Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:54:32 (308707): wrapper (7.7.26015): starting
14:54:32 (308707): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 14:54:32] Arguments: --nthreads 3
[2025-11-20 14:54:32] Threads: 3
[2025-11-20 14:54:32] Checking for CVMFS
[2025-11-20 14:54:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 14:54:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 14:54:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 14:54:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 14:54:32] 2.9.2.0 16720 61 57568 153083 2 88 34390828 36864001 0 130560 0 876991 99.998 4145 8064 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 14:54:32] CVMFS is ok
[2025-11-20 14:54:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 14:54:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 14:54:32] Further information can be found at the LHC@home message board.
[2025-11-20 14:54:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 14:54:32] Checking for apptainer binary...
[2025-11-20 14:54:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 14:54:32] Running /usr/bin/apptainer --version
[2025-11-20 14:54:32] apptainer version 1.4.1-1.1
[2025-11-20 14:54:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 14:54:32] thA335
[2025-11-20 14:54:32] apptainer works
[2025-11-20 14:54:32] Set ATHENA_PROC_NUMBER=3
[2025-11-20 14:54:32] Set ATHENA_CORE_NUMBER=3
[2025-11-20 14:54:32] Starting ATLAS job with PandaID=6893836642
[2025-11-20 14:54:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:58:52]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:58:52] 2025-11-20 13:58:04,283 | INFO     | update_server=False
[2025-11-20 14:58:52] 2025-11-20 13:58:04,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:58:52] 2025-11-20 13:58:04,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:58:52] 2025-11-20 13:58:04,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:58:52] 2025-11-20 13:58:04,360 | INFO     | aborting loop
[2025-11-20 14:58:52] 2025-11-20 13:58:05,025 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:58:52] 2025-11-20 13:58:05,140 | INFO     | all job control threads have been joined
[2025-11-20 14:58:52] 2025-11-20 13:58:05,268 | INFO     | all data control threads have been joined
[2025-11-20 14:58:52] 2025-11-20 13:58:05,289 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:05,290 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:05,290 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:05,291 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:05,366 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:05,684 | INFO     | all payload control threads have been joined
[2025-11-20 14:58:52] 2025-11-20 13:58:05,688 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:05,896 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:06,146 | INFO     | [job] control thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:06,271 | INFO     | [data] control thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:06,366 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:06,575 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:06,647 | INFO     | [job] validate thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:06,690 | INFO     | [payload] control thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:06,732 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:07,032 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:07,329 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:58:52] 2025-11-20 13:58:11,337 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:58:52] 2025-11-20 13:58:34,541 | INFO     | PID=312446 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 14:58:52] 2025-11-20 13:58:34,541 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:58:52] 2025-11-20 13:58:34,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:58:52] 2025-11-20 13:58:34,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:58:52] 2025-11-20 13:58:45,399 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:58:52] 2025-11-20 13:58:47,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140144218294080)>', '<ExcThread(monitor, started 140143499405056)>']
[2025-11-20 14:58:52] 2025-11-20 13:58:47,610 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:58:52] 2025-11-20 13:58:47,611 | INFO     | [monitor] control thread has ended
[2025-11-20 14:58:52] 2025-11-20 13:58:52,209 | INFO     | all workflow threads have been joined
[2025-11-20 14:58:52] 2025-11-20 13:58:52,209 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:58:52] 2025-11-20 13:58:52,209 | INFO     | traces error code: 0
[2025-11-20 14:58:52] 2025-11-20 13:58:52,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:58:52] 2025-11-20 13:58:52,252 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:58:52] 2025-11-20 13:58:52,256 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:58:52] 2025-11-20 13:58:52,259 [wrapper] pilotpid: 312446
[2025-11-20 14:58:52] 2025-11-20 13:58:52,262 [wrapper] Pilot exit status: 0
[2025-11-20 14:58:52] 2025-11-20 13:58:52,269 [wrapper] pandaids: 6893836642
[2025-11-20 14:58:52] 2025-11-20 13:58:52,286 [wrapper] cleanup supervisor_pilot  312452 312447
[2025-11-20 14:58:52] 2025-11-20 13:58:52,289 [wrapper] Test setup, not cleaning
[2025-11-20 14:58:52] 2025-11-20 13:58:52,292 [wrapper] apfmon messages muted
[2025-11-20 14:58:52] 2025-11-20 13:58:52,295 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:58:52] 2025-11-20 13:58:52,298 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:58:52]  *** Error codes and diagnostics ***
[2025-11-20 14:58:52]     "exeErrorCode": 65,
[2025-11-20 14:58:52]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 14:58:52]     "pilotErrorCode": 1305,
[2025-11-20 14:58:52]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 14:58:52]  *** Listing of results directory ***
[2025-11-20 14:58:52] total 403408
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 14:58:52] -rwx------ 1 boinc boinc     36292 Nov 20 11:16 runpilot2-wrapper.sh
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:17 queuedata.json
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc       100 Nov 20 14:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:58:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 14:54 run_atlas
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc       105 Nov 20 14:54 job.xml
[2025-11-20 14:58:52] -rw-r--r-- 2 boinc boinc 408884520 Nov 20 14:54 EVNT.47493127._000109.pool.root.1
[2025-11-20 14:58:52] -rw-r--r-- 2 boinc boinc    590097 Nov 20 14:54 input.tar.gz
[2025-11-20 14:58:52] -rw-r--r-- 2 boinc boinc     15847 Nov 20 14:54 start_atlas.sh
[2025-11-20 14:58:52] drwxrwx--x 2 boinc boinc      4096 Nov 20 14:54 shared
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc         0 Nov 20 14:54 boinc_setup_complete
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc      6194 Nov 20 14:54 init_data.xml
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc         0 Nov 20 14:54 boinc_lockfile
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc      2786 Nov 20 14:54 pandaJob.out
[2025-11-20 14:58:52] -rw------- 1 boinc boinc    989448 Nov 20 14:54 agis_schedconf.cvmfs.json
[2025-11-20 14:58:52] -rw------- 1 boinc boinc   1526164 Nov 20 14:54 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:58:52] drwx------ 5 boinc boinc      4096 Nov 20 14:54 pilot3
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc       524 Nov 20 14:55 boinc_task_state.xml
[2025-11-20 14:58:52] -rw------- 1 boinc boinc       951 Nov 20 14:55 memory_monitor_summary.json
[2025-11-20 14:58:52] -rw------- 1 boinc boinc     55953 Nov 20 14:55 log.47523449._001088.job.log.tgz.1
[2025-11-20 14:58:52] -rw------- 1 boinc boinc        95 Nov 20 14:57 pilot_heartbeat.json
[2025-11-20 14:58:52] -rw------- 1 boinc boinc      8423 Nov 20 14:58 heartbeat.json
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc      8192 Nov 20 14:58 boinc_mmap_file
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc        23 Nov 20 14:58 wrapper_checkpoint.txt
[2025-11-20 14:58:52] -rw------- 1 boinc boinc      4751 Nov 20 14:58 pilotlog.txt
[2025-11-20 14:58:52] -rw------- 1 boinc boinc     93851 Nov 20 14:58 log.47523449._001088.job.log.1
[2025-11-20 14:58:52] -rw------- 1 boinc boinc       186 Nov 20 14:58 output.list
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc       620 Nov 20 14:58 runtime_log
[2025-11-20 14:58:52] -rw------- 1 boinc boinc    174080 Nov 20 14:58 result.tar.gz
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc      8744 Nov 20 14:58 runtime_log.err
[2025-11-20 14:58:52] -rw------- 1 boinc boinc       649 Nov 20 14:58 jAdNDmatGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoFHKDmg2Z8Fn.diag
[2025-11-20 14:58:52] -rw-r--r-- 1 boinc boinc      7780 Nov 20 14:58 stderr.txt
[2025-11-20 14:58:52] No HITS result produced
[2025-11-20 14:58:52]  *** Contents of shared directory: ***
[2025-11-20 14:58:52] total 400076
[2025-11-20 14:58:52] -rw-r--r-- 2 boinc boinc 408884520 Nov 20 14:54 ATLAS.root_0
[2025-11-20 14:58:52] -rw-r--r-- 2 boinc boinc    590097 Nov 20 14:54 input.tar.gz
[2025-11-20 14:58:52] -rw-r--r-- 2 boinc boinc     15847 Nov 20 14:54 start_atlas.sh
[2025-11-20 14:58:52] -rw------- 1 boinc boinc    174080 Nov 20 14:58 result.tar.gz
14:58:53 (308707): run_atlas exited; CPU time 32.118990
14:58:53 (308707): called boinc_finish(0)

</stderr_txt>
]]>

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