Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:57:23 (32103): wrapper (7.7.26015): starting
16:57:23 (32103): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 16:57:23] Arguments: --nthreads 8
[2025-11-23 16:57:23] Threads: 8
[2025-11-23 16:57:23] Checking for CVMFS
[2025-11-23 16:57:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 16:57:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 16:57:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 16:57:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 16:57:26] 2.11.2.0 6805 281094 143140 153213 3 161 23775419 25165824 4176 130560 30 120184820 99.859 77705816 3103 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 16:57:26] CVMFS is ok
[2025-11-23 16:57:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 16:57:26] Checking for apptainer binary...
[2025-11-23 16:57:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 16:57:26] Running /usr/bin/apptainer --version
[2025-11-23 16:57:26] apptainer version 1.3.2-1.el7
[2025-11-23 16:57:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 16:57:44] cg-vwn251.simple-grid.lan
[2025-11-23 16:57:44] apptainer works
[2025-11-23 16:57:44] Set ATHENA_PROC_NUMBER=8
[2025-11-23 16:57:44] Set ATHENA_CORE_NUMBER=8
[2025-11-23 16:57:44] Starting ATLAS job with PandaID=6893852667
[2025-11-23 16:57:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 14:00:48]  *** The last 200 lines of the pilot log: ***
[2025-11-24 14:00:48] 2025-11-24 12:59:48,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:00:48] 2025-11-24 12:59:49,906 | INFO     | time since job start (75502s) is within the limit (172800.0s)
[2025-11-24 14:00:48] 2025-11-24 12:59:51,189 | INFO     | monitor loop #5090: job 0:6893852667 is in state 'finished'
[2025-11-24 14:00:48] 2025-11-24 12:59:51,190 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:00:48] 2025-11-24 12:59:51,914 | INFO     | time since job start (75504s) is within the limit (172800.0s)
[2025-11-24 14:00:48] 2025-11-24 12:59:53,700 | INFO     | monitor loop #5091: job 0:6893852667 is in state 'finished'
[2025-11-24 14:00:48] 2025-11-24 12:59:53,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:00:48] 2025-11-24 12:59:53,928 | INFO     | time since job start (75506s) is within the limit (172800.0s)
[2025-11-24 14:00:48] 2025-11-24 12:59:55,939 | INFO     | time since job start (75508s) is within the limit (172800.0s)
[2025-11-24 14:00:48] 2025-11-24 12:59:56,208 | INFO     | monitor loop #5092: job 0:6893852667 is in state 'finished'
[2025-11-24 14:00:48] 2025-11-24 12:59:56,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:00:48] 2025-11-24 12:59:57,946 | INFO     | time since job start (75510s) is within the limit (172800.0s)
[2025-11-24 14:00:48] 2025-11-24 12:59:58,712 | INFO     | monitor loop #5093: job 0:6893852667 is in state 'finished'
[2025-11-24 14:00:48] 2025-11-24 12:59:58,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 14:00:48] 2025-11-24 12:59:58,917 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 14:00:48] 2025-11-24 12:59:58,918 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 14:00:48] 2025-11-24 12:59:58,920 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6893852667/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 14:00:48] 2025-11-24 12:59:58,921 | INFO     | extracted standard info from prmon json
[2025-11-24 14:00:48] 2025-11-24 12:59:58,921 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 14:00:48] 2025-11-24 12:59:58,921 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 14:00:48] 2025-11-24 12:59:58,945 | INFO     | fitting pss+swap vs Time
[2025-11-24 14:00:48] 2025-11-24 12:59:58,947 | INFO     | sum of square deviations: 574198204273.0125
[2025-11-24 14:00:48] 2025-11-24 12:59:59,056 | INFO     | sum of deviations: 1721084426291.7266
[2025-11-24 14:00:48] 2025-11-24 12:59:59,056 | INFO     | mean x: 1763951602.6758957
[2025-11-24 14:00:48] 2025-11-24 12:59:59,056 | INFO     | mean y: 2813071.700325733
[2025-11-24 14:00:48] 2025-11-24 12:59:59,056 | INFO     | intersect: -5284402404.60294
[2025-11-24 14:00:48] 2025-11-24 12:59:59,058 | INFO     | chi2: 24.39480482502619
[2025-11-24 14:00:48] 2025-11-24 12:59:59,060 | INFO     | sum of square deviations: 567213155571.0638
[2025-11-24 14:00:48] 2025-11-24 12:59:59,151 | INFO     | PID=3535 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 14:00:48] 2025-11-24 12:59:59,151 | INFO     | .. there are 2 such processes running
[2025-11-24 14:00:48] 2025-11-24 12:59:59,159 | INFO     | sum of deviations: 2120057760315.899
[2025-11-24 14:00:48] 2025-11-24 12:59:59,160 | INFO     | mean x: 1763951450.1807032
[2025-11-24 14:00:48] 2025-11-24 12:59:59,160 | INFO     | mean y: 2821781.122649223
[2025-11-24 14:00:48] 2025-11-24 12:59:59,160 | INFO     | intersect: -6590253368.92569
[2025-11-24 14:00:48] 2025-11-24 12:59:59,162 | INFO     | chi2: 21.14924297599588
[2025-11-24 14:00:48] 2025-11-24 12:59:59,162 | INFO     | current chi2=21.14924297599588 (change=13.304315702910428 %)
[2025-11-24 14:00:48] 2025-11-24 12:59:59,162 | INFO     | right removable region: 1222
[2025-11-24 14:00:48] 2025-11-24 12:59:59,164 | INFO     | sum of square deviations: 567212274731.0637
[2025-11-24 14:00:48] 2025-11-24 12:59:59,228 | INFO     | sum of deviations: 1212194946654.1318
[2025-11-24 14:00:48] 2025-11-24 12:59:59,229 | INFO     | mean x: 1763951755.1807032
[2025-11-24 14:00:48] 2025-11-24 12:59:59,229 | INFO     | mean y: 2824180.0310711367
[2025-11-24 14:00:48] 2025-11-24 12:59:59,229 | INFO     | intersect: -3766934513.5472007
[2025-11-24 14:00:48] 2025-11-24 12:59:59,230 | INFO     | chi2: 19.78420844020159
[2025-11-24 14:00:48] 2025-11-24 12:59:59,231 | INFO     | current chi2=19.78420844020159 (change=18.89991093552293 %)
[2025-11-24 14:00:48] 2025-11-24 12:59:59,231 | INFO     | left removable region: 10
[2025-11-24 14:00:48] 2025-11-24 12:59:59,232 | INFO     | sum of square deviations: 552044193750.5905
[2025-11-24 14:00:48] 2025-11-24 12:59:59,283 | INFO     | sum of deviations: 1285958857434.2634
[2025-11-24 14:00:48] 2025-11-24 12:59:59,284 | INFO     | mean x: 1763951724.6914191
[2025-11-24 14:00:48] 2025-11-24 12:59:59,284 | INFO     | mean y: 2844424.6798679866
[2025-11-24 14:00:48] 2025-11-24 12:59:59,284 | INFO     | intersect: -4106191355.6660233
[2025-11-24 14:00:48] 2025-11-24 12:59:59,286 | INFO     | chi2: 12.534928348476738
[2025-11-24 14:00:48] 2025-11-24 12:59:59,286 | INFO     | current memory leak: 2.33 B/s (using 1212 data points, chi2=12.53)
[2025-11-24 14:00:48] 2025-11-24 12:59:59,288 | INFO     | could have reported an average CPU frequency of 1999 MHz (42 samples)
[2025-11-24 14:00:48] 2025-11-24 12:59:59,288 | INFO     | ..............................
[2025-11-24 14:00:48] 2025-11-24 12:59:59,288 | INFO     | . Timing measurements:
[2025-11-24 14:00:48] 2025-11-24 12:59:59,288 | INFO     | . get job = 0 s
[2025-11-24 14:00:48] 2025-11-24 12:59:59,288 | INFO     | . initial setup = 3 s
[2025-11-24 14:00:48] 2025-11-24 12:59:59,288 | INFO     | . payload setup = 152 s
[2025-11-24 14:00:48] 2025-11-24 12:59:59,289 | INFO     | . stage-in = 0 s
[2025-11-24 14:00:48] 2025-11-24 12:59:59,289 | INFO     | . payload execution = 75053 s
[2025-11-24 14:00:48] 2025-11-24 12:59:59,289 | INFO     | . stage-out = 6 s
[2025-11-24 14:00:48] 2025-11-24 12:59:59,289 | INFO     | . log creation = 2 s
[2025-11-24 14:00:48] 2025-11-24 12:59:59,289 | INFO     | ..............................
[2025-11-24 14:00:48] 2025-11-24 12:59:59,443 | INFO     | 
[2025-11-24 14:00:48] 2025-11-24 12:59:59,443 | INFO     | job summary report
[2025-11-24 14:00:48] 2025-11-24 12:59:59,443 | INFO     | --------------------------------------------------
[2025-11-24 14:00:48] 2025-11-24 12:59:59,443 | INFO     | PanDA job id: 6893852667
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | task id: 47523449
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | errors: (none)
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | pilot state: finished 
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | transexitcode: 0
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | exeerrorcode: 0
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | exeerrordiag: 
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | exitcode: 0
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | exitmsg: OK
[2025-11-24 14:00:48] 2025-11-24 12:59:59,444 | INFO     | cpuconsumptiontime: 335229 s
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | nevents: 1000
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | neventsw: 0
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | pid: 10179
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | pgrp: 10179
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | corecount: 8
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | event service: False
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | sizes: {0: 2298636, 1: 2298835, 12: 2298835, 23: 2298863, 34: 2298891, 44: 2298919, 55: 2299075, 66: 2299103, 77: 2299131, 87: 2299187, 89: 2299477, 98: 2299785, 7
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | --------------------------------------------------
[2025-11-24 14:00:48] 2025-11-24 12:59:59,445 | INFO     | 
[2025-11-24 14:00:48] 2025-11-24 12:59:59,446 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-24 14:00:48] 2025-11-24 13:00:00,075 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,076 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,076 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,076 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,076 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,076 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,077 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,077 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,077 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,077 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,077 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,077 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,077 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,077 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,078 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 14:00:48] 2025-11-24 13:00:00,078 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,078 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 14:00:48] 2025-11-24 13:00:00,078 | INFO     | job 6893852667 has completed (purged errors)
[2025-11-24 14:00:48] 2025-11-24 13:00:00,078 | INFO     | overall cleanup function is called
[2025-11-24 14:00:48] 2025-11-24 13:00:01,106 | INFO     | --- collectZombieJob: --- 10, [10179]
[2025-11-24 14:00:48] 2025-11-24 13:00:01,107 | INFO     | zombie collector waiting for pid 10179
[2025-11-24 14:00:48] 2025-11-24 13:00:01,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 14:00:48] 2025-11-24 13:00:01,107 | INFO     | collected zombie processes
[2025-11-24 14:00:48] 2025-11-24 13:00:01,107 | INFO     | will attempt to kill all subprocesses of pid=10179
[2025-11-24 14:00:48] 2025-11-24 13:00:01,186 | INFO     | process IDs to be killed: [10179] (in reverse order)
[2025-11-24 14:00:48] 2025-11-24 13:00:02,065 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 14:00:48] 2025-11-24 13:00:02,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 14:00:48] 2025-11-24 13:00:02,068 | INFO     | did not find any defunct processes belonging to 10179
[2025-11-24 14:00:48] 2025-11-24 13:00:02,069 | INFO     | did not find any defunct processes belonging to 10179
[2025-11-24 14:00:48] 2025-11-24 13:00:02,118 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 14:00:48] 2025-11-24 13:00:02,118 | INFO     | ready for new job
[2025-11-24 14:00:48] 2025-11-24 13:00:02,118 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 14:00:48] 2025-11-24 13:00:02,124 | INFO     | ***************************************
[2025-11-24 14:00:48] 2025-11-24 13:00:02,124 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 14:00:48] 2025-11-24 13:00:02,124 | INFO     | ***************************************
[2025-11-24 14:00:48] 2025-11-24 13:00:02,124 | INFO     | 
[2025-11-24 14:00:48] 2025-11-24 13:00:02,125 | INFO     | pilot is running in a VM
[2025-11-24 14:00:48] 2025-11-24 13:00:02,125 | INFO     | architecture information:
[2025-11-24 14:00:48] 2025-11-24 13:00:02,129 | INFO     | executing command: cat /etc/os-release
[2025-11-24 14:00:48] 2025-11-24 13:00:02,402 | INFO     | cat /etc/os-release:
[2025-11-24 14:00:48] NAME="CentOS Linux"
[2025-11-24 14:00:48] VERSION="7 (Core)"
[2025-11-24 14:00:48] ID="centos"
[2025-11-24 14:00:48] ID_LIKE="rhel fedora"
[2025-11-24 14:00:48] VERSION_ID="7"
[2025-11-24 14:00:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 14:00:48] ANSI_COLOR="0;31"
[2025-11-24 14:00:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 14:00:48] HOME_URL="https://www.centos.org/"
[2025-11-24 14:00:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 14:00:48] 
[2025-11-24 14:00:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 14:00:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 14:00:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 14:00:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 14:00:48] 
[2025-11-24 14:00:48] 2025-11-24 13:00:02,402 | INFO     | ***************************************
[2025-11-24 14:00:48] 2025-11-24 13:00:02,906 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-24 14:00:48] 2025-11-24 13:00:03,089 | INFO     | sufficient remaining disk space (495330525184 B)
[2025-11-24 14:00:48] 2025-11-24 13:00:03,090 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 14:00:48] 2025-11-24 13:00:03,090 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 14:00:48] 2025-11-24 13:00:03,090 | INFO     | update_server=False
[2025-11-24 14:00:48] 2025-11-24 13:00:03,090 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 14:00:48] 2025-11-24 13:00:03,091 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 14:00:48] 2025-11-24 13:00:03,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:00:48] 2025-11-24 13:00:03,092 | INFO     | aborting loop
[2025-11-24 14:00:48] 2025-11-24 13:00:03,398 | INFO     | all job control threads have been joined
[2025-11-24 14:00:48] 2025-11-24 13:00:03,571 | INFO     | all payload control threads have been joined
[2025-11-24 14:00:48] 2025-11-24 13:00:03,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 14:00:48] 2025-11-24 13:00:04,097 | INFO     | [job] retrieve thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:04,098 | INFO     | [job] job monitor thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:04,137 | INFO     | all data control threads have been joined
[2025-11-24 14:00:48] 2025-11-24 13:00:04,319 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:04,374 | INFO     | [job] validate thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:04,404 | INFO     | [job] control thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:04,458 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 14:00:48] 2025-11-24 13:00:04,548 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:04,577 | INFO     | [payload] control thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:04,594 | INFO     | [payload] failed_post thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:04,931 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:05,143 | INFO     | [data] control thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:05,184 | INFO     | [payload] validate_post thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:05,240 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:05,409 | INFO     | [data] copytool_in thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:05,464 | INFO     | [job] queue monitor thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:05,762 | INFO     | [data] copytool_out thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:07,100 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 14:00:48] 2025-11-24 13:00:31,272 | INFO     | PID=3535 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 14:00:48] 2025-11-24 13:00:31,272 | INFO     | .. there are 2 such processes running
[2025-11-24 14:00:48] 2025-11-24 13:00:31,272 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 14:00:48] 2025-11-24 13:00:31,272 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 14:00:48] 2025-11-24 13:00:31,272 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 14:00:48] 2025-11-24 13:00:37,948 | INFO     | [monitor] cgroup control has ended
[2025-11-24 14:00:48] 2025-11-24 13:00:38,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195905443648)>', '<ExcThread(monitor, started 140195173230336)>']
[2025-11-24 14:00:48] 2025-11-24 13:00:39,321 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 14:00:48] 2025-11-24 13:00:39,322 | INFO     | [monitor] control thread has ended
[2025-11-24 14:00:48] 2025-11-24 13:00:43,633 | INFO     | all workflow threads have been joined
[2025-11-24 14:00:48] 2025-11-24 13:00:43,634 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 14:00:48] 2025-11-24 13:00:43,634 | INFO     | traces error code: 0
[2025-11-24 14:00:48] 2025-11-24 13:00:43,634 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 14:00:48] 2025-11-24 13:00:43,995 [wrapper] ==== pilot stdout END ====
[2025-11-24 14:00:48] 2025-11-24 13:00:44,094 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 14:00:48] 2025-11-24 13:00:44,214 [wrapper] pilotpid: 3535
[2025-11-24 14:00:48] 2025-11-24 13:00:44,325 [wrapper] Pilot exit status: 0
[2025-11-24 14:00:48] 2025-11-24 13:00:44,687 [wrapper] pandaids: 6893852667
[2025-11-24 14:00:48] 2025-11-24 13:00:45,301 [wrapper] cleanup supervisor_pilot 27759 3536
[2025-11-24 14:00:48] 2025-11-24 13:00:45,409 [wrapper] Test setup, not cleaning
[2025-11-24 14:00:48] 2025-11-24 13:00:45,495 [wrapper] apfmon messages muted
[2025-11-24 14:00:48] 2025-11-24 13:00:45,554 [wrapper] ==== wrapper stdout END ====
[2025-11-24 14:00:48] 2025-11-24 13:00:45,613 [wrapper] ==== wrapper stderr END ====
[2025-11-24 14:00:48]  *** Error codes and diagnostics ***
[2025-11-24 14:00:48]     "exeErrorCode": 0,
[2025-11-24 14:00:48]     "exeErrorDiag": "",
[2025-11-24 14:00:48]     "pilotErrorCode": 0,
[2025-11-24 14:00:48]     "pilotErrorDiag": "",
[2025-11-24 14:00:48]  *** Listing of results directory ***
[2025-11-24 14:00:48] total 1330532
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:54 pilot3.tar.gz
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc      5112 Nov 20 13:06 queuedata.json
[2025-11-24 14:00:48] -rwx------. 1 boinc boinc     36292 Nov 20 13:06 runpilot2-wrapper.sh
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc       100 Nov 23 16:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 14:00:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 16:57 run_atlas
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc       105 Nov 23 16:57 job.xml
[2025-11-24 14:00:48] -rw-r--r--. 2 boinc boinc 410637242 Nov 23 16:57 EVNT.47493127._000394.pool.root.1
[2025-11-24 14:00:48] -rw-r--r--. 2 boinc boinc    590106 Nov 23 16:57 input.tar.gz
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc      6390 Nov 23 16:57 init_data.xml
[2025-11-24 14:00:48] -rw-r--r--. 2 boinc boinc     15847 Nov 23 16:57 start_atlas.sh
[2025-11-24 14:00:48] drwxrwx--x. 2 boinc boinc        68 Nov 23 16:57 shared
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc         0 Nov 23 16:57 boinc_lockfile
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc      2786 Nov 23 16:57 pandaJob.out
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc    989785 Nov 23 17:01 agis_schedconf.cvmfs.json
[2025-11-24 14:00:48] drwx------. 5 boinc boinc      4096 Nov 23 17:01 pilot3
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc       533 Nov 24 13:32 boinc_task_state.xml
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc 923119882 Nov 24 13:56 HITS.47523449._003938.pool.root.1
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc      1033 Nov 24 13:57 memory_monitor_summary.json
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc   1516227 Nov 24 13:58 agis_ddmendpoints.agis.ALL.json
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc   2351196 Nov 24 13:58 log.47523449._003938.job.log.tgz.1
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc        95 Nov 24 13:59 pilot_heartbeat.json
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc      8630 Nov 24 13:59 heartbeat.json
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc      8192 Nov 24 14:00 boinc_mmap_file
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc        29 Nov 24 14:00 wrapper_checkpoint.txt
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc      4883 Nov 24 14:00 pilotlog.txt
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc  10047219 Nov 24 14:00 log.47523449._003938.job.log.1
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc       353 Nov 24 14:00 output.list
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc       620 Nov 24 14:00 runtime_log
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc  12421120 Nov 24 14:00 result.tar.gz
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc      8817 Nov 24 14:00 runtime_log.err
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc       662 Nov 24 14:00 o7mKDmfbIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbiHKDm61lRAo.diag
[2025-11-24 14:00:48] -rw-r--r--. 1 boinc boinc     21519 Nov 24 14:00 stderr.txt
[2025-11-24 14:00:48] HITS file was successfully produced:
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc 923119882 Nov 24 13:56 shared/HITS.pool.root.1
[2025-11-24 14:00:48]  *** Contents of shared directory: ***
[2025-11-24 14:00:48] total 1315232
[2025-11-24 14:00:48] -rw-r--r--. 2 boinc boinc 410637242 Nov 23 16:57 ATLAS.root_0
[2025-11-24 14:00:48] -rw-r--r--. 2 boinc boinc    590106 Nov 23 16:57 input.tar.gz
[2025-11-24 14:00:48] -rw-r--r--. 2 boinc boinc     15847 Nov 23 16:57 start_atlas.sh
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc 923119882 Nov 24 13:56 HITS.pool.root.1
[2025-11-24 14:00:48] -rw-------. 1 boinc boinc  12421120 Nov 24 14:00 result.tar.gz
14:00:49 (32103): run_atlas exited; CPU time 335530.671336
14:00:49 (32103): called boinc_finish(0)

</stderr_txt>
]]>

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