Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:03:31 (4010628): wrapper (7.7.26015): starting
06:03:31 (4010628): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 06:03:31] Arguments: --nthreads 8
[2025-11-20 06:03:31] Threads: 8
[2025-11-20 06:03:31] Checking for CVMFS
[2025-11-20 06:03:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 06:03:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 06:03:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 06:03:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 06:03:32] 2.11.3.0 733561 19841 212184 153083 0 369 42033025 45568001 11959 130560 0 136567468 99.795 92431556 21799 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2025-11-20 06:03:32] CVMFS is ok
[2025-11-20 06:03:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 06:03:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 06:03:32] Further information can be found at the LHC@home message board.
[2025-11-20 06:03:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 06:03:32] Checking for apptainer binary...
[2025-11-20 06:03:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 06:03:32] Running /usr/bin/apptainer --version
[2025-11-20 06:03:32] apptainer version 1.4.1-1.el9
[2025-11-20 06:03:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 06:03:32] wns0024.triumf.lcg
[2025-11-20 06:03:32] apptainer works
[2025-11-20 06:03:32] Set ATHENA_PROC_NUMBER=8
[2025-11-20 06:03:32] Set ATHENA_CORE_NUMBER=8
[2025-11-20 06:03:32] Starting ATLAS job with PandaID=6893852650
[2025-11-20 06:03:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 06:12:56]  *** The last 200 lines of the pilot log: ***
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . Timing measurements:
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . get job = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . initial setup = 3 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . payload setup = 8 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . stage-in = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . payload execution = 330 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . stage-out = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . log creation = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | ..............................
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 06:12:56] 2025-11-20 14:11:57,381 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893852650/pilotlog.txt
[2025-11-20 06:12:56] 2025-11-20 14:11:57,434 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 06:12:56] - Log from pilotlog.txt -
[2025-11-20 06:12:56] 2025-11-20 14:11:57,377 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893852650/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 06:12:56] 2025-11-20 14:11:57,377 | INFO     | extracted standard info from prmon json
[2025-11-20 06:12:56] 2025-11-20 14:11:57,377 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 06:12:56] 2025-11-20 14:11:57,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 06:12:56] 2025-11-20 14:11:57,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 06:12:56] 2025-11-20 14:11:57,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 06:12:56] 2025-11-20 14:11:57,379 | WARNING  | wrong length of table data, x=[1763647460.0, 1763647521.0, 1763647582.0, 1763647643.0, 1763647704.0, 1763647765.0], y=[2082.0, 568741.0, 788263.0, 931618.0, 446038
[2025-11-20 06:12:56] 2025-11-20 14:11:57,379 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | ..............................
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . Timing measurements:
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . get job = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . initial setup = 3 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . payload setup = 8 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . stage-in = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . payload execution = 330 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . stage-out = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . log creation = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | ..............................
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 06:12:56] 2025-11-20 14:11:57,381 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893852650/pilotlog.txt
[2025-11-20 06:12:56] 2025-11-20 14:11:57,434 | WARNING  | 
[2025-11-20 06:12:56] [begin log extracts]
[2025-11-20 06:12:56] - Log from pilotlog.txt -
[2025-11-20 06:12:56] 2025-11-20 14:11:57,377 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893852650/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 06:12:56] 2025-11-20 14:11:57,377 | INFO     | extracted standard info from prmon json
[2025-11-20 06:12:56] 2025-11-20 14:11:57,377 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 06:12:56] 2025-11-20 14:11:57,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 06:12:56] 2025-11-20 14:11:57,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 06:12:56] 2025-11-20 14:11:57,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 06:12:56] 2025-11-20 14:11:57,379 | WARNING  | wrong length of table data, x=[1763647460.0, 1763647521.0, 1763647582.0, 1763647643.0, 1763647704.0, 1763647765.0], y=[2082.0, 568741.0, 788263.0, 931618.0, 446038
[2025-11-20 06:12:56] 2025-11-20 14:11:57,379 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | ..............................
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . Timing measurements:
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . get job = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . initial setup = 3 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . payload setup = 8 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . stage-in = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . payload execution = 330 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . stage-out = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | . log creation = 0 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | ..............................
[2025-11-20 06:12:56] 2025-11-20 14:11:57,380 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 06:12:56] 2025-11-20 14:11:57,381 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893852650/pilotlog.txt
[2025-11-20 06:12:56] [end log extracts]
[2025-11-20 06:12:56] 2025-11-20 14:11:57,434 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 06:12:56] 2025-11-20 14:11:57,435 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 06:12:56] 2025-11-20 14:11:57,588 | INFO     | time since job start (491s) is within the limit (172800.0s)
[2025-11-20 06:12:56] 2025-11-20 14:11:57,977 | INFO     | 
[2025-11-20 06:12:56] 2025-11-20 14:11:57,978 | INFO     | job summary report
[2025-11-20 06:12:56] 2025-11-20 14:11:57,978 | INFO     | --------------------------------------------------
[2025-11-20 06:12:56] 2025-11-20 14:11:57,978 | INFO     | PanDA job id: 6893852650
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | task id: 47523449
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 06:09:38,605 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | pilot state: failed 
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | transexitcode: 65
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | exeerrorcode: 65
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | exitcode: 65
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | cpuconsumptiontime: 59 s
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | nevents: 0
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | neventsw: 0
[2025-11-20 06:12:56] 2025-11-20 14:11:57,979 | INFO     | pid: 4028746
[2025-11-20 06:12:56] 2025-11-20 14:11:57,980 | INFO     | pgrp: 4028746
[2025-11-20 06:12:56] 2025-11-20 14:11:57,980 | INFO     | corecount: 8
[2025-11-20 06:12:56] 2025-11-20 14:11:57,980 | INFO     | event service: False
[2025-11-20 06:12:56] 2025-11-20 14:11:57,980 | INFO     | sizes: {0: 2297973, 1: 2298826, 6: 2299088, 12: 2299116, 342: 2324617, 343: 2328907, 346: 2329091, 473: 2329285}
[2025-11-20 06:12:56] 2025-11-20 14:11:57,980 | INFO     | --------------------------------------------------
[2025-11-20 06:12:56] 2025-11-20 14:11:57,980 | INFO     | 
[2025-11-20 06:12:56] 2025-11-20 14:11:57,980 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 06:12:56] 2025-11-20 14:11:58,048 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,049 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | job 6893852650 has completed (purged errors)
[2025-11-20 06:12:56] 2025-11-20 14:11:58,050 | INFO     | overall cleanup function is called
[2025-11-20 06:12:56] 2025-11-20 14:11:59,087 | INFO     | --- collectZombieJob: --- 10, [4028746]
[2025-11-20 06:12:56] 2025-11-20 14:11:59,087 | INFO     | zombie collector waiting for pid 4028746
[2025-11-20 06:12:56] 2025-11-20 14:11:59,087 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 06:12:56] 2025-11-20 14:11:59,087 | INFO     | collected zombie processes
[2025-11-20 06:12:56] 2025-11-20 14:11:59,088 | INFO     | will attempt to kill all subprocesses of pid=4028746
[2025-11-20 06:12:56] 2025-11-20 14:11:59,905 | INFO     | process IDs to be killed: [4028746] (in reverse order)
[2025-11-20 06:12:56] 2025-11-20 14:12:00,089 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 06:12:56] 2025-11-20 14:12:00,089 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 06:12:56] 2025-11-20 14:12:00,097 | INFO     | did not find any defunct processes belonging to 4028746
[2025-11-20 06:12:56] 2025-11-20 14:12:00,105 | INFO     | did not find any defunct processes belonging to 4028746
[2025-11-20 06:12:56] 2025-11-20 14:12:00,106 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 06:12:56] 2025-11-20 14:12:00,109 | INFO     | ready for new job
[2025-11-20 06:12:56] 2025-11-20 14:12:00,109 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 06:12:56] 2025-11-20 14:12:00,111 | INFO     | ***************************************
[2025-11-20 06:12:56] 2025-11-20 14:12:00,111 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 06:12:56] 2025-11-20 14:12:00,111 | INFO     | ***************************************
[2025-11-20 06:12:56] 2025-11-20 14:12:00,111 | INFO     | 
[2025-11-20 06:12:56] 2025-11-20 14:12:00,112 | INFO     | architecture information:
[2025-11-20 06:12:56] 2025-11-20 14:12:00,128 | INFO     | executing command: cat /etc/os-release
[2025-11-20 06:12:56] 2025-11-20 14:12:00,145 | INFO     | cat /etc/os-release:
[2025-11-20 06:12:56] NAME="CentOS Linux"
[2025-11-20 06:12:56] VERSION="7 (Core)"
[2025-11-20 06:12:56] ID="centos"
[2025-11-20 06:12:56] ID_LIKE="rhel fedora"
[2025-11-20 06:12:56] VERSION_ID="7"
[2025-11-20 06:12:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 06:12:56] ANSI_COLOR="0;31"
[2025-11-20 06:12:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 06:12:56] HOME_URL="https://www.centos.org/"
[2025-11-20 06:12:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 06:12:56] 
[2025-11-20 06:12:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 06:12:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 06:12:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 06:12:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 06:12:56] 
[2025-11-20 06:12:56] 2025-11-20 14:12:00,146 | INFO     | ***************************************
[2025-11-20 06:12:56] 2025-11-20 14:12:00,649 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 06:12:56] 2025-11-20 14:12:00,697 | INFO     | sufficient remaining disk space (1145326010368 B)
[2025-11-20 06:12:56] 2025-11-20 14:12:00,698 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 06:12:56] 2025-11-20 14:12:00,698 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 06:12:56] 2025-11-20 14:12:00,698 | INFO     | update_server=False
[2025-11-20 06:12:56] 2025-11-20 14:12:00,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 06:12:56] 2025-11-20 14:12:00,763 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 06:12:56] 2025-11-20 14:12:00,932 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 06:12:56] 2025-11-20 14:12:00,932 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 06:12:56] 2025-11-20 14:12:00,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 06:12:56] 2025-11-20 14:12:00,932 | INFO     | will abort loop
[2025-11-20 06:12:56] 2025-11-20 14:12:01,098 | INFO     | all data control threads have been joined
[2025-11-20 06:12:56] 2025-11-20 14:12:01,515 | INFO     | all payload control threads have been joined
[2025-11-20 06:12:56] 2025-11-20 14:12:01,704 | INFO     | [job] retrieve thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:01,802 | INFO     | all job control threads have been joined
[2025-11-20 06:12:56] 2025-11-20 14:12:01,938 | INFO     | [job] job monitor thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:01,950 | INFO     | [job] validate thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,104 | INFO     | [data] control thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,327 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 06:12:56] 2025-11-20 14:12:02,389 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,421 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,536 | INFO     | [payload] control thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,634 | INFO     | [payload] validate_post thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,636 | INFO     | [payload] failed_post thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,679 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 06:12:56] 2025-11-20 14:12:02,781 | INFO     | [data] copytool_out thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,808 | INFO     | [job] control thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:02,897 | INFO     | [data] copytool_in thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:03,100 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:03,685 | INFO     | [job] queue monitor thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:06,336 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 06:12:56] 2025-11-20 14:12:29,769 | INFO     | 496s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 06:12:56] 2025-11-20 14:12:31,392 | INFO     | PID=4014294 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 06:12:56] 2025-11-20 14:12:31,392 | INFO     | .. there are 26 such processes running
[2025-11-20 06:12:56] 2025-11-20 14:12:31,392 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 06:12:56] 2025-11-20 14:12:31,392 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 06:12:56] 2025-11-20 14:12:31,392 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 06:12:56] 2025-11-20 14:12:46,943 | INFO     | [monitor] cgroup control has ended
[2025-11-20 06:12:56] 2025-11-20 14:12:48,949 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140327303362368)>', '<ExcThread(monitor, started 140326773712640)>']
[2025-11-20 06:12:56] 2025-11-20 14:12:49,526 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 06:12:56] 2025-11-20 14:12:49,526 | INFO     | [monitor] control thread has ended
[2025-11-20 06:12:56] 2025-11-20 14:12:53,975 | INFO     | all workflow threads have been joined
[2025-11-20 06:12:56] 2025-11-20 14:12:53,975 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 06:12:56] 2025-11-20 14:12:53,976 | INFO     | traces error code: 0
[2025-11-20 06:12:56] 2025-11-20 14:12:53,976 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 06:12:56] 2025-11-20 14:12:54,930 [wrapper] ==== pilot stdout END ====
[2025-11-20 06:12:56] 2025-11-20 14:12:54,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 06:12:56] 2025-11-20 14:12:55,016 [wrapper] pilotpid: 4014294
[2025-11-20 06:12:56] 2025-11-20 14:12:55,047 [wrapper] Pilot exit status: 0
[2025-11-20 06:12:56] 2025-11-20 14:12:55,212 [wrapper] pandaids: 6893852650
[2025-11-20 06:12:56] 2025-11-20 14:12:55,877 [wrapper] cleanup supervisor_pilot 4014300 4014295
[2025-11-20 06:12:56] 2025-11-20 14:12:55,895 [wrapper] Test setup, not cleaning
[2025-11-20 06:12:56] 2025-11-20 14:12:55,917 [wrapper] apfmon messages muted
[2025-11-20 06:12:56] 2025-11-20 14:12:55,955 [wrapper] ==== wrapper stdout END ====
[2025-11-20 06:12:56] 2025-11-20 14:12:55,978 [wrapper] ==== wrapper stderr END ====
[2025-11-20 06:12:56]  *** Error codes and diagnostics ***
[2025-11-20 06:12:56]     "exeErrorCode": 65,
[2025-11-20 06:12:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 06:12:56]     "pilotErrorCode": 1305,
[2025-11-20 06:12:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 06:12:56]  *** Listing of results directory ***
[2025-11-20 06:12:56] total 404708
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc    576529 Nov 20 03:54 pilot3.tar.gz
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc      5112 Nov 20 04:03 queuedata.json
[2025-11-20 06:12:56] -rwx------. 1 boinc boinc     36292 Nov 20 04:03 runpilot2-wrapper.sh
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc       100 Nov 20 06:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 06:12:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 06:03 run_atlas
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc       105 Nov 20 06:03 job.xml
[2025-11-20 06:12:56] -rw-r--r--. 2 boinc boinc 410140158 Nov 20 06:03 EVNT.47493127._000393.pool.root.1
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc      6445 Nov 20 06:03 init_data.xml
[2025-11-20 06:12:56] -rw-r--r--. 2 boinc boinc     15847 Nov 20 06:03 start_atlas.sh
[2025-11-20 06:12:56] drwxrwx--x. 2 boinc boinc      4096 Nov 20 06:03 shared
[2025-11-20 06:12:56] -rw-r--r--. 2 boinc boinc    590102 Nov 20 06:03 input.tar.gz
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc         0 Nov 20 06:03 boinc_lockfile
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc      2783 Nov 20 06:03 pandaJob.out
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc    989448 Nov 20 06:03 agis_schedconf.cvmfs.json
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc   1526164 Nov 20 06:03 agis_ddmendpoints.agis.ALL.json
[2025-11-20 06:12:56] drwx------. 5 boinc boinc      4096 Nov 20 06:03 pilot3
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc       525 Nov 20 06:09 boinc_task_state.xml
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc      1016 Nov 20 06:09 memory_monitor_summary.json
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc     52705 Nov 20 06:09 log.47523449._003921.job.log.tgz.1
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc        95 Nov 20 06:11 pilot_heartbeat.json
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc     10331 Nov 20 06:11 heartbeat.json
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc      8192 Nov 20 06:12 boinc_mmap_file
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc        23 Nov 20 06:12 wrapper_checkpoint.txt
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc      5123 Nov 20 06:12 pilotlog.txt
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc    129000 Nov 20 06:12 log.47523449._003921.job.log.1
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc       186 Nov 20 06:12 output.list
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc       620 Nov 20 06:12 runtime_log
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc    204800 Nov 20 06:12 result.tar.gz
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc      8634 Nov 20 06:12 runtime_log.err
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc       645 Nov 20 06:12 3YRMDmfYIg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqhHKDm7byxGo.diag
[2025-11-20 06:12:56] -rw-r--r--. 1 boinc boinc     22581 Nov 20 06:12 stderr.txt
[2025-11-20 06:12:56] No HITS result produced
[2025-11-20 06:12:56]  *** Contents of shared directory: ***
[2025-11-20 06:12:56] total 401328
[2025-11-20 06:12:56] -rw-r--r--. 2 boinc boinc 410140158 Nov 20 06:03 ATLAS.root_0
[2025-11-20 06:12:56] -rw-r--r--. 2 boinc boinc     15847 Nov 20 06:03 start_atlas.sh
[2025-11-20 06:12:56] -rw-r--r--. 2 boinc boinc    590102 Nov 20 06:03 input.tar.gz
[2025-11-20 06:12:56] -rw-------. 1 boinc boinc    204800 Nov 20 06:12 result.tar.gz
06:12:58 (4010628): run_atlas exited; CPU time 62.967019
06:12:58 (4010628): called boinc_finish(0)

</stderr_txt>
]]>

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