runtime_log
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc    174080 Nov 20 07:02 result.tar.gz
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc      8636 Nov 20 07:02 runtime_log.err
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc       645 Nov 20 07:02 C3wKDmU0Ig8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwnHKDmrCbLBo.diag
[2025-11-20 07:02:28] -rw-r--r--. 1 boinc boinc     21738 Nov 20 07:02 stderr.txt
[2025-11-20 07:02:28] No HITS result produced
[2025-11-20 07:02:28]  *** Contents of shared directory: ***
[2025-11-20 07:02:28] total 400932
[2025-11-20 07:02:28] -rw-r--r--. 2 boinc boinc 409761289 Nov 20 06:55 ATLAS.root_0
[2025-11-20 07:02:28] -rw-r--r--. 2 boinc boinc    590105 Nov 20 06:55 input.tar.gz
[2025-11-20 07:02:28] -rw-r--r--. 2 boinc boinc     15847 Nov 20 06:55 start_atlas.sh
[2025-11-20 07:02:28] -rw-------. 1 boinc boinc    174080 Nov 20 07:02 result.tar.gz
07:02:30 (3904994): run_atlas exited; CPU time 49.564546
07:02:30 (3904994): called boinc_finish(0)

</stderr_txt>
]]>

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