Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:29:38 (13352): wrapper (7.7.26015): starting
02:29:38 (13352): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 02:29:38] Arguments: --nthreads 8
[2025-11-23 02:29:38] Threads: 8
[2025-11-23 02:29:38] Checking for CVMFS
[2025-11-23 02:29:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:29:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:29:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:29:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:29:41] 2.11.2.0 11478 280341 142700 153192 0 220 16949192 25165825 4632 130560 2 139574853 99.880 77472434 3243 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 02:29:41] CVMFS is ok
[2025-11-23 02:29:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:29:41] Checking for apptainer binary...
[2025-11-23 02:29:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:29:41] Running /usr/bin/apptainer --version
[2025-11-23 02:29:41] apptainer version 1.3.2-1.el7
[2025-11-23 02:29:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:29:58] cg-vwn355.simple-grid.lan
[2025-11-23 02:29:58] apptainer works
[2025-11-23 02:29:58] Set ATHENA_PROC_NUMBER=8
[2025-11-23 02:29:58] Set ATHENA_CORE_NUMBER=8
[2025-11-23 02:29:58] Starting ATLAS job with PandaID=6893838443
[2025-11-23 02:29:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 04:14:30]  *** The last 200 lines of the pilot log: ***
[2025-11-24 04:14:30] 2025-11-24 03:13:10,873 | INFO     | monitor loop #6199: job 0:6893838443 is in state 'finished'
[2025-11-24 04:14:30] 2025-11-24 03:13:10,874 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:14:30] 2025-11-24 03:13:11,533 | INFO     | time since job start (92371s) is within the limit (172800.0s)
[2025-11-24 04:14:30] 2025-11-24 03:13:13,386 | INFO     | monitor loop #6200: job 0:6893838443 is in state 'finished'
[2025-11-24 04:14:30] 2025-11-24 03:13:13,387 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:14:30] 2025-11-24 03:13:13,541 | INFO     | time since job start (92373s) is within the limit (172800.0s)
[2025-11-24 04:14:30] 2025-11-24 03:13:15,548 | INFO     | time since job start (92375s) is within the limit (172800.0s)
[2025-11-24 04:14:30] 2025-11-24 03:13:15,892 | INFO     | monitor loop #6201: job 0:6893838443 is in state 'finished'
[2025-11-24 04:14:30] 2025-11-24 03:13:15,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:14:30] 2025-11-24 03:13:17,559 | INFO     | time since job start (92377s) is within the limit (172800.0s)
[2025-11-24 04:14:30] 2025-11-24 03:13:18,400 | INFO     | monitor loop #6202: job 0:6893838443 is in state 'finished'
[2025-11-24 04:14:30] 2025-11-24 03:13:18,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:14:30] 2025-11-24 03:13:19,566 | INFO     | time since job start (92379s) is within the limit (172800.0s)
[2025-11-24 04:14:30] 2025-11-24 03:13:20,905 | INFO     | monitor loop #6203: job 0:6893838443 is in state 'finished'
[2025-11-24 04:14:30] 2025-11-24 03:13:20,906 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 04:14:30] 2025-11-24 03:13:20,949 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 04:14:30] 2025-11-24 03:13:20,950 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 04:14:30] 2025-11-24 03:13:20,952 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6893838443/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 04:14:30] 2025-11-24 03:13:20,953 | INFO     | extracted standard info from prmon json
[2025-11-24 04:14:30] 2025-11-24 03:13:20,953 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 04:14:30] 2025-11-24 03:13:20,953 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 04:14:30] 2025-11-24 03:13:20,984 | INFO     | fitting pss+swap vs Time
[2025-11-24 04:14:30] 2025-11-24 03:13:20,987 | INFO     | sum of square deviations: 1054926099817.7449
[2025-11-24 04:14:30] 2025-11-24 03:13:21,057 | INFO     | sum of deviations: 3791817406286.253
[2025-11-24 04:14:30] 2025-11-24 03:13:21,058 | INFO     | mean x: 1763908000.6968086
[2025-11-24 04:14:30] 2025-11-24 03:13:21,058 | INFO     | mean y: 2834343.2001329786
[2025-11-24 04:14:30] 2025-11-24 03:13:21,058 | INFO     | intersect: -6337341581.241656
[2025-11-24 04:14:30] 2025-11-24 03:13:21,060 | INFO     | chi2: 26.88890380433955
[2025-11-24 04:14:30] 2025-11-24 03:13:21,062 | INFO     | sum of square deviations: 1044440387080.5602
[2025-11-24 04:14:30] 2025-11-24 03:13:21,127 | INFO     | sum of deviations: 4280274978627.143
[2025-11-24 04:14:30] 2025-11-24 03:13:21,128 | INFO     | mean x: 1763907848.2008004
[2025-11-24 04:14:30] 2025-11-24 03:13:21,128 | INFO     | mean y: 2841447.04269513
[2025-11-24 04:14:30] 2025-11-24 03:13:21,128 | INFO     | intersect: -7225920213.890263
[2025-11-24 04:14:30] 2025-11-24 03:13:21,129 | INFO     | chi2: 23.78978510421319
[2025-11-24 04:14:30] 2025-11-24 03:13:21,130 | INFO     | current chi2=23.78978510421319 (change=11.525641664968866 %)
[2025-11-24 04:14:30] 2025-11-24 03:13:21,130 | INFO     | right removable region: 1498
[2025-11-24 04:14:30] 2025-11-24 03:13:21,132 | INFO     | sum of square deviations: 1044439289080.5585
[2025-11-24 04:14:30] 2025-11-24 03:13:21,203 | INFO     | sum of deviations: 3143168552986.014
[2025-11-24 04:14:30] 2025-11-24 03:13:21,203 | INFO     | mean x: 1763908153.2008004
[2025-11-24 04:14:30] 2025-11-24 03:13:21,204 | INFO     | mean y: 2843776.156104069
[2025-11-24 04:14:30] 2025-11-24 03:13:21,204 | INFO     | intersect: -5305517078.764549
[2025-11-24 04:14:30] 2025-11-24 03:13:21,205 | INFO     | chi2: 21.854881643979923
[2025-11-24 04:14:30] 2025-11-24 03:13:21,206 | INFO     | current chi2=21.854881643979923 (change=18.721559632889143 %)
[2025-11-24 04:14:30] 2025-11-24 03:13:21,206 | INFO     | left removable region: 10
[2025-11-24 04:14:30] 2025-11-24 03:13:21,208 | INFO     | sum of square deviations: 1021614717886.5802
[2025-11-24 04:14:30] 2025-11-24 03:13:21,267 | INFO     | sum of deviations: 3173261888747.651
[2025-11-24 04:14:30] 2025-11-24 03:13:21,267 | INFO     | mean x: 1763908122.7096775
[2025-11-24 04:14:30] 2025-11-24 03:13:21,267 | INFO     | mean y: 2860884.1774193547
[2025-11-24 04:14:30] 2025-11-24 03:13:21,267 | INFO     | intersect: -5476056287.87183
[2025-11-24 04:14:30] 2025-11-24 03:13:21,269 | INFO     | chi2: 14.222250052793548
[2025-11-24 04:14:30] 2025-11-24 03:13:21,270 | INFO     | current memory leak: 3.11 B/s (using 1488 data points, chi2=14.22)
[2025-11-24 04:14:30] 2025-11-24 03:13:21,272 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | ..............................
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | . Timing measurements:
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | . get job = 0 s
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | . initial setup = 13 s
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | . payload setup = 160 s
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | . stage-in = 0 s
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | . payload execution = 91905 s
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | . stage-out = 7 s
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | . log creation = 2 s
[2025-11-24 04:14:30] 2025-11-24 03:13:21,273 | INFO     | ..............................
[2025-11-24 04:14:30] 2025-11-24 03:13:21,392 | INFO     | 
[2025-11-24 04:14:30] 2025-11-24 03:13:21,392 | INFO     | job summary report
[2025-11-24 04:14:30] 2025-11-24 03:13:21,392 | INFO     | --------------------------------------------------
[2025-11-24 04:14:30] 2025-11-24 03:13:21,392 | INFO     | PanDA job id: 6893838443
[2025-11-24 04:14:30] 2025-11-24 03:13:21,392 | INFO     | task id: 47523449
[2025-11-24 04:14:30] 2025-11-24 03:13:21,392 | INFO     | errors: (none)
[2025-11-24 04:14:30] 2025-11-24 03:13:21,392 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 04:14:30] 2025-11-24 03:13:21,392 | INFO     | pilot state: finished 
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | transexitcode: 0
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | exeerrorcode: 0
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | exeerrordiag: 
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | exitcode: 0
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | exitmsg: OK
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | cpuconsumptiontime: 339311 s
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | nevents: 1000
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | neventsw: 0
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | pid: 23763
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | pgrp: 23763
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | corecount: 8
[2025-11-24 04:14:30] 2025-11-24 03:13:21,393 | INFO     | event service: False
[2025-11-24 04:14:30] 2025-11-24 03:13:21,394 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298863, 3: 2298863, 13: 2298891, 24: 2298947, 35: 2299103, 46: 2299131, 57: 2299159, 68: 2299187, 78: 2299215, 89: 2299551, 100
[2025-11-24 04:14:30] 2025-11-24 03:13:21,394 | INFO     | --------------------------------------------------
[2025-11-24 04:14:30] 2025-11-24 03:13:21,394 | INFO     | 
[2025-11-24 04:14:30] 2025-11-24 03:13:21,394 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-11-24 04:14:30] 2025-11-24 03:13:21,577 | INFO     | time since job start (92381s) is within the limit (172800.0s)
[2025-11-24 04:14:30] 2025-11-24 03:13:21,940 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,941 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 04:14:30] 2025-11-24 03:13:21,942 | INFO     | job 6893838443 has completed (purged errors)
[2025-11-24 04:14:30] 2025-11-24 03:13:21,943 | INFO     | overall cleanup function is called
[2025-11-24 04:14:30] 2025-11-24 03:13:22,961 | INFO     | --- collectZombieJob: --- 10, [23763]
[2025-11-24 04:14:30] 2025-11-24 03:13:22,962 | INFO     | zombie collector waiting for pid 23763
[2025-11-24 04:14:30] 2025-11-24 03:13:22,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 04:14:30] 2025-11-24 03:13:22,962 | INFO     | collected zombie processes
[2025-11-24 04:14:30] 2025-11-24 03:13:22,962 | INFO     | will attempt to kill all subprocesses of pid=23763
[2025-11-24 04:14:30] 2025-11-24 03:13:23,077 | INFO     | process IDs to be killed: [23763] (in reverse order)
[2025-11-24 04:14:30] 2025-11-24 03:13:23,629 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 04:14:30] 2025-11-24 03:13:23,630 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 04:14:30] 2025-11-24 03:13:23,633 | INFO     | did not find any defunct processes belonging to 23763
[2025-11-24 04:14:30] 2025-11-24 03:13:23,636 | INFO     | did not find any defunct processes belonging to 23763
[2025-11-24 04:14:30] 2025-11-24 03:13:23,672 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 04:14:30] 2025-11-24 03:13:23,672 | INFO     | ready for new job
[2025-11-24 04:14:30] 2025-11-24 03:13:23,672 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 04:14:30] 2025-11-24 03:13:23,678 | INFO     | ***************************************
[2025-11-24 04:14:30] 2025-11-24 03:13:23,679 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 04:14:30] 2025-11-24 03:13:23,679 | INFO     | ***************************************
[2025-11-24 04:14:30] 2025-11-24 03:13:23,679 | INFO     | 
[2025-11-24 04:14:30] 2025-11-24 03:13:23,679 | INFO     | pilot is running in a VM
[2025-11-24 04:14:30] 2025-11-24 03:13:23,679 | INFO     | architecture information:
[2025-11-24 04:14:30] 2025-11-24 03:13:23,688 | INFO     | executing command: cat /etc/os-release
[2025-11-24 04:14:30] 2025-11-24 03:13:23,902 | INFO     | cat /etc/os-release:
[2025-11-24 04:14:30] NAME="CentOS Linux"
[2025-11-24 04:14:30] VERSION="7 (Core)"
[2025-11-24 04:14:30] ID="centos"
[2025-11-24 04:14:30] ID_LIKE="rhel fedora"
[2025-11-24 04:14:30] VERSION_ID="7"
[2025-11-24 04:14:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 04:14:30] ANSI_COLOR="0;31"
[2025-11-24 04:14:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 04:14:30] HOME_URL="https://www.centos.org/"
[2025-11-24 04:14:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 04:14:30] 
[2025-11-24 04:14:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 04:14:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 04:14:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 04:14:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 04:14:30] 
[2025-11-24 04:14:30] 2025-11-24 03:13:23,902 | INFO     | ***************************************
[2025-11-24 04:14:30] 2025-11-24 03:13:24,405 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-11-24 04:14:30] 2025-11-24 03:13:24,568 | INFO     | sufficient remaining disk space (494815674368 B)
[2025-11-24 04:14:30] 2025-11-24 03:13:24,569 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 04:14:30] 2025-11-24 03:13:24,569 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 04:14:30] 2025-11-24 03:13:24,569 | INFO     | update_server=False
[2025-11-24 04:14:30] 2025-11-24 03:13:24,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 04:14:30] 2025-11-24 03:13:24,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:14:30] 2025-11-24 03:13:24,571 | INFO     | aborting loop
[2025-11-24 04:14:30] 2025-11-24 03:13:24,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 04:14:30] 2025-11-24 03:13:24,755 | INFO     | all payload control threads have been joined
[2025-11-24 04:14:30] 2025-11-24 03:13:25,004 | INFO     | all data control threads have been joined
[2025-11-24 04:14:30] 2025-11-24 03:13:25,575 | INFO     | [job] retrieve thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:25,577 | INFO     | [job] job monitor thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:25,578 | INFO     | all job control threads have been joined
[2025-11-24 04:14:30] 2025-11-24 03:13:25,761 | INFO     | [payload] control thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:25,895 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:25,935 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,010 | INFO     | [data] control thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,098 | INFO     | [data] copytool_in thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 04:14:30] 2025-11-24 03:13:26,526 | INFO     | [payload] failed_post thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,561 | INFO     | [job] validate thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,583 | INFO     | [job] control thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,609 | INFO     | [payload] validate_post thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,682 | INFO     | [data] copytool_out thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:26,710 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:27,412 | INFO     | [job] queue monitor thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:27,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 04:14:30] 2025-11-24 03:13:31,861 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 04:14:30] 2025-11-24 03:13:54,766 | INFO     | PID=17172 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 04:14:30] 2025-11-24 03:13:54,766 | INFO     | .. there are 9 such processes running
[2025-11-24 04:14:30] 2025-11-24 03:13:54,769 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 04:14:30] 2025-11-24 03:13:54,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 04:14:30] 2025-11-24 03:13:54,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 04:14:30] 2025-11-24 03:14:20,468 | INFO     | [monitor] cgroup control has ended
[2025-11-24 04:14:30] 2025-11-24 03:14:20,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140383592544064)>', '<ExcThread(monitor, started 140383010940672)>']
[2025-11-24 04:14:30] 2025-11-24 03:14:20,925 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 04:14:30] 2025-11-24 03:14:20,926 | INFO     | [monitor] control thread has ended
[2025-11-24 04:14:30] 2025-11-24 03:14:25,923 | INFO     | all workflow threads have been joined
[2025-11-24 04:14:30] 2025-11-24 03:14:25,924 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 04:14:30] 2025-11-24 03:14:25,924 | INFO     | traces error code: 0
[2025-11-24 04:14:30] 2025-11-24 03:14:25,924 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 04:14:30] 2025-11-24 03:14:26,505 [wrapper] ==== pilot stdout END ====
[2025-11-24 04:14:30] 2025-11-24 03:14:26,560 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 04:14:30] 2025-11-24 03:14:26,642 [wrapper] pilotpid: 17172
[2025-11-24 04:14:30] 2025-11-24 03:14:26,757 [wrapper] Pilot exit status: 0
[2025-11-24 04:14:30] 2025-11-24 03:14:27,108 [wrapper] pandaids: 6893838443
[2025-11-24 04:14:30] 2025-11-24 03:14:27,986 [wrapper] cleanup supervisor_pilot 25148 17173
[2025-11-24 04:14:30] 2025-11-24 03:14:28,091 [wrapper] Test setup, not cleaning
[2025-11-24 04:14:30] 2025-11-24 03:14:28,197 [wrapper] apfmon messages muted
[2025-11-24 04:14:30] 2025-11-24 03:14:28,279 [wrapper] ==== wrapper stdout END ====
[2025-11-24 04:14:30] 2025-11-24 03:14:28,375 [wrapper] ==== wrapper stderr END ====
[2025-11-24 04:14:30]  *** Error codes and diagnostics ***
[2025-11-24 04:14:30]     "exeErrorCode": 0,
[2025-11-24 04:14:30]     "exeErrorDiag": "",
[2025-11-24 04:14:30]     "pilotErrorCode": 0,
[2025-11-24 04:14:30]     "pilotErrorDiag": "",
[2025-11-24 04:14:30]  *** Listing of results directory ***
[2025-11-24 04:14:30] total 1333804
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:17 queuedata.json
[2025-11-24 04:14:30] -rwx------. 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc       100 Nov 23 02:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 04:14:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 02:29 run_atlas
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc       105 Nov 23 02:29 job.xml
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc      6392 Nov 23 02:29 init_data.xml
[2025-11-24 04:14:30] -rw-r--r--. 2 boinc boinc 410563546 Nov 23 02:29 EVNT.47493127._000138.pool.root.1
[2025-11-24 04:14:30] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:29 start_atlas.sh
[2025-11-24 04:14:30] drwxrwx--x. 2 boinc boinc        68 Nov 23 02:29 shared
[2025-11-24 04:14:30] -rw-r--r--. 2 boinc boinc    590100 Nov 23 02:29 input.tar.gz
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc         0 Nov 23 02:29 boinc_lockfile
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc      2786 Nov 23 02:29 pandaJob.out
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc    989784 Nov 23 02:33 agis_schedconf.cvmfs.json
[2025-11-24 04:14:30] drwx------. 5 boinc boinc      4096 Nov 23 02:33 pilot3
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc       533 Nov 24 03:46 boinc_task_state.xml
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc 921593991 Nov 24 04:10 HITS.47523449._001372.pool.root.1
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc      1031 Nov 24 04:11 memory_monitor_summary.json
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc   1526164 Nov 24 04:11 agis_ddmendpoints.agis.ALL.json
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc   2573237 Nov 24 04:11 log.47523449._001372.job.log.tgz.1
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc      8627 Nov 24 04:13 heartbeat.json
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc        95 Nov 24 04:13 pilot_heartbeat.json
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc        29 Nov 24 04:14 wrapper_checkpoint.txt
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc      8192 Nov 24 04:14 boinc_mmap_file
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc      4884 Nov 24 04:14 pilotlog.txt
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc  12300858 Nov 24 04:14 log.47523449._001372.job.log.1
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc       353 Nov 24 04:14 output.list
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc       620 Nov 24 04:14 runtime_log
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc  14888960 Nov 24 04:14 result.tar.gz
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc      8817 Nov 24 04:14 runtime_log.err
[2025-11-24 04:14:30] -rw-------. 1 boinc boinc       662 Nov 24 04:14 J7cKDmFvGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNMGKDmwgy6Ko.diag
[2025-11-24 04:14:30] -rw-r--r--. 1 boinc boinc     21444 Nov 24 04:14 stderr.txt
[2025-11-24 04:14:31] HITS file was successfully produced:
[2025-11-24 04:14:31] -rw-------. 1 boinc boinc 921593991 Nov 24 04:10 shared/HITS.pool.root.1
[2025-11-24 04:14:31]  *** Contents of shared directory: ***
[2025-11-24 04:14:31] total 1316076
[2025-11-24 04:14:31] -rw-r--r--. 2 boinc boinc 410563546 Nov 23 02:29 ATLAS.root_0
[2025-11-24 04:14:31] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:29 start_atlas.sh
[2025-11-24 04:14:31] -rw-r--r--. 2 boinc boinc    590100 Nov 23 02:29 input.tar.gz
[2025-11-24 04:14:31] -rw-------. 1 boinc boinc 921593991 Nov 24 04:10 HITS.pool.root.1
[2025-11-24 04:14:31] -rw-------. 1 boinc boinc  14888960 Nov 24 04:14 result.tar.gz
04:14:32 (13352): run_atlas exited; CPU time 339901.554771
04:14:32 (13352): called boinc_finish(0)

</stderr_txt>
]]>

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