Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:55:43 (31587): wrapper (7.7.26015): starting
23:55:43 (31587): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 23:55:43] Arguments: --nthreads 8
[2025-11-22 23:55:43] Threads: 8
[2025-11-22 23:55:43] Checking for CVMFS
[2025-11-22 23:55:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 23:55:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 23:55:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 23:55:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 23:55:46] 2.11.2.0 6428 280064 142496 153187 2 85 21453689 25165825 4632 130560 3 139328289 99.875 83452346 3245 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 23:55:46] CVMFS is ok
[2025-11-22 23:55:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 23:55:46] Checking for apptainer binary...
[2025-11-22 23:55:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 23:55:46] Running /usr/bin/apptainer --version
[2025-11-22 23:55:46] apptainer version 1.3.2-1.el7
[2025-11-22 23:55:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 23:55:50] cg-vwn335.simple-grid.lan
[2025-11-22 23:55:50] apptainer works
[2025-11-22 23:55:50] Set ATHENA_PROC_NUMBER=8
[2025-11-22 23:55:50] Set ATHENA_CORE_NUMBER=8
[2025-11-22 23:55:50] Starting ATLAS job with PandaID=6893840307
[2025-11-22 23:55:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 01:27:12]  *** The last 200 lines of the pilot log: ***
[2025-11-24 01:27:12] 2025-11-24 00:26:16,173 | INFO     | time since job start (91616s) is within the limit (172800.0s)
[2025-11-24 01:27:12] 2025-11-24 00:26:18,173 | INFO     | monitor loop #6159: job 0:6893840307 is in state 'finished'
[2025-11-24 01:27:12] 2025-11-24 00:26:18,174 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 01:27:12] 2025-11-24 00:26:18,180 | INFO     | time since job start (91618s) is within the limit (172800.0s)
[2025-11-24 01:27:12] 2025-11-24 00:26:20,188 | INFO     | time since job start (91620s) is within the limit (172800.0s)
[2025-11-24 01:27:12] 2025-11-24 00:26:20,690 | INFO     | monitor loop #6160: job 0:6893840307 is in state 'finished'
[2025-11-24 01:27:12] 2025-11-24 00:26:20,691 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 01:27:12] 2025-11-24 00:26:22,197 | INFO     | time since job start (91622s) is within the limit (172800.0s)
[2025-11-24 01:27:12] 2025-11-24 00:26:23,199 | INFO     | monitor loop #6161: job 0:6893840307 is in state 'finished'
[2025-11-24 01:27:12] 2025-11-24 00:26:23,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 01:27:12] 2025-11-24 00:26:24,211 | INFO     | time since job start (91624s) is within the limit (172800.0s)
[2025-11-24 01:27:12] 2025-11-24 00:26:25,431 | INFO     | PID=3016 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 01:27:12] 2025-11-24 00:26:25,431 | INFO     | .. there are 9 such processes running
[2025-11-24 01:27:12] 2025-11-24 00:26:25,706 | INFO     | monitor loop #6162: job 0:6893840307 is in state 'finished'
[2025-11-24 01:27:12] 2025-11-24 00:26:25,707 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 01:27:12] 2025-11-24 00:26:26,435 | INFO     | time since job start (91626s) is within the limit (172800.0s)
[2025-11-24 01:27:12] 2025-11-24 00:26:26,620 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 01:27:12] 2025-11-24 00:26:26,621 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 01:27:12] 2025-11-24 00:26:26,623 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893840307/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 01:27:12] 2025-11-24 00:26:26,623 | INFO     | extracted standard info from prmon json
[2025-11-24 01:27:12] 2025-11-24 00:26:26,624 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 01:27:12] 2025-11-24 00:26:26,624 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 01:27:12] 2025-11-24 00:26:26,652 | INFO     | fitting pss+swap vs Time
[2025-11-24 01:27:12] 2025-11-24 00:26:26,655 | INFO     | sum of square deviations: 1029871438357.7943
[2025-11-24 01:27:12] 2025-11-24 00:26:26,727 | INFO     | sum of deviations: 2741796859637.931
[2025-11-24 01:27:12] 2025-11-24 00:26:26,727 | INFO     | mean x: 1763898357.8076408
[2025-11-24 01:27:12] 2025-11-24 00:26:26,727 | INFO     | mean y: 2849008.61997319
[2025-11-24 01:27:12] 2025-11-24 00:26:26,727 | INFO     | intersect: -4693126428.730975
[2025-11-24 01:27:12] 2025-11-24 00:26:26,729 | INFO     | chi2: 20.79974529696429
[2025-11-24 01:27:12] 2025-11-24 00:26:26,731 | INFO     | sum of square deviations: 1019552714339.2146
[2025-11-24 01:27:12] 2025-11-24 00:26:26,790 | INFO     | sum of deviations: 3223237672576.208
[2025-11-24 01:27:12] 2025-11-24 00:26:26,791 | INFO     | mean x: 1763898205.3120377
[2025-11-24 01:27:12] 2025-11-24 00:26:26,791 | INFO     | mean y: 2856122.490921318
[2025-11-24 01:27:12] 2025-11-24 00:26:26,791 | INFO     | intersect: -5573572703.591059
[2025-11-24 01:27:12] 2025-11-24 00:26:26,793 | INFO     | chi2: 17.703939829005254
[2025-11-24 01:27:12] 2025-11-24 00:26:26,793 | INFO     | current chi2=17.703939829005254 (change=14.883862392347979 %)
[2025-11-24 01:27:12] 2025-11-24 00:26:26,793 | INFO     | right removable region: 1486
[2025-11-24 01:27:12] 2025-11-24 00:26:26,795 | INFO     | sum of square deviations: 1019551524229.2147
[2025-11-24 01:27:12] 2025-11-24 00:26:26,853 | INFO     | sum of deviations: 2121617480811.763
[2025-11-24 01:27:12] 2025-11-24 00:26:26,854 | INFO     | mean x: 1763898510.3120377
[2025-11-24 01:27:12] 2025-11-24 00:26:26,854 | INFO     | mean y: 2858172.571620713
[2025-11-24 01:27:12] 2025-11-24 00:26:26,854 | INFO     | intersect: -3667694835.217814
[2025-11-24 01:27:12] 2025-11-24 00:26:26,856 | INFO     | chi2: 16.306858379870963
[2025-11-24 01:27:12] 2025-11-24 00:26:26,856 | INFO     | current chi2=16.306858379870963 (change=21.60068237830326 %)
[2025-11-24 01:27:12] 2025-11-24 00:26:26,856 | INFO     | left removable region: 10
[2025-11-24 01:27:12] 2025-11-24 00:26:26,858 | INFO     | sum of square deviations: 997092632052.7018
[2025-11-24 01:27:12] 2025-11-24 00:26:26,923 | INFO     | sum of deviations: 2395402526293.274
[2025-11-24 01:27:12] 2025-11-24 00:26:26,923 | INFO     | mean x: 1763898479.8191056
[2025-11-24 01:27:12] 2025-11-24 00:26:26,923 | INFO     | mean y: 2871590.7276422763
[2025-11-24 01:27:12] 2025-11-24 00:26:26,924 | INFO     | intersect: -4234695450.5462356
[2025-11-24 01:27:12] 2025-11-24 00:26:26,925 | INFO     | chi2: 11.161174655831388
[2025-11-24 01:27:12] 2025-11-24 00:26:26,926 | INFO     | current memory leak: 2.40 B/s (using 1476 data points, chi2=11.16)
[2025-11-24 01:27:12] 2025-11-24 00:26:26,929 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 01:27:12] 2025-11-24 00:26:26,929 | INFO     | ..............................
[2025-11-24 01:27:12] 2025-11-24 00:26:26,929 | INFO     | . Timing measurements:
[2025-11-24 01:27:12] 2025-11-24 00:26:26,929 | INFO     | . get job = 0 s
[2025-11-24 01:27:12] 2025-11-24 00:26:26,929 | INFO     | . initial setup = 10 s
[2025-11-24 01:27:12] 2025-11-24 00:26:26,929 | INFO     | . payload setup = 161 s
[2025-11-24 01:27:12] 2025-11-24 00:26:26,930 | INFO     | . stage-in = 0 s
[2025-11-24 01:27:12] 2025-11-24 00:26:26,930 | INFO     | . payload execution = 91150 s
[2025-11-24 01:27:12] 2025-11-24 00:26:26,930 | INFO     | . stage-out = 6 s
[2025-11-24 01:27:12] 2025-11-24 00:26:26,930 | INFO     | . log creation = 2 s
[2025-11-24 01:27:12] 2025-11-24 00:26:26,930 | INFO     | ..............................
[2025-11-24 01:27:12] 2025-11-24 00:26:27,064 | INFO     | 
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | job summary report
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | --------------------------------------------------
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | PanDA job id: 6893840307
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | task id: 47523449
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | errors: (none)
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | pilot state: finished 
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | transexitcode: 0
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | exeerrorcode: 0
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | exeerrordiag: 
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | exitcode: 0
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | exitmsg: OK
[2025-11-24 01:27:12] 2025-11-24 00:26:27,065 | INFO     | cpuconsumptiontime: 338714 s
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | nevents: 1000
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | neventsw: 0
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | pid: 9617
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | pgrp: 9617
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | corecount: 8
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | event service: False
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | sizes: {0: 2297979, 1: 2298835, 2: 2298835, 12: 2298863, 23: 2298891, 34: 2298919, 45: 2299075, 55: 2299103, 66: 2299131, 77: 2299159, 88: 2299215, 98: 2299523, 10
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | --------------------------------------------------
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | 
[2025-11-24 01:27:12] 2025-11-24 00:26:27,066 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-24 01:27:12] 2025-11-24 00:26:27,110 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,110 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,110 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,110 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,111 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,111 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,112 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 01:27:12] 2025-11-24 00:26:27,112 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,113 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 01:27:12] 2025-11-24 00:26:27,113 | INFO     | job 6893840307 has completed (purged errors)
[2025-11-24 01:27:12] 2025-11-24 00:26:27,113 | INFO     | overall cleanup function is called
[2025-11-24 01:27:12] 2025-11-24 00:26:28,131 | INFO     | --- collectZombieJob: --- 10, [9617]
[2025-11-24 01:27:12] 2025-11-24 00:26:28,132 | INFO     | zombie collector waiting for pid 9617
[2025-11-24 01:27:12] 2025-11-24 00:26:28,132 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 01:27:12] 2025-11-24 00:26:28,132 | INFO     | collected zombie processes
[2025-11-24 01:27:12] 2025-11-24 00:26:28,132 | INFO     | will attempt to kill all subprocesses of pid=9617
[2025-11-24 01:27:12] 2025-11-24 00:26:28,293 | INFO     | process IDs to be killed: [9617] (in reverse order)
[2025-11-24 01:27:12] 2025-11-24 00:26:29,075 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 01:27:12] 2025-11-24 00:26:29,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 01:27:12] 2025-11-24 00:26:29,084 | INFO     | did not find any defunct processes belonging to 9617
[2025-11-24 01:27:12] 2025-11-24 00:26:29,087 | INFO     | did not find any defunct processes belonging to 9617
[2025-11-24 01:27:12] 2025-11-24 00:26:29,150 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 01:27:12] 2025-11-24 00:26:29,150 | INFO     | ready for new job
[2025-11-24 01:27:12] 2025-11-24 00:26:29,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 01:27:12] 2025-11-24 00:26:29,157 | INFO     | ***************************************
[2025-11-24 01:27:12] 2025-11-24 00:26:29,157 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 01:27:12] 2025-11-24 00:26:29,157 | INFO     | ***************************************
[2025-11-24 01:27:12] 2025-11-24 00:26:29,157 | INFO     | 
[2025-11-24 01:27:12] 2025-11-24 00:26:29,158 | INFO     | pilot is running in a VM
[2025-11-24 01:27:12] 2025-11-24 00:26:29,158 | INFO     | architecture information:
[2025-11-24 01:27:12] 2025-11-24 00:26:29,171 | INFO     | executing command: cat /etc/os-release
[2025-11-24 01:27:12] 2025-11-24 00:26:29,274 | INFO     | cat /etc/os-release:
[2025-11-24 01:27:12] NAME="CentOS Linux"
[2025-11-24 01:27:12] VERSION="7 (Core)"
[2025-11-24 01:27:12] ID="centos"
[2025-11-24 01:27:12] ID_LIKE="rhel fedora"
[2025-11-24 01:27:12] VERSION_ID="7"
[2025-11-24 01:27:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 01:27:12] ANSI_COLOR="0;31"
[2025-11-24 01:27:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 01:27:12] HOME_URL="https://www.centos.org/"
[2025-11-24 01:27:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 01:27:12] 
[2025-11-24 01:27:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 01:27:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 01:27:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 01:27:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 01:27:12] 
[2025-11-24 01:27:12] 2025-11-24 00:26:29,275 | INFO     | ***************************************
[2025-11-24 01:27:12] 2025-11-24 00:26:29,779 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-24 01:27:12] 2025-11-24 00:26:29,884 | INFO     | sufficient remaining disk space (495059992576 B)
[2025-11-24 01:27:12] 2025-11-24 00:26:29,885 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 01:27:12] 2025-11-24 00:26:29,885 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 01:27:12] 2025-11-24 00:26:29,885 | INFO     | update_server=False
[2025-11-24 01:27:12] 2025-11-24 00:26:29,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 01:27:12] 2025-11-24 00:26:29,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:27:12] 2025-11-24 00:26:29,886 | INFO     | aborting loop
[2025-11-24 01:27:12] 2025-11-24 00:26:29,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 01:27:12] 2025-11-24 00:26:29,891 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 01:27:12] 2025-11-24 00:26:30,290 | INFO     | all data control threads have been joined
[2025-11-24 01:27:12] 2025-11-24 00:26:30,436 | INFO     | all payload control threads have been joined
[2025-11-24 01:27:12] 2025-11-24 00:26:30,491 | INFO     | all job control threads have been joined
[2025-11-24 01:27:12] 2025-11-24 00:26:30,892 | INFO     | [job] job monitor thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:30,895 | INFO     | [job] retrieve thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:31,250 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:31,297 | INFO     | [data] control thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:31,431 | INFO     | [payload] failed_post thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:31,442 | INFO     | [payload] control thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:31,498 | INFO     | [job] control thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:31,704 | INFO     | [job] validate thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:31,898 | INFO     | [data] copytool_out thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:32,050 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:32,057 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:32,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 01:27:12] 2025-11-24 00:26:32,198 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:32,234 | INFO     | [data] copytool_in thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:32,234 | INFO     | [payload] validate_post thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:33,083 | INFO     | [job] queue monitor thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:33,900 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 01:27:12] 2025-11-24 00:26:59,600 | INFO     | PID=3016 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 01:27:12] 2025-11-24 00:26:59,601 | INFO     | .. there are 9 such processes running
[2025-11-24 01:27:12] 2025-11-24 00:26:59,602 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 01:27:12] 2025-11-24 00:26:59,602 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 01:27:12] 2025-11-24 00:26:59,602 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 01:27:12] 2025-11-24 00:26:59,936 | INFO     | [monitor] cgroup control has ended
[2025-11-24 01:27:12] 2025-11-24 00:27:01,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528636086080)>', '<ExcThread(monitor, started 140527974479616)>']
[2025-11-24 01:27:12] 2025-11-24 00:27:01,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 01:27:12] 2025-11-24 00:27:01,615 | INFO     | [monitor] control thread has ended
[2025-11-24 01:27:12] 2025-11-24 00:27:06,466 | INFO     | all workflow threads have been joined
[2025-11-24 01:27:12] 2025-11-24 00:27:06,467 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 01:27:12] 2025-11-24 00:27:06,467 | INFO     | traces error code: 0
[2025-11-24 01:27:12] 2025-11-24 00:27:06,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 01:27:12] 2025-11-24 00:27:07,036 [wrapper] ==== pilot stdout END ====
[2025-11-24 01:27:12] 2025-11-24 00:27:07,172 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 01:27:12] 2025-11-24 00:27:07,244 [wrapper] pilotpid: 3016
[2025-11-24 01:27:12] 2025-11-24 00:27:07,288 [wrapper] Pilot exit status: 0
[2025-11-24 01:27:12] 2025-11-24 00:27:07,627 [wrapper] pandaids: 6893840307
[2025-11-24 01:27:12] 2025-11-24 00:27:08,869 [wrapper] cleanup supervisor_pilot 23030 3017
[2025-11-24 01:27:12] 2025-11-24 00:27:08,969 [wrapper] Test setup, not cleaning
[2025-11-24 01:27:12] 2025-11-24 00:27:09,046 [wrapper] apfmon messages muted
[2025-11-24 01:27:12] 2025-11-24 00:27:09,188 [wrapper] ==== wrapper stdout END ====
[2025-11-24 01:27:12] 2025-11-24 00:27:09,290 [wrapper] ==== wrapper stderr END ====
[2025-11-24 01:27:12]  *** Error codes and diagnostics ***
[2025-11-24 01:27:12]     "exeErrorCode": 0,
[2025-11-24 01:27:12]     "exeErrorDiag": "",
[2025-11-24 01:27:12]     "pilotErrorCode": 0,
[2025-11-24 01:27:12]     "pilotErrorDiag": "",
[2025-11-24 01:27:12]  *** Listing of results directory ***
[2025-11-24 01:27:12] total 1329900
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 01:27:12] -rwx------. 1 boinc boinc     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc       100 Nov 22 23:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 01:27:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 23:55 run_atlas
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc       105 Nov 22 23:55 job.xml
[2025-11-24 01:27:12] -rw-r--r--. 2 boinc boinc 410973220 Nov 22 23:55 EVNT.47493127._000176.pool.root.1
[2025-11-24 01:27:12] -rw-r--r--. 2 boinc boinc     15847 Nov 22 23:55 start_atlas.sh
[2025-11-24 01:27:12] drwxrwx--x. 2 boinc boinc        68 Nov 22 23:55 shared
[2025-11-24 01:27:12] -rw-r--r--. 2 boinc boinc    590103 Nov 22 23:55 input.tar.gz
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc      6391 Nov 22 23:55 init_data.xml
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc         0 Nov 22 23:55 boinc_lockfile
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc      2786 Nov 22 23:55 pandaJob.out
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc    989784 Nov 22 23:59 agis_schedconf.cvmfs.json
[2025-11-24 01:27:12] drwx------. 5 boinc boinc      4096 Nov 22 23:59 pilot3
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc       533 Nov 24 00:56 boinc_task_state.xml
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc 917415699 Nov 24 01:22 HITS.47523449._001753.pool.root.1
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc      1030 Nov 24 01:24 memory_monitor_summary.json
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc   1526164 Nov 24 01:24 agis_ddmendpoints.agis.ALL.json
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc   2566154 Nov 24 01:24 log.47523449._001753.job.log.tgz.1
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc      8631 Nov 24 01:26 heartbeat.json
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc      8192 Nov 24 01:26 boinc_mmap_file
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc        29 Nov 24 01:26 wrapper_checkpoint.txt
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc        95 Nov 24 01:26 pilot_heartbeat.json
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc      4883 Nov 24 01:27 pilotlog.txt
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc  12192683 Nov 24 01:27 log.47523449._001753.job.log.1
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc       353 Nov 24 01:27 output.list
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc       620 Nov 24 01:27 runtime_log
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc  14776320 Nov 24 01:27 result.tar.gz
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc      8817 Nov 24 01:27 runtime_log.err
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc       662 Nov 24 01:27 AsQMDmgwGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMOGKDm5qHiPn.diag
[2025-11-24 01:27:12] -rw-r--r--. 1 boinc boinc     21495 Nov 24 01:27 stderr.txt
[2025-11-24 01:27:12] HITS file was successfully produced:
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc 917415699 Nov 24 01:22 shared/HITS.pool.root.1
[2025-11-24 01:27:12]  *** Contents of shared directory: ***
[2025-11-24 01:27:12] total 1312288
[2025-11-24 01:27:12] -rw-r--r--. 2 boinc boinc 410973220 Nov 22 23:55 ATLAS.root_0
[2025-11-24 01:27:12] -rw-r--r--. 2 boinc boinc     15847 Nov 22 23:55 start_atlas.sh
[2025-11-24 01:27:12] -rw-r--r--. 2 boinc boinc    590103 Nov 22 23:55 input.tar.gz
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc 917415699 Nov 24 01:22 HITS.pool.root.1
[2025-11-24 01:27:12] -rw-------. 1 boinc boinc  14776320 Nov 24 01:27 result.tar.gz
01:27:14 (31587): run_atlas exited; CPU time 339260.437570
01:27:14 (31587): called boinc_finish(0)

</stderr_txt>
]]>

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