Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:47:49 (4798): wrapper (7.7.26015): starting
08:47:49 (4798): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 08:47:49] Arguments: --nthreads 8
[2025-11-20 08:47:49] Threads: 8
[2025-11-20 08:47:49] Checking for CVMFS
[2025-11-20 08:47:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 08:47:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 08:47:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 08:47:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 08:47:49] 2.11.2.0 2795 38856 84980 153083 3 82 17647823 20275200 1 130560 0 4239029 99.444 2747341 30841 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 08:47:49] CVMFS is ok
[2025-11-20 08:47:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 08:47:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 08:47:49] Further information can be found at the LHC@home message board.
[2025-11-20 08:47:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 08:47:49] Checking for apptainer binary...
[2025-11-20 08:47:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 08:47:49] Running /usr/bin/apptainer --version
[2025-11-20 08:47:49] apptainer version 1.3.2-1.el7
[2025-11-20 08:47:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 08:47:51] c-204-18.aglt2.org
[2025-11-20 08:47:51] apptainer works
[2025-11-20 08:47:51] Set ATHENA_PROC_NUMBER=8
[2025-11-20 08:47:51] Set ATHENA_CORE_NUMBER=8
[2025-11-20 08:47:51] Starting ATLAS job with PandaID=6893838438
[2025-11-20 08:47:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:09:49]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:09:49] 2025-11-21 02:09:17,323 | INFO     | monitor loop #3262: job 0:6893838438 is in state 'finished'
[2025-11-20 21:09:49] 2025-11-21 02:09:17,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:09:49] 2025-11-21 02:09:17,893 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 21:09:49] 2025-11-21 02:09:17,900 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-20 21:09:49] 2025-11-21 02:09:17,903 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893838438/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 21:09:49] 2025-11-21 02:09:17,904 | INFO     | extracted standard info from prmon json
[2025-11-20 21:09:49] 2025-11-21 02:09:17,904 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 21:09:49] 2025-11-21 02:09:17,904 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 21:09:49] 2025-11-21 02:09:17,916 | INFO     | fitting pss+swap vs Time
[2025-11-20 21:09:49] 2025-11-21 02:09:17,918 | INFO     | sum of square deviations: 120132426486.94016
[2025-11-20 21:09:49] 2025-11-21 02:09:17,929 | INFO     | sum of deviations: 762687398877.0994
[2025-11-20 21:09:49] 2025-11-21 02:09:17,929 | INFO     | mean x: 1763668725.6351166
[2025-11-20 21:09:49] 2025-11-21 02:09:17,929 | INFO     | mean y: 3199317.4101508916
[2025-11-20 21:09:49] 2025-11-21 02:09:17,929 | INFO     | intersect: -11193843414.277014
[2025-11-20 21:09:49] 2025-11-21 02:09:17,930 | INFO     | chi2: 6.909345312312644
[2025-11-20 21:09:49] 2025-11-21 02:09:17,931 | INFO     | sum of square deviations: 117677619344.91017
[2025-11-20 21:09:49] 2025-11-21 02:09:17,941 | INFO     | sum of deviations: 1063754753641.1383
[2025-11-20 21:09:49] 2025-11-21 02:09:17,941 | INFO     | mean x: 1763668573.1395028
[2025-11-20 21:09:49] 2025-11-21 02:09:17,942 | INFO     | mean y: 3218022.9392265193
[2025-11-20 21:09:49] 2025-11-21 02:09:17,942 | INFO     | intersect: -15939582646.963821
[2025-11-20 21:09:49] 2025-11-21 02:09:17,943 | INFO     | chi2: 3.135633829347103
[2025-11-20 21:09:49] 2025-11-21 02:09:17,943 | INFO     | current chi2=3.135633829347103 (change=54.6174972068726 %)
[2025-11-20 21:09:49] 2025-11-21 02:09:17,943 | INFO     | sum of square deviations: 115256487252.8511
[2025-11-20 21:09:49] 2025-11-21 02:09:17,954 | INFO     | sum of deviations: 1165017990901.1755
[2025-11-20 21:09:49] 2025-11-21 02:09:17,954 | INFO     | mean x: 1763668420.64395
[2025-11-20 21:09:49] 2025-11-21 02:09:17,954 | INFO     | mean y: 3224396.8678720444
[2025-11-20 21:09:49] 2025-11-21 02:09:17,955 | INFO     | intersect: -17824018902.04359
[2025-11-20 21:09:49] 2025-11-21 02:09:17,956 | INFO     | chi2: 2.5906510237486393
[2025-11-20 21:09:49] 2025-11-21 02:09:17,956 | INFO     | current chi2=2.5906510237486393 (change=17.38030762705284 %)
[2025-11-20 21:09:49] 2025-11-21 02:09:17,956 | INFO     | right removable region: 718
[2025-11-20 21:09:49] 2025-11-21 02:09:17,957 | INFO     | sum of square deviations: 117677336914.91019
[2025-11-20 21:09:49] 2025-11-21 02:09:17,967 | INFO     | sum of deviations: 535983893988.6987
[2025-11-20 21:09:49] 2025-11-21 02:09:17,968 | INFO     | mean x: 1763668878.1395028
[2025-11-20 21:09:49] 2025-11-21 02:09:17,968 | INFO     | mean y: 3213375.052486188
[2025-11-20 21:09:49] 2025-11-21 02:09:17,968 | INFO     | intersect: -8029753190.934761
[2025-11-20 21:09:49] 2025-11-21 02:09:17,969 | INFO     | chi2: 4.528712282194672
[2025-11-20 21:09:49] 2025-11-21 02:09:17,969 | INFO     | current chi2=4.528712282194672 (change=34.45526200399362 %)
[2025-11-20 21:09:49] 2025-11-21 02:09:17,969 | INFO     | sum of square deviations: 115256098805.98108
[2025-11-20 21:09:49] 2025-11-21 02:09:17,980 | INFO     | sum of deviations: 489716265937.1701
[2025-11-20 21:09:49] 2025-11-21 02:09:17,980 | INFO     | mean x: 1763669030.6383867
[2025-11-20 21:09:49] 2025-11-21 02:09:17,981 | INFO     | mean y: 3216288.0083449236
[2025-11-20 21:09:49] 2025-11-21 02:09:17,981 | INFO     | intersect: -7490507870.460558
[2025-11-20 21:09:49] 2025-11-21 02:09:17,982 | INFO     | chi2: 4.485940696088986
[2025-11-20 21:09:49] 2025-11-21 02:09:17,982 | INFO     | current chi2=4.485940696088986 (change=0.9444535982965608 %)
[2025-11-20 21:09:49] 2025-11-21 02:09:17,982 | INFO     | left removable region: 20
[2025-11-20 21:09:49] 2025-11-21 02:09:17,983 | INFO     | sum of square deviations: 105449435719.90247
[2025-11-20 21:09:49] 2025-11-21 02:09:17,992 | INFO     | sum of deviations: 850964393104.5298
[2025-11-20 21:09:49] 2025-11-21 02:09:17,993 | INFO     | mean x: 1763669000.1518624
[2025-11-20 21:09:49] 2025-11-21 02:09:17,993 | INFO     | mean y: 3246107.9383954154
[2025-11-20 21:09:49] 2025-11-21 02:09:17,993 | INFO     | intersect: -14229352768.531824
[2025-11-20 21:09:49] 2025-11-21 02:09:17,994 | INFO     | chi2: 0.0779548292592849
[2025-11-20 21:09:49] 2025-11-21 02:09:17,994 | INFO     | current memory leak: 8.07 B/s (using 698 data points, chi2=0.08)
[2025-11-20 21:09:49] 2025-11-21 02:09:17,994 | INFO     | could have reported an average CPU frequency of 2172 MHz (28 samples)
[2025-11-20 21:09:49] 2025-11-21 02:09:17,995 | INFO     | ..............................
[2025-11-20 21:09:49] 2025-11-21 02:09:17,995 | INFO     | . Timing measurements:
[2025-11-20 21:09:49] 2025-11-21 02:09:17,995 | INFO     | . get job = 0 s
[2025-11-20 21:09:49] 2025-11-21 02:09:17,995 | INFO     | . initial setup = 2 s
[2025-11-20 21:09:49] 2025-11-21 02:09:17,995 | INFO     | . payload setup = 9 s
[2025-11-20 21:09:49] 2025-11-21 02:09:17,995 | INFO     | . stage-in = 0 s
[2025-11-20 21:09:49] 2025-11-21 02:09:17,995 | INFO     | . payload execution = 44424 s
[2025-11-20 21:09:49] 2025-11-21 02:09:17,995 | INFO     | . stage-out = 3 s
[2025-11-20 21:09:49] 2025-11-21 02:09:17,996 | INFO     | . log creation = 0 s
[2025-11-20 21:09:49] 2025-11-21 02:09:17,996 | INFO     | ..............................
[2025-11-20 21:09:49] 2025-11-21 02:09:18,086 | INFO     | 
[2025-11-20 21:09:49] 2025-11-21 02:09:18,086 | INFO     | job summary report
[2025-11-20 21:09:49] 2025-11-21 02:09:18,086 | INFO     | --------------------------------------------------
[2025-11-20 21:09:49] 2025-11-21 02:09:18,087 | INFO     | PanDA job id: 6893838438
[2025-11-20 21:09:49] 2025-11-21 02:09:18,087 | INFO     | task id: 47523449
[2025-11-20 21:09:49] 2025-11-21 02:09:18,087 | INFO     | errors: (none)
[2025-11-20 21:09:49] 2025-11-21 02:09:18,087 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 21:09:49] 2025-11-21 02:09:18,087 | INFO     | pilot state: finished 
[2025-11-20 21:09:49] 2025-11-21 02:09:18,087 | INFO     | transexitcode: 0
[2025-11-20 21:09:49] 2025-11-21 02:09:18,087 | INFO     | exeerrorcode: 0
[2025-11-20 21:09:49] 2025-11-21 02:09:18,087 | INFO     | exeerrordiag: 
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | exitcode: 0
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | exitmsg: OK
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | cpuconsumptiontime: 344898 s
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | nevents: 1000
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | neventsw: 0
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | pid: 15165
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | pgrp: 15165
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | corecount: 8
[2025-11-20 21:09:49] 2025-11-21 02:09:18,088 | INFO     | event service: False
[2025-11-20 21:09:49] 2025-11-21 02:09:18,089 | INFO     | sizes: {0: 2298807, 6: 2299069, 11: 2299097, 44437: 2344799, 44442: 2353793, 44445: 2353849, 44451: 2354223}
[2025-11-20 21:09:49] 2025-11-21 02:09:18,089 | INFO     | --------------------------------------------------
[2025-11-20 21:09:49] 2025-11-21 02:09:18,089 | INFO     | 
[2025-11-20 21:09:49] 2025-11-21 02:09:18,089 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 21:09:49] 2025-11-21 02:09:18,118 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,118 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,118 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,120 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,120 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,120 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,120 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,120 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,121 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,121 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,121 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,121 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,121 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 21:09:49] 2025-11-21 02:09:18,121 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,122 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 21:09:49] 2025-11-21 02:09:18,122 | INFO     | job 6893838438 has completed (purged errors)
[2025-11-20 21:09:49] 2025-11-21 02:09:18,122 | INFO     | overall cleanup function is called
[2025-11-20 21:09:49] 2025-11-21 02:09:19,137 | INFO     | --- collectZombieJob: --- 10, [15165]
[2025-11-20 21:09:49] 2025-11-21 02:09:19,137 | INFO     | zombie collector waiting for pid 15165
[2025-11-20 21:09:49] 2025-11-21 02:09:19,138 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 21:09:49] 2025-11-21 02:09:19,138 | INFO     | collected zombie processes
[2025-11-20 21:09:49] 2025-11-21 02:09:19,138 | INFO     | will attempt to kill all subprocesses of pid=15165
[2025-11-20 21:09:49] 2025-11-21 02:09:19,231 | INFO     | process IDs to be killed: [15165] (in reverse order)
[2025-11-20 21:09:49] 2025-11-21 02:09:19,290 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 21:09:49] 2025-11-21 02:09:19,291 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 21:09:49] 2025-11-21 02:09:19,295 | INFO     | did not find any defunct processes belonging to 15165
[2025-11-20 21:09:49] 2025-11-21 02:09:19,298 | INFO     | did not find any defunct processes belonging to 15165
[2025-11-20 21:09:49] 2025-11-21 02:09:19,300 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 21:09:49] 2025-11-21 02:09:19,300 | INFO     | ready for new job
[2025-11-20 21:09:49] 2025-11-21 02:09:19,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 21:09:49] 2025-11-21 02:09:19,304 | INFO     | ***************************************
[2025-11-20 21:09:49] 2025-11-21 02:09:19,305 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 21:09:49] 2025-11-21 02:09:19,305 | INFO     | ***************************************
[2025-11-20 21:09:49] 2025-11-21 02:09:19,305 | INFO     | 
[2025-11-20 21:09:49] 2025-11-21 02:09:19,305 | INFO     | architecture information:
[2025-11-20 21:09:49] 2025-11-21 02:09:19,306 | INFO     | executing command: cat /etc/os-release
[2025-11-20 21:09:49] 2025-11-21 02:09:19,324 | INFO     | cat /etc/os-release:
[2025-11-20 21:09:49] NAME="CentOS Linux"
[2025-11-20 21:09:49] VERSION="7 (Core)"
[2025-11-20 21:09:49] ID="centos"
[2025-11-20 21:09:49] ID_LIKE="rhel fedora"
[2025-11-20 21:09:49] VERSION_ID="7"
[2025-11-20 21:09:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 21:09:49] ANSI_COLOR="0;31"
[2025-11-20 21:09:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 21:09:49] HOME_URL="https://www.centos.org/"
[2025-11-20 21:09:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 21:09:49] 
[2025-11-20 21:09:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 21:09:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 21:09:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 21:09:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 21:09:49] 
[2025-11-20 21:09:49] 2025-11-21 02:09:19,325 | INFO     | ***************************************
[2025-11-20 21:09:49] 2025-11-21 02:09:19,828 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 21:09:49] 2025-11-21 02:09:19,848 | INFO     | sufficient remaining disk space (17444110336 B)
[2025-11-20 21:09:49] 2025-11-21 02:09:19,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 21:09:49] 2025-11-21 02:09:19,849 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 21:09:49] 2025-11-21 02:09:19,849 | INFO     | update_server=False
[2025-11-20 21:09:49] 2025-11-21 02:09:19,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:09:49] 2025-11-21 02:09:19,850 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:09:49] 2025-11-21 02:09:19,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:09:49] 2025-11-21 02:09:19,855 | INFO     | all job control threads have been joined
[2025-11-20 21:09:49] 2025-11-21 02:09:19,963 | INFO     | all payload control threads have been joined
[2025-11-20 21:09:49] 2025-11-21 02:09:20,791 | INFO     | all data control threads have been joined
[2025-11-20 21:09:49] 2025-11-21 02:09:20,834 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:09:49] 2025-11-21 02:09:20,834 | INFO     | aborting loop
[2025-11-20 21:09:49] 2025-11-21 02:09:20,855 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:20,856 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:20,856 | INFO     | [job] control thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:20,969 | INFO     | [payload] control thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:21,132 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:21,159 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:21,449 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:21,627 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:21,796 | INFO     | [data] control thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:21,810 | INFO     | [job] validate thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:21,839 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:21,856 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:22,267 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:22,269 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:09:49] 2025-11-21 02:09:22,272 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:22,370 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:22,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:09:49] 2025-11-21 02:09:26,490 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:09:49] 2025-11-21 02:09:27,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811653035840)>', '<ExcThread(monitor, started 139810815588096)>']
[2025-11-20 21:09:49] 2025-11-21 02:09:32,189 | INFO     | all workflow threads have been joined
[2025-11-20 21:09:49] 2025-11-21 02:09:32,189 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:09:49] 2025-11-21 02:09:32,190 | INFO     | traces error code: 0
[2025-11-20 21:09:49] 2025-11-21 02:09:32,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:09:49] 2025-11-21 02:09:48,444 | INFO     | 44472s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 21:09:49] 2025-11-21 02:09:49,562 | INFO     | PID=8674 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 21:09:49] 2025-11-21 02:09:49,562 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:09:49] 2025-11-21 02:09:49,563 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:09:49] 2025-11-21 02:09:49,563 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:09:49] 2025-11-21 02:09:49,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:09:49] 2025-11-21 02:09:49,563 | CRITICAL | thread 'MainThread' is not alive
[2025-11-20 21:09:49] 2025-11-21 02:09:49,563 | INFO     | [monitor] control thread has ended
[2025-11-20 21:09:49] 2025-11-21 02:09:49,687 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:09:49] 2025-11-21 02:09:49,691 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:09:49] 2025-11-21 02:09:49,696 [wrapper] pilotpid: 8674
[2025-11-20 21:09:49] 2025-11-21 02:09:49,700 [wrapper] Pilot exit status: 0
[2025-11-20 21:09:49] 2025-11-21 02:09:49,717 [wrapper] pandaids: 6893838438
[2025-11-20 21:09:49] 2025-11-21 02:09:49,761 [wrapper] cleanup supervisor_pilot 26661 8675
[2025-11-20 21:09:49] 2025-11-21 02:09:49,767 [wrapper] Test setup, not cleaning
[2025-11-20 21:09:49] 2025-11-21 02:09:49,772 [wrapper] apfmon messages muted
[2025-11-20 21:09:49] 2025-11-21 02:09:49,777 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:09:49] 2025-11-21 02:09:49,781 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:09:49]  *** Error codes and diagnostics ***
[2025-11-20 21:09:49]     "exeErrorCode": 0,
[2025-11-20 21:09:49]     "exeErrorDiag": "",
[2025-11-20 21:09:49]     "pilotErrorCode": 0,
[2025-11-20 21:09:49]     "pilotErrorDiag": "",
[2025-11-20 21:09:49]  *** Listing of results directory ***
[2025-11-20 21:09:49] total 1304808
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:17 queuedata.json
[2025-11-20 21:09:49] -rwx------ 1 boincer umatlas     36292 Nov 20 05:18 runpilot2-wrapper.sh
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas       100 Nov 20 08:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:09:49] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 08:47 run_atlas
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas       105 Nov 20 08:47 job.xml
[2025-11-20 21:09:49] -rw-r--r-- 2 boincer umatlas 409471168 Nov 20 08:47 EVNT.47493127._000137.pool.root.1
[2025-11-20 21:09:49] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 08:47 start_atlas.sh
[2025-11-20 21:09:49] drwxrwx--x 2 boincer umatlas      4096 Nov 20 08:47 shared
[2025-11-20 21:09:49] -rw-r--r-- 2 boincer umatlas    590104 Nov 20 08:47 input.tar.gz
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas         0 Nov 20 08:47 boinc_lockfile
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas      2786 Nov 20 08:47 pandaJob.out
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas        57 Nov 20 08:47 setup.sh.local
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas    989448 Nov 20 08:48 agis_schedconf.cvmfs.json
[2025-11-20 21:09:49] drwx------ 5 boincer umatlas      4096 Nov 20 08:48 pilot3
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas       532 Nov 20 20:58 boinc_task_state.xml
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas      5912 Nov 20 21:01 init_data.xml
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas 906573790 Nov 20 21:08 HITS.47523449._001367.pool.root.1
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas      1064 Nov 20 21:09 memory_monitor_summary.json
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas   1526164 Nov 20 21:09 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas   1966790 Nov 20 21:09 log.47523449._001367.job.log.tgz.1
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas        95 Nov 20 21:09 pilot_heartbeat.json
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas      8674 Nov 20 21:09 heartbeat.json
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 21:09 boinc_mmap_file
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas        29 Nov 20 21:09 wrapper_checkpoint.txt
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas       930 Nov 20 21:09 pilotlog.txt
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas   6109326 Nov 20 21:09 log.47523449._001367.job.log.1
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas       353 Nov 20 21:09 output.list
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas       620 Nov 20 21:09 runtime_log
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas   8099840 Nov 20 21:09 result.tar.gz
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas      9343 Nov 20 21:09 runtime_log.err
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas       668 Nov 20 21:09 KTXKDmFvGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJMGKDmm8IRun.diag
[2025-11-20 21:09:49] -rw-r--r-- 1 boincer umatlas     21283 Nov 20 21:09 stderr.txt
[2025-11-20 21:09:49] HITS file was successfully produced:
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas 906573790 Nov 20 21:08 shared/HITS.pool.root.1
[2025-11-20 21:09:49]  *** Contents of shared directory: ***
[2025-11-20 21:09:49] total 1293716
[2025-11-20 21:09:49] -rw-r--r-- 2 boincer umatlas 409471168 Nov 20 08:47 ATLAS.root_0
[2025-11-20 21:09:49] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 08:47 start_atlas.sh
[2025-11-20 21:09:49] -rw-r--r-- 2 boincer umatlas    590104 Nov 20 08:47 input.tar.gz
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas 906573790 Nov 20 21:08 HITS.pool.root.1
[2025-11-20 21:09:49] -rw------- 1 boincer umatlas   8099840 Nov 20 21:09 result.tar.gz
21:09:51 (4798): run_atlas exited; CPU time 342624.759296
21:09:51 (4798): called boinc_finish(0)

</stderr_txt>
]]>

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