Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:59:53 (17447): wrapper (7.7.26015): starting
00:59:53 (17447): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:59:53] Arguments: --nthreads 8
[2025-11-23 00:59:53] Threads: 8
[2025-11-23 00:59:53] Checking for CVMFS
[2025-11-23 00:59:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:59:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:59:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:59:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:59:55] 2.11.2.0 2066 83595 98232 153190 0 85 25067431 25165824 4295 130560 2 22327652 99.896 12390118 2100 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 00:59:55] CVMFS is ok
[2025-11-23 00:59:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:59:55] Checking for apptainer binary...
[2025-11-23 00:59:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:59:55] Running /usr/bin/apptainer --version
[2025-11-23 00:59:56] apptainer version 1.3.2-1.el7
[2025-11-23 00:59:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:00:07] cg-vwn446.simple-grid.lan
[2025-11-23 01:00:07] apptainer works
[2025-11-23 01:00:07] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:00:07] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:00:07] Starting ATLAS job with PandaID=6893839396
[2025-11-23 01:00:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:14:12]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:14:13] 2025-11-24 01:13:11,011 | INFO     | time since job start (90585s) is within the limit (172800.0s)
[2025-11-24 02:14:13] 2025-11-24 01:13:13,027 | INFO     | time since job start (90587s) is within the limit (172800.0s)
[2025-11-24 02:14:13] 2025-11-24 01:13:13,211 | INFO     | monitor loop #6099: job 0:6893839396 is in state 'finished'
[2025-11-24 02:14:13] 2025-11-24 01:13:13,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:14:13] 2025-11-24 01:13:15,033 | INFO     | time since job start (90589s) is within the limit (172800.0s)
[2025-11-24 02:14:13] 2025-11-24 01:13:15,725 | INFO     | monitor loop #6100: job 0:6893839396 is in state 'finished'
[2025-11-24 02:14:13] 2025-11-24 01:13:15,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:14:13] 2025-11-24 01:13:17,047 | INFO     | time since job start (90591s) is within the limit (172800.0s)
[2025-11-24 02:14:13] 2025-11-24 01:13:18,231 | INFO     | monitor loop #6101: job 0:6893839396 is in state 'finished'
[2025-11-24 02:14:13] 2025-11-24 01:13:18,231 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:14:13] 2025-11-24 01:13:19,066 | INFO     | time since job start (90593s) is within the limit (172800.0s)
[2025-11-24 02:14:13] 2025-11-24 01:13:20,741 | INFO     | monitor loop #6102: job 0:6893839396 is in state 'finished'
[2025-11-24 02:14:13] 2025-11-24 01:13:20,741 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:14:13] 2025-11-24 01:13:21,072 | INFO     | time since job start (90595s) is within the limit (172800.0s)
[2025-11-24 02:14:13] 2025-11-24 01:13:21,797 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 02:14:13] 2025-11-24 01:13:21,798 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 02:14:13] 2025-11-24 01:13:21,800 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893839396/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:14:13] 2025-11-24 01:13:21,801 | INFO     | extracted standard info from prmon json
[2025-11-24 02:14:13] 2025-11-24 01:13:21,801 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:14:13] 2025-11-24 01:13:21,801 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:14:13] 2025-11-24 01:13:21,829 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:14:13] 2025-11-24 01:13:21,832 | INFO     | sum of square deviations: 995067228611.4675
[2025-11-24 02:14:13] 2025-11-24 01:13:21,910 | INFO     | sum of deviations: 3296598208698.4746
[2025-11-24 02:14:13] 2025-11-24 01:13:21,911 | INFO     | mean x: 1763901688.341017
[2025-11-24 02:14:13] 2025-11-24 01:13:21,911 | INFO     | mean y: 2839199.1044067796
[2025-11-24 02:14:13] 2025-11-24 01:13:21,911 | INFO     | intersect: -5840861587.041853
[2025-11-24 02:14:13] 2025-11-24 01:13:21,918 | INFO     | chi2: 22.282581531834868
[2025-11-24 02:14:13] 2025-11-24 01:13:21,921 | INFO     | sum of square deviations: 984982721869.9464
[2025-11-24 02:14:13] 2025-11-24 01:13:22,002 | INFO     | sum of deviations: 3769819183353.1436
[2025-11-24 02:14:13] 2025-11-24 01:13:22,002 | INFO     | mean x: 1763901535.8455782
[2025-11-24 02:14:13] 2025-11-24 01:13:22,003 | INFO     | mean y: 2846353.899319728
[2025-11-24 02:14:13] 2025-11-24 01:13:22,003 | INFO     | intersect: -6748124703.494234
[2025-11-24 02:14:13] 2025-11-24 01:13:22,005 | INFO     | chi2: 19.24721252779042
[2025-11-24 02:14:13] 2025-11-24 01:13:22,005 | INFO     | current chi2=19.24721252779042 (change=13.622160429247621 %)
[2025-11-24 02:14:13] 2025-11-24 01:13:22,005 | INFO     | right removable region: 1469
[2025-11-24 02:14:13] 2025-11-24 01:13:22,007 | INFO     | sum of square deviations: 984981515289.9467
[2025-11-24 02:14:13] 2025-11-24 01:13:22,088 | INFO     | sum of deviations: 2682078573994.401
[2025-11-24 02:14:13] 2025-11-24 01:13:22,088 | INFO     | mean x: 1763901840.8455782
[2025-11-24 02:14:13] 2025-11-24 01:13:22,089 | INFO     | mean y: 2848490.662585034
[2025-11-24 02:14:13] 2025-11-24 01:13:22,089 | INFO     | intersect: -4800209496.236363
[2025-11-24 02:14:13] 2025-11-24 01:13:22,091 | INFO     | chi2: 17.65135797647277
[2025-11-24 02:14:13] 2025-11-24 01:13:22,091 | INFO     | current chi2=17.65135797647277 (change=20.78405300007776 %)
[2025-11-24 02:14:13] 2025-11-24 01:13:22,091 | INFO     | left removable region: 10
[2025-11-24 02:14:13] 2025-11-24 01:13:22,093 | INFO     | sum of square deviations: 963034740710.3799
[2025-11-24 02:14:13] 2025-11-24 01:13:22,260 | INFO     | sum of deviations: 2733674216849.924
[2025-11-24 02:14:13] 2025-11-24 01:13:22,260 | INFO     | mean x: 1763901810.3557231
[2025-11-24 02:14:13] 2025-11-24 01:13:22,260 | INFO     | mean y: 2865360.6860863604
[2025-11-24 02:14:13] 2025-11-24 01:13:22,261 | INFO     | intersect: -5004153281.722866
[2025-11-24 02:14:13] 2025-11-24 01:13:22,263 | INFO     | chi2: 10.56687121212859
[2025-11-24 02:14:13] 2025-11-24 01:13:22,263 | INFO     | current memory leak: 2.84 B/s (using 1459 data points, chi2=10.57)
[2025-11-24 02:14:13] 2025-11-24 01:13:22,266 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 02:14:13] 2025-11-24 01:13:22,267 | INFO     | ..............................
[2025-11-24 02:14:13] 2025-11-24 01:13:22,267 | INFO     | . Timing measurements:
[2025-11-24 02:14:13] 2025-11-24 01:13:22,267 | INFO     | . get job = 0 s
[2025-11-24 02:14:13] 2025-11-24 01:13:22,267 | INFO     | . initial setup = 9 s
[2025-11-24 02:14:13] 2025-11-24 01:13:22,267 | INFO     | . payload setup = 171 s
[2025-11-24 02:14:13] 2025-11-24 01:13:22,267 | INFO     | . stage-in = 0 s
[2025-11-24 02:14:13] 2025-11-24 01:13:22,267 | INFO     | . payload execution = 90112 s
[2025-11-24 02:14:13] 2025-11-24 01:13:22,267 | INFO     | . stage-out = 5 s
[2025-11-24 02:14:13] 2025-11-24 01:13:22,268 | INFO     | . log creation = 2 s
[2025-11-24 02:14:13] 2025-11-24 01:13:22,268 | INFO     | ..............................
[2025-11-24 02:14:13] 2025-11-24 01:13:22,723 | INFO     | 
[2025-11-24 02:14:13] 2025-11-24 01:13:22,723 | INFO     | job summary report
[2025-11-24 02:14:13] 2025-11-24 01:13:22,723 | INFO     | --------------------------------------------------
[2025-11-24 02:14:13] 2025-11-24 01:13:22,723 | INFO     | PanDA job id: 6893839396
[2025-11-24 02:14:13] 2025-11-24 01:13:22,723 | INFO     | task id: 47523449
[2025-11-24 02:14:13] 2025-11-24 01:13:22,723 | INFO     | errors: (none)
[2025-11-24 02:14:13] 2025-11-24 01:13:22,724 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:14:13] 2025-11-24 01:13:22,724 | INFO     | pilot state: finished 
[2025-11-24 02:14:13] 2025-11-24 01:13:22,724 | INFO     | transexitcode: 0
[2025-11-24 02:14:13] 2025-11-24 01:13:22,724 | INFO     | exeerrorcode: 0
[2025-11-24 02:14:13] 2025-11-24 01:13:22,724 | INFO     | exeerrordiag: 
[2025-11-24 02:14:13] 2025-11-24 01:13:22,724 | INFO     | exitcode: 0
[2025-11-24 02:14:13] 2025-11-24 01:13:22,724 | INFO     | exitmsg: OK
[2025-11-24 02:14:13] 2025-11-24 01:13:22,724 | INFO     | cpuconsumptiontime: 331861 s
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | nevents: 1000
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | neventsw: 0
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | pid: 27859
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | pgrp: 27859
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | corecount: 8
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | event service: False
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | sizes: {0: 2298580, 1: 2298835, 2: 2298835, 13: 2298863, 24: 2298919, 34: 2298947, 45: 2299103, 56: 2299131, 67: 2299159, 77: 2299187, 88: 2299243, 99: 2299841, 11
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | --------------------------------------------------
[2025-11-24 02:14:13] 2025-11-24 01:13:22,725 | INFO     | 
[2025-11-24 02:14:13] 2025-11-24 01:13:22,726 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-24 02:14:13] 2025-11-24 01:13:23,037 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,038 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:14:13] 2025-11-24 01:13:23,039 | INFO     | job 6893839396 has completed (purged errors)
[2025-11-24 02:14:13] 2025-11-24 01:13:23,040 | INFO     | overall cleanup function is called
[2025-11-24 02:14:13] 2025-11-24 01:13:24,057 | INFO     | --- collectZombieJob: --- 10, [27859]
[2025-11-24 02:14:13] 2025-11-24 01:13:24,057 | INFO     | zombie collector waiting for pid 27859
[2025-11-24 02:14:13] 2025-11-24 01:13:24,057 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:14:13] 2025-11-24 01:13:24,057 | INFO     | collected zombie processes
[2025-11-24 02:14:13] 2025-11-24 01:13:24,057 | INFO     | will attempt to kill all subprocesses of pid=27859
[2025-11-24 02:14:13] 2025-11-24 01:13:24,165 | INFO     | process IDs to be killed: [27859] (in reverse order)
[2025-11-24 02:14:13] 2025-11-24 01:13:24,450 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:14:13] 2025-11-24 01:13:24,451 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:14:13] 2025-11-24 01:13:24,454 | INFO     | did not find any defunct processes belonging to 27859
[2025-11-24 02:14:13] 2025-11-24 01:13:24,458 | INFO     | did not find any defunct processes belonging to 27859
[2025-11-24 02:14:13] 2025-11-24 01:13:24,460 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:14:13] 2025-11-24 01:13:24,460 | INFO     | ready for new job
[2025-11-24 02:14:13] 2025-11-24 01:13:24,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:14:13] 2025-11-24 01:13:24,467 | INFO     | ***************************************
[2025-11-24 02:14:13] 2025-11-24 01:13:24,467 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:14:13] 2025-11-24 01:13:24,467 | INFO     | ***************************************
[2025-11-24 02:14:13] 2025-11-24 01:13:24,467 | INFO     | 
[2025-11-24 02:14:13] 2025-11-24 01:13:24,468 | INFO     | pilot is running in a VM
[2025-11-24 02:14:13] 2025-11-24 01:13:24,468 | INFO     | architecture information:
[2025-11-24 02:14:13] 2025-11-24 01:13:24,469 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:14:13] 2025-11-24 01:13:24,557 | INFO     | cat /etc/os-release:
[2025-11-24 02:14:13] NAME="CentOS Linux"
[2025-11-24 02:14:13] VERSION="7 (Core)"
[2025-11-24 02:14:13] ID="centos"
[2025-11-24 02:14:13] ID_LIKE="rhel fedora"
[2025-11-24 02:14:13] VERSION_ID="7"
[2025-11-24 02:14:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:14:13] ANSI_COLOR="0;31"
[2025-11-24 02:14:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:14:13] HOME_URL="https://www.centos.org/"
[2025-11-24 02:14:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:14:13] 
[2025-11-24 02:14:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:14:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:14:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:14:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:14:13] 
[2025-11-24 02:14:13] 2025-11-24 01:13:24,558 | INFO     | ***************************************
[2025-11-24 02:14:13] 2025-11-24 01:13:25,061 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-24 02:14:13] 2025-11-24 01:13:25,350 | INFO     | sufficient remaining disk space (494785265664 B)
[2025-11-24 02:14:13] 2025-11-24 01:13:25,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:14:13] 2025-11-24 01:13:25,350 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:14:13] 2025-11-24 01:13:25,351 | INFO     | update_server=False
[2025-11-24 02:14:13] 2025-11-24 01:13:25,351 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:14:13] 2025-11-24 01:13:25,521 | INFO     | all job control threads have been joined
[2025-11-24 02:14:13] 2025-11-24 01:13:25,528 | INFO     | all payload control threads have been joined
[2025-11-24 02:14:13] 2025-11-24 01:13:25,625 | INFO     | all data control threads have been joined
[2025-11-24 02:14:13] 2025-11-24 01:13:25,761 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 02:14:13] 2025-11-24 01:13:25,761 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 02:14:13] 2025-11-24 01:13:25,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:14:13] 2025-11-24 01:13:25,761 | INFO     | will abort loop
[2025-11-24 02:14:13] 2025-11-24 01:13:26,338 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:14:13] 2025-11-24 01:13:26,357 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:26,500 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:26,527 | INFO     | [job] control thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:26,535 | INFO     | [payload] control thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:26,631 | INFO     | [data] control thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:26,772 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:27,041 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:27,064 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:27,095 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:27,153 | INFO     | [job] validate thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:27,244 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:27,517 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:27,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:14:13] 2025-11-24 01:13:27,678 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:28,346 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:28,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:14:13] 2025-11-24 01:13:28,543 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:32,494 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:14:13] 2025-11-24 01:13:54,329 | INFO     | PID=21284 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 02:14:13] 2025-11-24 01:13:54,329 | INFO     | .. there are 9 such processes running
[2025-11-24 02:14:13] 2025-11-24 01:13:54,329 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:14:13] 2025-11-24 01:13:54,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:14:13] 2025-11-24 01:13:54,330 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:14:13] 2025-11-24 01:14:03,916 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:14:13] 2025-11-24 01:14:04,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139925122774848)>', '<ExcThread(monitor, started 139924363785984)>']
[2025-11-24 02:14:13] 2025-11-24 01:14:05,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:14:13] 2025-11-24 01:14:05,395 | INFO     | [monitor] control thread has ended
[2025-11-24 02:14:13] 2025-11-24 01:14:09,555 | INFO     | all workflow threads have been joined
[2025-11-24 02:14:13] 2025-11-24 01:14:09,555 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:14:13] 2025-11-24 01:14:09,555 | INFO     | traces error code: 0
[2025-11-24 02:14:13] 2025-11-24 01:14:09,556 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:14:13] 2025-11-24 01:14:10,024 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:14:13] 2025-11-24 01:14:10,197 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:14:13] 2025-11-24 01:14:10,268 [wrapper] pilotpid: 21284
[2025-11-24 02:14:13] 2025-11-24 01:14:10,338 [wrapper] Pilot exit status: 0
[2025-11-24 02:14:13] 2025-11-24 01:14:10,367 [wrapper] pandaids: 6893839396
[2025-11-24 02:14:13] 2025-11-24 01:14:10,419 [wrapper] cleanup supervisor_pilot 22311 21285
[2025-11-24 02:14:13] 2025-11-24 01:14:10,431 [wrapper] Test setup, not cleaning
[2025-11-24 02:14:13] 2025-11-24 01:14:10,436 [wrapper] apfmon messages muted
[2025-11-24 02:14:13] 2025-11-24 01:14:10,440 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:14:13] 2025-11-24 01:14:10,454 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:14:13]  *** Error codes and diagnostics ***
[2025-11-24 02:14:13]     "exeErrorCode": 0,
[2025-11-24 02:14:13]     "exeErrorDiag": "",
[2025-11-24 02:14:13]     "pilotErrorCode": 0,
[2025-11-24 02:14:13]     "pilotErrorDiag": "",
[2025-11-24 02:14:13]  *** Listing of results directory ***
[2025-11-24 02:14:13] total 1320228
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 02:14:13] -rwx------. 1 boinc boinc     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:20 queuedata.json
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc       100 Nov 23 00:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:14:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 00:59 run_atlas
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc       105 Nov 23 00:59 job.xml
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc      6393 Nov 23 00:59 init_data.xml
[2025-11-24 02:14:13] -rw-r--r--. 2 boinc boinc 409453898 Nov 23 00:59 EVNT.47493127._000150.pool.root.1
[2025-11-24 02:14:13] -rw-r--r--. 2 boinc boinc     15847 Nov 23 00:59 start_atlas.sh
[2025-11-24 02:14:13] drwxrwx--x. 2 boinc boinc        68 Nov 23 00:59 shared
[2025-11-24 02:14:13] -rw-r--r--. 2 boinc boinc    590103 Nov 23 00:59 input.tar.gz
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc         0 Nov 23 00:59 boinc_lockfile
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc      2786 Nov 23 01:00 pandaJob.out
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc    989784 Nov 23 01:03 agis_schedconf.cvmfs.json
[2025-11-24 02:14:13] drwx------. 5 boinc boinc      4096 Nov 23 01:03 pilot3
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc       533 Nov 24 01:47 boinc_task_state.xml
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc 909300917 Nov 24 02:10 HITS.47523449._001499.pool.root.1
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc      1031 Nov 24 02:11 memory_monitor_summary.json
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc   1526164 Nov 24 02:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc   2543086 Nov 24 02:11 log.47523449._001499.job.log.tgz.1
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc        95 Nov 24 02:13 pilot_heartbeat.json
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc      8630 Nov 24 02:13 heartbeat.json
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc      8192 Nov 24 02:13 boinc_mmap_file
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc        29 Nov 24 02:13 wrapper_checkpoint.txt
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc      5070 Nov 24 02:14 pilotlog.txt
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc  12079835 Nov 24 02:14 log.47523449._001499.job.log.1
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc       353 Nov 24 02:14 output.list
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc       620 Nov 24 02:14 runtime_log
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc  14643200 Nov 24 02:14 result.tar.gz
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc       662 Nov 24 02:14 XHbNDmrvGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfKHKDmHeWlqn.diag
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc      8817 Nov 24 02:14 runtime_log.err
[2025-11-24 02:14:13] -rw-r--r--. 1 boinc boinc     21406 Nov 24 02:14 stderr.txt
[2025-11-24 02:14:13] HITS file was successfully produced:
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc 909300917 Nov 24 02:10 shared/HITS.pool.root.1
[2025-11-24 02:14:13]  *** Contents of shared directory: ***
[2025-11-24 02:14:13] total 1302748
[2025-11-24 02:14:13] -rw-r--r--. 2 boinc boinc 409453898 Nov 23 00:59 ATLAS.root_0
[2025-11-24 02:14:13] -rw-r--r--. 2 boinc boinc     15847 Nov 23 00:59 start_atlas.sh
[2025-11-24 02:14:13] -rw-r--r--. 2 boinc boinc    590103 Nov 23 00:59 input.tar.gz
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc 909300917 Nov 24 02:10 HITS.pool.root.1
[2025-11-24 02:14:13] -rw-------. 1 boinc boinc  14643200 Nov 24 02:14 result.tar.gz
02:14:14 (17447): run_atlas exited; CPU time 332376.100470
02:14:14 (17447): called boinc_finish(0)

</stderr_txt>
]]>

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