Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:51:30 (15896): wrapper (7.7.26015): starting
02:51:30 (15896): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 02:51:30] Arguments: --nthreads 8
[2025-11-23 02:51:30] Threads: 8
[2025-11-23 02:51:30] Checking for CVMFS
[2025-11-23 02:51:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:51:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:51:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:51:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:51:32] 2.11.2.0 7869 280264 140248 153192 3 230 18069167 25165825 4364 130560 2 136028872 99.885 73200000 2842 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 02:51:32] CVMFS is ok
[2025-11-23 02:51:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:51:32] Checking for apptainer binary...
[2025-11-23 02:51:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:51:32] Running /usr/bin/apptainer --version
[2025-11-23 02:51:32] apptainer version 1.3.2-1.el7
[2025-11-23 02:51:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:51:35] cg-vwn276.simple-grid.lan
[2025-11-23 02:51:35] apptainer works
[2025-11-23 02:51:35] Set ATHENA_PROC_NUMBER=8
[2025-11-23 02:51:35] Set ATHENA_CORE_NUMBER=8
[2025-11-23 02:51:35] Starting ATLAS job with PandaID=6893840216
[2025-11-23 02:51:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:09:52]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:09:52] 2025-11-24 04:09:02,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:09:52] 2025-11-24 04:09:04,032 | INFO     | time since job start (94506s) is within the limit (172800.0s)
[2025-11-24 05:09:52] 2025-11-24 04:09:05,332 | INFO     | monitor loop #6347: job 0:6893840216 is in state 'finished'
[2025-11-24 05:09:52] 2025-11-24 04:09:05,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:09:52] 2025-11-24 04:09:06,040 | INFO     | time since job start (94508s) is within the limit (172800.0s)
[2025-11-24 05:09:52] 2025-11-24 04:09:07,837 | INFO     | monitor loop #6348: job 0:6893840216 is in state 'finished'
[2025-11-24 05:09:52] 2025-11-24 04:09:07,837 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:09:52] 2025-11-24 04:09:08,050 | INFO     | time since job start (94510s) is within the limit (172800.0s)
[2025-11-24 05:09:52] 2025-11-24 04:09:10,065 | INFO     | time since job start (94512s) is within the limit (172800.0s)
[2025-11-24 05:09:52] 2025-11-24 04:09:10,343 | INFO     | monitor loop #6349: job 0:6893840216 is in state 'finished'
[2025-11-24 05:09:52] 2025-11-24 04:09:10,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:09:52] 2025-11-24 04:09:12,073 | INFO     | time since job start (94514s) is within the limit (172800.0s)
[2025-11-24 05:09:52] 2025-11-24 04:09:12,849 | INFO     | monitor loop #6350: job 0:6893840216 is in state 'finished'
[2025-11-24 05:09:52] 2025-11-24 04:09:12,849 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,279 | INFO     | PID=19661 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 05:09:52] 2025-11-24 04:09:13,279 | INFO     | .. there are 9 such processes running
[2025-11-24 05:09:52] 2025-11-24 04:09:13,441 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 05:09:52] 2025-11-24 04:09:13,443 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 05:09:52] 2025-11-24 04:09:13,445 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893840216/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,446 | INFO     | extracted standard info from prmon json
[2025-11-24 05:09:52] 2025-11-24 04:09:13,446 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:09:52] 2025-11-24 04:09:13,446 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:09:52] 2025-11-24 04:09:13,477 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:09:52] 2025-11-24 04:09:13,480 | INFO     | sum of square deviations: 1130300985260.9941
[2025-11-24 05:09:52] 2025-11-24 04:09:13,560 | INFO     | sum of deviations: 4332786499965.2876
[2025-11-24 05:09:52] 2025-11-24 04:09:13,560 | INFO     | mean x: 1763910283.3352826
[2025-11-24 05:09:52] 2025-11-24 04:09:13,561 | INFO     | mean y: 2848224.3482781025
[2025-11-24 05:09:52] 2025-11-24 04:09:13,561 | INFO     | intersect: -6758754890.613459
[2025-11-24 05:09:52] 2025-11-24 04:09:13,563 | INFO     | chi2: 22.69660167228436
[2025-11-24 05:09:52] 2025-11-24 04:09:13,565 | INFO     | sum of square deviations: 1119320782884.551
[2025-11-24 05:09:52] 2025-11-24 04:09:13,633 | INFO     | sum of deviations: 4831908857024.929
[2025-11-24 05:09:52] 2025-11-24 04:09:13,634 | INFO     | mean x: 1763910130.839635
[2025-11-24 05:09:52] 2025-11-24 04:09:13,634 | INFO     | mean y: 2855155.4387222948
[2025-11-24 05:09:52] 2025-11-24 04:09:13,634 | INFO     | intersect: -7611631338.983063
[2025-11-24 05:09:52] 2025-11-24 04:09:13,636 | INFO     | chi2: 19.654267988281834
[2025-11-24 05:09:52] 2025-11-24 04:09:13,636 | INFO     | current chi2=19.654267988281834 (change=13.404357744523615 %)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,636 | INFO     | right removable region: 1533
[2025-11-24 05:09:52] 2025-11-24 04:09:13,638 | INFO     | sum of square deviations: 1119319529334.551
[2025-11-24 05:09:52] 2025-11-24 04:09:13,705 | INFO     | sum of deviations: 3692766179075.222
[2025-11-24 05:09:52] 2025-11-24 04:09:13,706 | INFO     | mean x: 1763910435.839635
[2025-11-24 05:09:52] 2025-11-24 04:09:13,706 | INFO     | mean y: 2857111.9602346807
[2025-11-24 05:09:52] 2025-11-24 04:09:13,706 | INFO     | intersect: -5816489937.455509
[2025-11-24 05:09:52] 2025-11-24 04:09:13,708 | INFO     | chi2: 18.062356227299915
[2025-11-24 05:09:52] 2025-11-24 04:09:13,708 | INFO     | current chi2=18.062356227299915 (change=20.418234905375673 %)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,709 | INFO     | left removable region: 10
[2025-11-24 05:09:52] 2025-11-24 04:09:13,711 | INFO     | sum of square deviations: 1095412655724.1656
[2025-11-24 05:09:52] 2025-11-24 04:09:13,788 | INFO     | sum of deviations: 3785753794311.921
[2025-11-24 05:09:52] 2025-11-24 04:09:13,789 | INFO     | mean x: 1763910405.3493106
[2025-11-24 05:09:52] 2025-11-24 04:09:13,789 | INFO     | mean y: 2872906.729481287
[2025-11-24 05:09:52] 2025-11-24 04:09:13,789 | INFO     | intersect: -6093213782.594785
[2025-11-24 05:09:52] 2025-11-24 04:09:13,791 | INFO     | chi2: 11.346884204101318
[2025-11-24 05:09:52] 2025-11-24 04:09:13,791 | INFO     | current memory leak: 3.46 B/s (using 1523 data points, chi2=11.35)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,794 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,794 | INFO     | ..............................
[2025-11-24 05:09:52] 2025-11-24 04:09:13,794 | INFO     | . Timing measurements:
[2025-11-24 05:09:52] 2025-11-24 04:09:13,794 | INFO     | . get job = 0 s
[2025-11-24 05:09:52] 2025-11-24 04:09:13,795 | INFO     | . initial setup = 9 s
[2025-11-24 05:09:52] 2025-11-24 04:09:13,795 | INFO     | . payload setup = 172 s
[2025-11-24 05:09:52] 2025-11-24 04:09:13,795 | INFO     | . stage-in = 0 s
[2025-11-24 05:09:52] 2025-11-24 04:09:13,795 | INFO     | . payload execution = 94015 s
[2025-11-24 05:09:52] 2025-11-24 04:09:13,795 | INFO     | . stage-out = 6 s
[2025-11-24 05:09:52] 2025-11-24 04:09:13,795 | INFO     | . log creation = 2 s
[2025-11-24 05:09:52] 2025-11-24 04:09:13,795 | INFO     | ..............................
[2025-11-24 05:09:52] 2025-11-24 04:09:13,930 | INFO     | 
[2025-11-24 05:09:52] 2025-11-24 04:09:13,930 | INFO     | job summary report
[2025-11-24 05:09:52] 2025-11-24 04:09:13,930 | INFO     | --------------------------------------------------
[2025-11-24 05:09:52] 2025-11-24 04:09:13,930 | INFO     | PanDA job id: 6893840216
[2025-11-24 05:09:52] 2025-11-24 04:09:13,930 | INFO     | task id: 47523449
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | errors: (none)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | pilot state: finished 
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | transexitcode: 0
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | exeerrorcode: 0
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | exeerrordiag: 
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | exitcode: 0
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | exitmsg: OK
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | cpuconsumptiontime: 347543 s
[2025-11-24 05:09:52] 2025-11-24 04:09:13,931 | INFO     | nevents: 1000
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | neventsw: 0
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | pid: 26211
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | pgrp: 26211
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | corecount: 8
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | event service: False
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298863, 13: 2298863, 24: 2298919, 34: 2298947, 45: 2299103, 56: 2299131, 67: 2299159, 77: 2299187, 88: 2299243, 99: 2299551, 10
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | --------------------------------------------------
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | 
[2025-11-24 05:09:52] 2025-11-24 04:09:13,932 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-24 05:09:52] 2025-11-24 04:09:13,960 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,960 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,961 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,962 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,962 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,962 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,962 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,962 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,962 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,962 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:09:52] 2025-11-24 04:09:13,962 | INFO     | job 6893840216 has completed (purged errors)
[2025-11-24 05:09:52] 2025-11-24 04:09:13,963 | INFO     | overall cleanup function is called
[2025-11-24 05:09:52] 2025-11-24 04:09:14,983 | INFO     | --- collectZombieJob: --- 10, [26211]
[2025-11-24 05:09:52] 2025-11-24 04:09:14,983 | INFO     | zombie collector waiting for pid 26211
[2025-11-24 05:09:52] 2025-11-24 04:09:14,983 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:09:52] 2025-11-24 04:09:14,983 | INFO     | collected zombie processes
[2025-11-24 05:09:52] 2025-11-24 04:09:14,983 | INFO     | will attempt to kill all subprocesses of pid=26211
[2025-11-24 05:09:52] 2025-11-24 04:09:15,095 | INFO     | process IDs to be killed: [26211] (in reverse order)
[2025-11-24 05:09:52] 2025-11-24 04:09:15,970 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:09:52] 2025-11-24 04:09:15,971 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:09:52] 2025-11-24 04:09:15,975 | INFO     | did not find any defunct processes belonging to 26211
[2025-11-24 05:09:52] 2025-11-24 04:09:15,978 | INFO     | did not find any defunct processes belonging to 26211
[2025-11-24 05:09:52] 2025-11-24 04:09:16,038 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:09:52] 2025-11-24 04:09:16,038 | INFO     | ready for new job
[2025-11-24 05:09:52] 2025-11-24 04:09:16,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:09:52] 2025-11-24 04:09:16,049 | INFO     | ***************************************
[2025-11-24 05:09:52] 2025-11-24 04:09:16,050 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:09:52] 2025-11-24 04:09:16,050 | INFO     | ***************************************
[2025-11-24 05:09:52] 2025-11-24 04:09:16,050 | INFO     | 
[2025-11-24 05:09:52] 2025-11-24 04:09:16,051 | INFO     | pilot is running in a VM
[2025-11-24 05:09:52] 2025-11-24 04:09:16,051 | INFO     | architecture information:
[2025-11-24 05:09:52] 2025-11-24 04:09:16,062 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:09:52] 2025-11-24 04:09:16,477 | INFO     | cat /etc/os-release:
[2025-11-24 05:09:52] NAME="CentOS Linux"
[2025-11-24 05:09:52] VERSION="7 (Core)"
[2025-11-24 05:09:52] ID="centos"
[2025-11-24 05:09:52] ID_LIKE="rhel fedora"
[2025-11-24 05:09:52] VERSION_ID="7"
[2025-11-24 05:09:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:09:52] ANSI_COLOR="0;31"
[2025-11-24 05:09:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:09:52] HOME_URL="https://www.centos.org/"
[2025-11-24 05:09:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:09:52] 
[2025-11-24 05:09:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:09:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:09:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:09:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:09:52] 
[2025-11-24 05:09:52] 2025-11-24 04:09:16,478 | INFO     | ***************************************
[2025-11-24 05:09:52] 2025-11-24 04:09:16,981 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-24 05:09:52] 2025-11-24 04:09:17,266 | INFO     | sufficient remaining disk space (495026438144 B)
[2025-11-24 05:09:52] 2025-11-24 04:09:17,267 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:09:52] 2025-11-24 04:09:17,267 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:09:52] 2025-11-24 04:09:17,267 | INFO     | update_server=False
[2025-11-24 05:09:52] 2025-11-24 04:09:17,267 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:09:52] 2025-11-24 04:09:17,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:09:52] 2025-11-24 04:09:17,271 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:09:52] 2025-11-24 04:09:17,272 | INFO     | aborting loop
[2025-11-24 05:09:52] 2025-11-24 04:09:17,675 | INFO     | all data control threads have been joined
[2025-11-24 05:09:52] 2025-11-24 04:09:17,702 | INFO     | all payload control threads have been joined
[2025-11-24 05:09:52] 2025-11-24 04:09:18,026 | INFO     | all job control threads have been joined
[2025-11-24 05:09:52] 2025-11-24 04:09:18,274 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:18,278 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:18,324 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:18,681 | INFO     | [data] control thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:18,708 | INFO     | [payload] control thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:18,762 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:18,763 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:18,915 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:18,945 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:09:52] 2025-11-24 04:09:19,032 | INFO     | [job] control thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:19,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:19,256 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:19,279 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:19,570 | INFO     | [job] validate thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:19,673 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:19,951 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:20,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:09:52] 2025-11-24 04:09:24,222 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:09:52] 2025-11-24 04:09:41,927 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:09:52] 2025-11-24 04:09:42,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961152268096)>', '<ExcThread(monitor, started 139960476747520)>']
[2025-11-24 05:09:52] 2025-11-24 04:09:45,441 | INFO     | PID=19661 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 05:09:52] 2025-11-24 04:09:45,441 | INFO     | .. there are 9 such processes running
[2025-11-24 05:09:52] 2025-11-24 04:09:45,441 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:09:52] 2025-11-24 04:09:45,441 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:09:52] 2025-11-24 04:09:45,441 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:09:52] 2025-11-24 04:09:45,442 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:09:52] 2025-11-24 04:09:45,442 | INFO     | [monitor] control thread has ended
[2025-11-24 05:09:52] 2025-11-24 04:09:47,761 | INFO     | all workflow threads have been joined
[2025-11-24 05:09:52] 2025-11-24 04:09:47,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:09:52] 2025-11-24 04:09:47,761 | INFO     | traces error code: 0
[2025-11-24 05:09:52] 2025-11-24 04:09:47,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:09:52] 2025-11-24 04:09:48,107 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:09:52] 2025-11-24 04:09:48,228 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:09:52] 2025-11-24 04:09:48,350 [wrapper] pilotpid: 19661
[2025-11-24 05:09:52] 2025-11-24 04:09:48,442 [wrapper] Pilot exit status: 0
[2025-11-24 05:09:52] 2025-11-24 04:09:48,843 [wrapper] pandaids: 6893840216
[2025-11-24 05:09:52] 2025-11-24 04:09:49,807 [wrapper] cleanup supervisor_pilot 11682 19662
[2025-11-24 05:09:52] 2025-11-24 04:09:49,825 [wrapper] Test setup, not cleaning
[2025-11-24 05:09:52] 2025-11-24 04:09:49,955 [wrapper] apfmon messages muted
[2025-11-24 05:09:52] 2025-11-24 04:09:50,038 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:09:52] 2025-11-24 04:09:50,169 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:09:52]  *** Error codes and diagnostics ***
[2025-11-24 05:09:52]     "exeErrorCode": 0,
[2025-11-24 05:09:52]     "exeErrorDiag": "",
[2025-11-24 05:09:52]     "pilotErrorCode": 0,
[2025-11-24 05:09:52]     "pilotErrorDiag": "",
[2025-11-24 05:09:52]  *** Listing of results directory ***
[2025-11-24 05:09:52] total 1350656
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 05:09:52] -rwx------. 1 boinc boinc     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:21 queuedata.json
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc       100 Nov 23 02:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:09:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 02:51 run_atlas
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc       105 Nov 23 02:51 job.xml
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc      6390 Nov 23 02:51 init_data.xml
[2025-11-24 05:09:52] -rw-r--r--. 2 boinc boinc 411821415 Nov 23 02:51 EVNT.47493127._000167.pool.root.1
[2025-11-24 05:09:52] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:51 start_atlas.sh
[2025-11-24 05:09:52] drwxrwx--x. 2 boinc boinc        68 Nov 23 02:51 shared
[2025-11-24 05:09:52] -rw-r--r--. 2 boinc boinc    590100 Nov 23 02:51 input.tar.gz
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc         0 Nov 23 02:51 boinc_lockfile
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc      2786 Nov 23 02:51 pandaJob.out
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc    989784 Nov 23 02:53 agis_schedconf.cvmfs.json
[2025-11-24 05:09:52] drwx------. 5 boinc boinc      4096 Nov 23 02:53 pilot3
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc       533 Nov 24 04:44 boinc_task_state.xml
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc 936966234 Nov 24 05:06 HITS.47523449._001666.pool.root.1
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc      1031 Nov 24 05:07 memory_monitor_summary.json
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc   1526164 Nov 24 05:07 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc   2590086 Nov 24 05:07 log.47523449._001666.job.log.tgz.1
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc        95 Nov 24 05:08 pilot_heartbeat.json
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc      7946 Nov 24 05:09 heartbeat.json
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc      8192 Nov 24 05:09 boinc_mmap_file
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc        29 Nov 24 05:09 wrapper_checkpoint.txt
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc      4884 Nov 24 05:09 pilotlog.txt
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc  12597196 Nov 24 05:09 log.47523449._001666.job.log.1
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc       353 Nov 24 05:09 output.list
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc       620 Nov 24 05:09 runtime_log
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc  15206400 Nov 24 05:09 result.tar.gz
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc      8817 Nov 24 05:09 runtime_log.err
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc       662 Nov 24 05:09 djgLDmgwGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxNGKDm9V4gOo.diag
[2025-11-24 05:09:52] -rw-r--r--. 1 boinc boinc     21524 Nov 24 05:09 stderr.txt
[2025-11-24 05:09:52] HITS file was successfully produced:
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc 936966234 Nov 24 05:06 shared/HITS.pool.root.1
[2025-11-24 05:09:52]  *** Contents of shared directory: ***
[2025-11-24 05:09:52] total 1332628
[2025-11-24 05:09:52] -rw-r--r--. 2 boinc boinc 411821415 Nov 23 02:51 ATLAS.root_0
[2025-11-24 05:09:52] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:51 start_atlas.sh
[2025-11-24 05:09:52] -rw-r--r--. 2 boinc boinc    590100 Nov 23 02:51 input.tar.gz
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc 936966234 Nov 24 05:06 HITS.pool.root.1
[2025-11-24 05:09:52] -rw-------. 1 boinc boinc  15206400 Nov 24 05:09 result.tar.gz
05:09:54 (15896): run_atlas exited; CPU time 348082.398611
05:09:54 (15896): called boinc_finish(0)

</stderr_txt>
]]>

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