Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:41:21 (246252): wrapper (7.7.26015): starting
14:41:21 (246252): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 14:41:21] Arguments: --nthreads 3
[2025-11-20 14:41:21] Threads: 3
[2025-11-20 14:41:21] Checking for CVMFS
[2025-11-20 14:41:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 14:41:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 14:41:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 14:41:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 14:41:22] 2.9.2.0 16720 48 57204 153083 0 88 34390828 36864001 0 130560 0 689076 99.997 4142 8169 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 14:41:22] CVMFS is ok
[2025-11-20 14:41:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 14:41:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 14:41:22] Further information can be found at the LHC@home message board.
[2025-11-20 14:41:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 14:41:22] Checking for apptainer binary...
[2025-11-20 14:41:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 14:41:22] Running /usr/bin/apptainer --version
[2025-11-20 14:41:22] apptainer version 1.4.1-1.1
[2025-11-20 14:41:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 14:41:22] thA335
[2025-11-20 14:41:22] apptainer works
[2025-11-20 14:41:22] Set ATHENA_PROC_NUMBER=3
[2025-11-20 14:41:22] Set ATHENA_CORE_NUMBER=3
[2025-11-20 14:41:22] Starting ATLAS job with PandaID=6893834907
[2025-11-20 14:41:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:45:41]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:45:41] NAME="CentOS Linux"
[2025-11-20 14:45:41] VERSION="7 (Core)"
[2025-11-20 14:45:41] ID="centos"
[2025-11-20 14:45:41] ID_LIKE="rhel fedora"
[2025-11-20 14:45:41] VERSION_ID="7"
[2025-11-20 14:45:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 14:45:41] ANSI_COLOR="0;31"
[2025-11-20 14:45:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 14:45:41] HOME_URL="https://www.centos.org/"
[2025-11-20 14:45:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 14:45:41] 
[2025-11-20 14:45:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 14:45:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 14:45:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 14:45:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:45:41] 
[2025-11-20 14:45:41] 2025-11-20 13:44:49,035 | INFO     | ***************************************
[2025-11-20 14:45:41] 2025-11-20 13:44:49,538 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 14:45:41] 2025-11-20 13:44:49,552 | INFO     | sufficient remaining disk space (827658862592 B)
[2025-11-20 14:45:41] 2025-11-20 13:44:49,552 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:45:41] 2025-11-20 13:44:49,552 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:45:41] 2025-11-20 13:44:49,552 | INFO     | update_server=False
[2025-11-20 14:45:41] 2025-11-20 13:44:49,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:45:41] 2025-11-20 13:44:49,552 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:45:41] 2025-11-20 13:44:49,552 | INFO     | aborting loop
[2025-11-20 14:45:41] 2025-11-20 13:44:49,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:45:41] 2025-11-20 13:44:49,600 | INFO     | all job control threads have been joined
[2025-11-20 14:45:41] 2025-11-20 13:44:50,437 | INFO     | all data control threads have been joined
[2025-11-20 14:45:41] 2025-11-20 13:44:50,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:45:41] 2025-11-20 13:44:50,558 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:50,559 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:50,559 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:50,569 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:50,606 | INFO     | [job] control thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:50,739 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:50,745 | INFO     | all payload control threads have been joined
[2025-11-20 14:45:41] 2025-11-20 13:44:51,087 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:51,347 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:51,443 | INFO     | [data] control thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:51,723 | INFO     | [job] validate thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:51,751 | INFO     | [payload] control thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:51,802 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:51,874 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:51,874 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:52,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:45:41] 2025-11-20 13:44:52,455 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:44:56,439 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:45:41] 2025-11-20 13:45:19,842 | INFO     | PID=249980 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 14:45:41] 2025-11-20 13:45:19,842 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:45:41] 2025-11-20 13:45:19,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:45:41] 2025-11-20 13:45:19,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:45:41] 2025-11-20 13:45:34,871 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:45:41] 2025-11-20 13:45:36,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139650930227008)>', '<ExcThread(monitor, started 139650291185408)>']
[2025-11-20 14:45:41] 2025-11-20 13:45:36,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:45:41] 2025-11-20 13:45:36,933 | INFO     | [monitor] control thread has ended
[2025-11-20 14:45:41] 2025-11-20 13:45:41,197 | INFO     | all workflow threads have been joined
[2025-11-20 14:45:41] 2025-11-20 13:45:41,197 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:45:41] 2025-11-20 13:45:41,198 | INFO     | traces error code: 0
[2025-11-20 14:45:41] 2025-11-20 13:45:41,198 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:45:41] 2025-11-20 13:45:41,245 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:45:41] 2025-11-20 13:45:41,248 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:45:41] 2025-11-20 13:45:41,251 [wrapper] pilotpid: 249980
[2025-11-20 14:45:41] 2025-11-20 13:45:41,254 [wrapper] Pilot exit status: 0
[2025-11-20 14:45:41] 2025-11-20 13:45:41,261 [wrapper] pandaids: 6893834907
[2025-11-20 14:45:41] 2025-11-20 13:45:41,279 [wrapper] cleanup supervisor_pilot  249986 249981
[2025-11-20 14:45:41] 2025-11-20 13:45:41,282 [wrapper] Test setup, not cleaning
[2025-11-20 14:45:41] 2025-11-20 13:45:41,285 [wrapper] apfmon messages muted
[2025-11-20 14:45:41] 2025-11-20 13:45:41,287 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:45:41] 2025-11-20 13:45:41,290 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:45:41]  *** Error codes and diagnostics ***
[2025-11-20 14:45:41]     "exeErrorCode": 65,
[2025-11-20 14:45:41]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 14:45:41]     "pilotErrorCode": 1305,
[2025-11-20 14:45:41]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 14:45:41]  *** Listing of results directory ***
[2025-11-20 14:45:41] total 404988
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 14:45:41] -rwx------ 1 boinc boinc     36292 Nov 20 11:14 runpilot2-wrapper.sh
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:15 queuedata.json
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc       100 Nov 20 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:45:41] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 14:41 run_atlas
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc       105 Nov 20 14:41 job.xml
[2025-11-20 14:45:41] -rw-r--r-- 2 boinc boinc 410513501 Nov 20 14:41 EVNT.47493127._000075.pool.root.1
[2025-11-20 14:45:41] -rw-r--r-- 2 boinc boinc    590100 Nov 20 14:41 input.tar.gz
[2025-11-20 14:45:41] -rw-r--r-- 2 boinc boinc     15847 Nov 20 14:41 start_atlas.sh
[2025-11-20 14:45:41] drwxrwx--x 2 boinc boinc      4096 Nov 20 14:41 shared
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc         0 Nov 20 14:41 boinc_setup_complete
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc      6194 Nov 20 14:41 init_data.xml
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc         0 Nov 20 14:41 boinc_lockfile
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc      2784 Nov 20 14:41 pandaJob.out
[2025-11-20 14:45:41] -rw------- 1 boinc boinc    989448 Nov 20 14:41 agis_schedconf.cvmfs.json
[2025-11-20 14:45:41] -rw------- 1 boinc boinc   1526164 Nov 20 14:41 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:45:41] drwx------ 5 boinc boinc      4096 Nov 20 14:41 pilot3
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc       523 Nov 20 14:42 boinc_task_state.xml
[2025-11-20 14:45:41] -rw------- 1 boinc boinc       951 Nov 20 14:42 memory_monitor_summary.json
[2025-11-20 14:45:41] -rw------- 1 boinc boinc     55797 Nov 20 14:42 log.47523449._000749.job.log.tgz.1
[2025-11-20 14:45:41] -rw------- 1 boinc boinc        95 Nov 20 14:44 pilot_heartbeat.json
[2025-11-20 14:45:41] -rw------- 1 boinc boinc      8403 Nov 20 14:44 heartbeat.json
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc      8192 Nov 20 14:45 boinc_mmap_file
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc        23 Nov 20 14:45 wrapper_checkpoint.txt
[2025-11-20 14:45:41] -rw------- 1 boinc boinc      4751 Nov 20 14:45 pilotlog.txt
[2025-11-20 14:45:41] -rw------- 1 boinc boinc     92165 Nov 20 14:45 log.47523449._000749.job.log.1
[2025-11-20 14:45:41] -rw------- 1 boinc boinc       186 Nov 20 14:45 output.list
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc       620 Nov 20 14:45 runtime_log
[2025-11-20 14:45:41] -rw------- 1 boinc boinc    163840 Nov 20 14:45 result.tar.gz
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc      8744 Nov 20 14:45 runtime_log.err
[2025-11-20 14:45:41] -rw------- 1 boinc boinc       649 Nov 20 14:45 mV6LDmcrGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbEHKDmvUGaXo.diag
[2025-11-20 14:45:41] -rw-r--r-- 1 boinc boinc      9072 Nov 20 14:45 stderr.txt
[2025-11-20 14:45:41] No HITS result produced
[2025-11-20 14:45:41]  *** Contents of shared directory: ***
[2025-11-20 14:45:41] total 401656
[2025-11-20 14:45:41] -rw-r--r-- 2 boinc boinc 410513501 Nov 20 14:41 ATLAS.root_0
[2025-11-20 14:45:41] -rw-r--r-- 2 boinc boinc    590100 Nov 20 14:41 input.tar.gz
[2025-11-20 14:45:41] -rw-r--r-- 2 boinc boinc     15847 Nov 20 14:41 start_atlas.sh
[2025-11-20 14:45:41] -rw------- 1 boinc boinc    163840 Nov 20 14:45 result.tar.gz
14:45:42 (246252): run_atlas exited; CPU time 30.653089
14:45:42 (246252): called boinc_finish(0)

</stderr_txt>
]]>

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