Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:12:08 (392035): wrapper (7.7.26015): starting
15:12:08 (392035): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 15:12:08] Arguments: --nthreads 3
[2025-11-20 15:12:08] Threads: 3
[2025-11-20 15:12:08] Checking for CVMFS
[2025-11-20 15:12:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 15:12:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 15:12:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 15:12:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 15:12:08] 2.9.2.0 16720 79 59500 153083 1 88 34390828 36864001 0 130560 0 1127620 99.998 4147 7869 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 15:12:08] CVMFS is ok
[2025-11-20 15:12:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 15:12:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 15:12:08] Further information can be found at the LHC@home message board.
[2025-11-20 15:12:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 15:12:08] Checking for apptainer binary...
[2025-11-20 15:12:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 15:12:08] Running /usr/bin/apptainer --version
[2025-11-20 15:12:08] apptainer version 1.4.1-1.1
[2025-11-20 15:12:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 15:12:08] thA335
[2025-11-20 15:12:08] apptainer works
[2025-11-20 15:12:08] Set ATHENA_PROC_NUMBER=3
[2025-11-20 15:12:08] Set ATHENA_CORE_NUMBER=3
[2025-11-20 15:12:08] Starting ATLAS job with PandaID=6893838412
[2025-11-20 15:12:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 15:16:27]  *** The last 200 lines of the pilot log: ***
[2025-11-20 15:16:27] 2025-11-20 14:15:39,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 15:16:27] 2025-11-20 14:15:39,550 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 15:16:27] 2025-11-20 14:15:39,551 | INFO     | update_server=False
[2025-11-20 15:16:27] 2025-11-20 14:15:39,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 15:16:27] 2025-11-20 14:15:39,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 15:16:27] 2025-11-20 14:15:39,551 | INFO     | aborting loop
[2025-11-20 15:16:27] 2025-11-20 14:15:39,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 15:16:27] 2025-11-20 14:15:39,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 15:16:27] 2025-11-20 14:15:40,161 | INFO     | all job control threads have been joined
[2025-11-20 15:16:27] 2025-11-20 14:15:40,246 | INFO     | all data control threads have been joined
[2025-11-20 15:16:27] 2025-11-20 14:15:40,556 | INFO     | [job] retrieve thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:40,557 | INFO     | [job] job monitor thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:40,558 | INFO     | [job] queue monitor thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:40,719 | INFO     | all payload control threads have been joined
[2025-11-20 15:16:27] 2025-11-20 14:15:40,793 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:40,982 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,167 | INFO     | [job] control thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,252 | INFO     | [data] control thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,456 | INFO     | [data] copytool_in thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,468 | INFO     | [payload] failed_post thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,561 | INFO     | [payload] validate_post thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,637 | INFO     | [job] validate thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,725 | INFO     | [payload] control thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,739 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:41,805 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:42,002 | INFO     | [data] copytool_out thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:15:42,301 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 15:16:27] 2025-11-20 14:15:46,308 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 15:16:27] 2025-11-20 14:16:09,524 | INFO     | PID=395777 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 15:16:27] 2025-11-20 14:16:09,525 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 15:16:27] 2025-11-20 14:16:09,525 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 15:16:27] 2025-11-20 14:16:09,525 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 15:16:27] 2025-11-20 14:16:20,439 | INFO     | [monitor] cgroup control has ended
[2025-11-20 15:16:27] 2025-11-20 14:16:22,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257359103808)>', '<ExcThread(monitor, started 140256636557056)>']
[2025-11-20 15:16:27] 2025-11-20 14:16:22,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 15:16:27] 2025-11-20 14:16:22,595 | INFO     | [monitor] control thread has ended
[2025-11-20 15:16:27] 2025-11-20 14:16:27,197 | INFO     | all workflow threads have been joined
[2025-11-20 15:16:27] 2025-11-20 14:16:27,198 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 15:16:27] 2025-11-20 14:16:27,198 | INFO     | traces error code: 0
[2025-11-20 15:16:27] 2025-11-20 14:16:27,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 15:16:27] 2025-11-20 14:16:27,248 [wrapper] ==== pilot stdout END ====
[2025-11-20 15:16:27] 2025-11-20 14:16:27,251 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 15:16:27] 2025-11-20 14:16:27,254 [wrapper] pilotpid: 395777
[2025-11-20 15:16:27] 2025-11-20 14:16:27,257 [wrapper] Pilot exit status: 0
[2025-11-20 15:16:27] 2025-11-20 14:16:27,265 [wrapper] pandaids: 6893838412
[2025-11-20 15:16:27] 2025-11-20 14:16:27,283 [wrapper] cleanup supervisor_pilot  395783 395778
[2025-11-20 15:16:27] 2025-11-20 14:16:27,286 [wrapper] Test setup, not cleaning
[2025-11-20 15:16:27] 2025-11-20 14:16:27,289 [wrapper] apfmon messages muted
[2025-11-20 15:16:27] 2025-11-20 14:16:27,292 [wrapper] ==== wrapper stdout END ====
[2025-11-20 15:16:27] 2025-11-20 14:16:27,294 [wrapper] ==== wrapper stderr END ====
[2025-11-20 15:16:27]  *** Error codes and diagnostics ***
[2025-11-20 15:16:27]     "exeErrorCode": 65,
[2025-11-20 15:16:27]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 15:16:27]     "pilotErrorCode": 1305,
[2025-11-20 15:16:27]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 15:16:27]  *** Listing of results directory ***
[2025-11-20 15:16:27] total 402520
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 15:16:27] -rwx------ 1 boinc boinc     36292 Nov 20 11:14 runpilot2-wrapper.sh
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:15 queuedata.json
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc       100 Nov 20 15:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 15:16:27] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 15:12 run_atlas
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc       105 Nov 20 15:12 job.xml
[2025-11-20 15:16:27] -rw-r--r-- 2 boinc boinc 407976441 Nov 20 15:12 EVNT.47493127._000135.pool.root.1
[2025-11-20 15:16:27] -rw-r--r-- 2 boinc boinc    590104 Nov 20 15:12 input.tar.gz
[2025-11-20 15:16:27] -rw-r--r-- 2 boinc boinc     15847 Nov 20 15:12 start_atlas.sh
[2025-11-20 15:16:27] drwxrwx--x 2 boinc boinc      4096 Nov 20 15:12 shared
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc         0 Nov 20 15:12 boinc_setup_complete
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc      6194 Nov 20 15:12 init_data.xml
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc         0 Nov 20 15:12 boinc_lockfile
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc      2783 Nov 20 15:12 pandaJob.out
[2025-11-20 15:16:27] -rw------- 1 boinc boinc    989448 Nov 20 15:12 agis_schedconf.cvmfs.json
[2025-11-20 15:16:27] -rw------- 1 boinc boinc   1526164 Nov 20 15:12 agis_ddmendpoints.agis.ALL.json
[2025-11-20 15:16:27] drwx------ 5 boinc boinc      4096 Nov 20 15:12 pilot3
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc       523 Nov 20 15:13 boinc_task_state.xml
[2025-11-20 15:16:27] -rw------- 1 boinc boinc       967 Nov 20 15:13 memory_monitor_summary.json
[2025-11-20 15:16:27] -rw------- 1 boinc boinc     55964 Nov 20 15:13 log.47523449._001341.job.log.tgz.1
[2025-11-20 15:16:27] -rw------- 1 boinc boinc        95 Nov 20 15:15 pilot_heartbeat.json
[2025-11-20 15:16:27] -rw------- 1 boinc boinc      8407 Nov 20 15:15 heartbeat.json
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc      8192 Nov 20 15:16 boinc_mmap_file
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc        23 Nov 20 15:16 wrapper_checkpoint.txt
[2025-11-20 15:16:27] -rw------- 1 boinc boinc      4751 Nov 20 15:16 pilotlog.txt
[2025-11-20 15:16:27] -rw------- 1 boinc boinc     93729 Nov 20 15:16 log.47523449._001341.job.log.1
[2025-11-20 15:16:27] -rw------- 1 boinc boinc       186 Nov 20 15:16 output.list
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc       620 Nov 20 15:16 runtime_log
[2025-11-20 15:16:27] -rw------- 1 boinc boinc    174080 Nov 20 15:16 result.tar.gz
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc      8744 Nov 20 15:16 runtime_log.err
[2025-11-20 15:16:27] -rw------- 1 boinc boinc       649 Nov 20 15:16 KcTMDmsrGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEJGKDmn9Ns7n.diag
[2025-11-20 15:16:27] -rw-r--r-- 1 boinc boinc      8010 Nov 20 15:16 stderr.txt
[2025-11-20 15:16:27] No HITS result produced
[2025-11-20 15:16:27]  *** Contents of shared directory: ***
[2025-11-20 15:16:27] total 399188
[2025-11-20 15:16:27] -rw-r--r-- 2 boinc boinc 407976441 Nov 20 15:12 ATLAS.root_0
[2025-11-20 15:16:27] -rw-r--r-- 2 boinc boinc    590104 Nov 20 15:12 input.tar.gz
[2025-11-20 15:16:27] -rw-r--r-- 2 boinc boinc     15847 Nov 20 15:12 start_atlas.sh
[2025-11-20 15:16:27] -rw------- 1 boinc boinc    174080 Nov 20 15:16 result.tar.gz
15:16:28 (392035): run_atlas exited; CPU time 32.183119
15:16:28 (392035): called boinc_finish(0)

</stderr_txt>
]]>

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