Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:32:30 (578540): wrapper (7.7.26015): starting
05:32:30 (578540): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:32:30] Arguments: --nthreads 8
[2025-11-20 05:32:30] Threads: 8
[2025-11-20 05:32:30] Checking for CVMFS
[2025-11-20 05:32:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:32:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:32:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:32:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:32:31] 2.11.3.0 756893 19809 183228 153083 2 57 26560107 45568000 13748 130560 0 143620276 99.770 98153995 25277 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 05:32:31] CVMFS is ok
[2025-11-20 05:32:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:32:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:32:31] Further information can be found at the LHC@home message board.
[2025-11-20 05:32:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:32:31] Checking for apptainer binary...
[2025-11-20 05:32:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:32:31] Running /usr/bin/apptainer --version
[2025-11-20 05:32:31] apptainer version 1.4.1-1.el9
[2025-11-20 05:32:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:32:32] wns0012.triumf.lcg
[2025-11-20 05:32:32] apptainer works
[2025-11-20 05:32:32] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:32:32] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:32:32] Starting ATLAS job with PandaID=6893851207
[2025-11-20 05:32:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 05:39:12]  *** The last 200 lines of the pilot log: ***
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | wrong length of table data, x=[1763645627.0, 1763645688.0, 1763645749.0], y=[24465.0, 696034.0, 430721.0] (must be same and length>=4)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | ..............................
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | . Timing measurements:
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . get job = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . initial setup = 4 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . payload setup = 15 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . stage-in = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . payload execution = 172 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . stage-out = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . log creation = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | ..............................
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893851207/pilotlog.txt
[2025-11-20 05:39:12] 2025-11-20 13:38:40,378 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 05:39:12] - Log from pilotlog.txt -
[2025-11-20 05:39:12] 2025-11-20 13:38:40,362 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893851207/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,362 | INFO     | extracted standard info from prmon json
[2025-11-20 05:39:12] 2025-11-20 13:38:40,362 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | wrong length of table data, x=[1763645627.0, 1763645688.0, 1763645749.0], y=[24465.0, 696034.0, 430721.0] (must be same and length>=4)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | ..............................
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | . Timing measurements:
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . get job = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . initial setup = 4 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . payload setup = 15 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . stage-in = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . payload execution = 172 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . stage-out = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . log creation = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | ..............................
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893851207/pilotlog.txt
[2025-11-20 05:39:12] 2025-11-20 13:38:40,378 | WARNING  | 
[2025-11-20 05:39:12] [begin log extracts]
[2025-11-20 05:39:12] - Log from pilotlog.txt -
[2025-11-20 05:39:12] 2025-11-20 13:38:40,362 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893851207/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,362 | INFO     | extracted standard info from prmon json
[2025-11-20 05:39:12] 2025-11-20 13:38:40,362 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 05:39:12] 2025-11-20 13:38:40,363 | WARNING  | wrong length of table data, x=[1763645627.0, 1763645688.0, 1763645749.0], y=[24465.0, 696034.0, 430721.0] (must be same and length>=4)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | ..............................
[2025-11-20 05:39:12] 2025-11-20 13:38:40,364 | INFO     | . Timing measurements:
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . get job = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . initial setup = 4 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . payload setup = 15 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . stage-in = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . payload execution = 172 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . stage-out = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | . log creation = 0 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | ..............................
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:39:12] 2025-11-20 13:38:40,365 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893851207/pilotlog.txt
[2025-11-20 05:39:12] [end log extracts]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,379 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,379 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 05:39:12] 2025-11-20 13:38:40,456 | INFO     | 
[2025-11-20 05:39:12] 2025-11-20 13:38:40,456 | INFO     | job summary report
[2025-11-20 05:39:12] 2025-11-20 13:38:40,456 | INFO     | --------------------------------------------------
[2025-11-20 05:39:12] 2025-11-20 13:38:40,456 | INFO     | PanDA job id: 6893851207
[2025-11-20 05:39:12] 2025-11-20 13:38:40,456 | INFO     | task id: 47523449
[2025-11-20 05:39:12] 2025-11-20 13:38:40,456 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 05:36:21,243 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 05:39:12] 2025-11-20 13:38:40,456 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | pilot state: failed 
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | transexitcode: 65
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | exeerrorcode: 65
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | exitcode: 65
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | cpuconsumptiontime: 53 s
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | nevents: 0
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | neventsw: 0
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | pid: 589209
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | pgrp: 589209
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | corecount: 8
[2025-11-20 05:39:12] 2025-11-20 13:38:40,457 | INFO     | event service: False
[2025-11-20 05:39:12] 2025-11-20 13:38:40,458 | INFO     | sizes: {0: 2298633, 1: 2298832, 12: 2299122, 191: 2324537, 192: 2324513, 193: 2328831, 194: 2328987, 323: 2329153}
[2025-11-20 05:39:12] 2025-11-20 13:38:40,458 | INFO     | --------------------------------------------------
[2025-11-20 05:39:12] 2025-11-20 13:38:40,458 | INFO     | 
[2025-11-20 05:39:12] 2025-11-20 13:38:40,458 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 05:39:12] 2025-11-20 13:38:40,578 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,579 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,579 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,579 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,579 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,582 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,582 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,582 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,582 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,582 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,582 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | job 6893851207 has completed (purged errors)
[2025-11-20 05:39:12] 2025-11-20 13:38:40,583 | INFO     | overall cleanup function is called
[2025-11-20 05:39:12] 2025-11-20 13:38:41,592 | INFO     | --- collectZombieJob: --- 10, [589209]
[2025-11-20 05:39:12] 2025-11-20 13:38:41,592 | INFO     | zombie collector waiting for pid 589209
[2025-11-20 05:39:12] 2025-11-20 13:38:41,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 05:39:12] 2025-11-20 13:38:41,592 | INFO     | collected zombie processes
[2025-11-20 05:39:12] 2025-11-20 13:38:41,592 | INFO     | will attempt to kill all subprocesses of pid=589209
[2025-11-20 05:39:12] 2025-11-20 13:38:42,335 | INFO     | process IDs to be killed: [589209] (in reverse order)
[2025-11-20 05:39:12] 2025-11-20 13:38:42,408 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 05:39:12] 2025-11-20 13:38:42,409 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 05:39:12] 2025-11-20 13:38:42,417 | INFO     | did not find any defunct processes belonging to 589209
[2025-11-20 05:39:12] 2025-11-20 13:38:42,426 | INFO     | did not find any defunct processes belonging to 589209
[2025-11-20 05:39:12] 2025-11-20 13:38:42,426 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 05:39:12] 2025-11-20 13:38:42,427 | INFO     | ready for new job
[2025-11-20 05:39:12] 2025-11-20 13:38:42,427 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 05:39:12] 2025-11-20 13:38:42,429 | INFO     | ***************************************
[2025-11-20 05:39:12] 2025-11-20 13:38:42,429 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 05:39:12] 2025-11-20 13:38:42,429 | INFO     | ***************************************
[2025-11-20 05:39:12] 2025-11-20 13:38:42,429 | INFO     | 
[2025-11-20 05:39:12] 2025-11-20 13:38:42,454 | INFO     | architecture information:
[2025-11-20 05:39:12] 2025-11-20 13:38:42,481 | INFO     | executing command: cat /etc/os-release
[2025-11-20 05:39:12] 2025-11-20 13:38:42,614 | INFO     | cat /etc/os-release:
[2025-11-20 05:39:12] NAME="CentOS Linux"
[2025-11-20 05:39:12] VERSION="7 (Core)"
[2025-11-20 05:39:12] ID="centos"
[2025-11-20 05:39:12] ID_LIKE="rhel fedora"
[2025-11-20 05:39:12] VERSION_ID="7"
[2025-11-20 05:39:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 05:39:12] ANSI_COLOR="0;31"
[2025-11-20 05:39:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 05:39:12] HOME_URL="https://www.centos.org/"
[2025-11-20 05:39:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 05:39:12] 
[2025-11-20 05:39:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 05:39:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 05:39:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 05:39:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 05:39:12] 
[2025-11-20 05:39:12] 2025-11-20 13:38:42,614 | INFO     | ***************************************
[2025-11-20 05:39:12] 2025-11-20 13:38:43,118 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 05:39:12] 2025-11-20 13:38:43,254 | INFO     | sufficient remaining disk space (1103931375616 B)
[2025-11-20 05:39:12] 2025-11-20 13:38:43,255 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 05:39:12] 2025-11-20 13:38:43,255 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 05:39:12] 2025-11-20 13:38:43,255 | INFO     | update_server=False
[2025-11-20 05:39:12] 2025-11-20 13:38:43,255 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 05:39:12] 2025-11-20 13:38:43,255 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 05:39:12] 2025-11-20 13:38:43,256 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:39:12] 2025-11-20 13:38:43,256 | INFO     | aborting loop
[2025-11-20 05:39:12] 2025-11-20 13:38:43,472 | INFO     | all job control threads have been joined
[2025-11-20 05:39:12] 2025-11-20 13:38:43,608 | INFO     | all payload control threads have been joined
[2025-11-20 05:39:12] 2025-11-20 13:38:43,981 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 05:39:12] 2025-11-20 13:38:44,218 | INFO     | all data control threads have been joined
[2025-11-20 05:39:12] 2025-11-20 13:38:44,261 | INFO     | [job] retrieve thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:44,262 | INFO     | [job] job monitor thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:44,361 | INFO     | [job] validate thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:44,478 | INFO     | [job] control thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:44,562 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:44,624 | INFO     | [payload] control thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:44,959 | INFO     | [payload] failed_post thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:45,038 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:45,219 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:45,223 | INFO     | [data] copytool_in thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:45,225 | INFO     | [data] control thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:45,282 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:45,480 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:39:12] 2025-11-20 13:38:45,585 | INFO     | [payload] validate_post thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:45,997 | INFO     | [data] copytool_out thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:46,486 | INFO     | [job] queue monitor thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:47,264 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 05:39:12] 2025-11-20 13:38:55,730 | INFO     | [monitor] cgroup control has ended
[2025-11-20 05:39:12] 2025-11-20 13:38:56,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140342635337536)>', '<ExcThread(monitor, started 140342233896704)>']
[2025-11-20 05:39:12] 2025-11-20 13:39:01,780 | INFO     | all workflow threads have been joined
[2025-11-20 05:39:12] 2025-11-20 13:39:01,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 05:39:12] 2025-11-20 13:39:01,780 | INFO     | traces error code: 0
[2025-11-20 05:39:12] 2025-11-20 13:39:01,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 05:39:12] 2025-11-20 13:39:12,308 | INFO     | PID=582569 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 05:39:12] 2025-11-20 13:39:12,308 | INFO     | .. there are 33 such processes running
[2025-11-20 05:39:12] 2025-11-20 13:39:12,309 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 05:39:12] 2025-11-20 13:39:12,309 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 05:39:12] 2025-11-20 13:39:12,309 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 05:39:12] 2025-11-20 13:39:12,309 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 05:39:12] 2025-11-20 13:39:12,309 | INFO     | [monitor] control thread has ended
[2025-11-20 05:39:12] 2025-11-20 13:39:12,628 [wrapper] ==== pilot stdout END ====
[2025-11-20 05:39:12] 2025-11-20 13:39:12,631 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 05:39:12] 2025-11-20 13:39:12,633 [wrapper] pilotpid: 582569
[2025-11-20 05:39:12] 2025-11-20 13:39:12,635 [wrapper] Pilot exit status: 0
[2025-11-20 05:39:12] 2025-11-20 13:39:12,650 [wrapper] pandaids: 6893851207
[2025-11-20 05:39:12] 2025-11-20 13:39:12,697 [wrapper] cleanup supervisor_pilot  582575 582570
[2025-11-20 05:39:12] 2025-11-20 13:39:12,700 [wrapper] Test setup, not cleaning
[2025-11-20 05:39:12] 2025-11-20 13:39:12,702 [wrapper] apfmon messages muted
[2025-11-20 05:39:12] 2025-11-20 13:39:12,704 [wrapper] ==== wrapper stdout END ====
[2025-11-20 05:39:12] 2025-11-20 13:39:12,707 [wrapper] ==== wrapper stderr END ====
[2025-11-20 05:39:12]  *** Error codes and diagnostics ***
[2025-11-20 05:39:12]     "exeErrorCode": 65,
[2025-11-20 05:39:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 05:39:12]     "pilotErrorCode": 1305,
[2025-11-20 05:39:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 05:39:12]  *** Listing of results directory ***
[2025-11-20 05:39:12] total 406544
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc    576529 Nov 20 03:09 pilot3.tar.gz
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc      5112 Nov 20 03:34 queuedata.json
[2025-11-20 05:39:12] -rwx------. 1 boinc boinc     36292 Nov 20 03:34 runpilot2-wrapper.sh
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc       100 Nov 20 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 05:39:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 05:32 run_atlas
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc       105 Nov 20 05:32 job.xml
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc      6445 Nov 20 05:32 init_data.xml
[2025-11-20 05:39:12] -rw-r--r--. 2 boinc boinc 412082572 Nov 20 05:32 EVNT.47493127._000353.pool.root.1
[2025-11-20 05:39:12] -rw-r--r--. 2 boinc boinc     15847 Nov 20 05:32 start_atlas.sh
[2025-11-20 05:39:12] drwxrwx--x. 2 boinc boinc      4096 Nov 20 05:32 shared
[2025-11-20 05:39:12] -rw-r--r--. 2 boinc boinc    590100 Nov 20 05:32 input.tar.gz
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc         0 Nov 20 05:32 boinc_lockfile
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc      2786 Nov 20 05:32 pandaJob.out
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc    989448 Nov 20 05:32 agis_schedconf.cvmfs.json
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc   1526164 Nov 20 05:32 agis_ddmendpoints.agis.ALL.json
[2025-11-20 05:39:12] drwx------. 5 boinc boinc      4096 Nov 20 05:32 pilot3
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc       525 Nov 20 05:35 boinc_task_state.xml
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc      1003 Nov 20 05:36 memory_monitor_summary.json
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc     49667 Nov 20 05:36 log.47523449._003522.job.log.tgz.1
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc     10338 Nov 20 05:38 heartbeat.json
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc      8192 Nov 20 05:39 boinc_mmap_file
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc       822 Nov 20 05:39 pilotlog.txt
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc        95 Nov 20 05:39 pilot_heartbeat.json
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc        23 Nov 20 05:39 wrapper_checkpoint.txt
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc    109535 Nov 20 05:39 log.47523449._003522.job.log.1
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc       186 Nov 20 05:39 output.list
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc       620 Nov 20 05:39 runtime_log
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc    184320 Nov 20 05:39 result.tar.gz
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc      8634 Nov 20 05:39 runtime_log.err
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc       647 Nov 20 05:39 MJaMDmr6Hg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFeHKDmssBo2m.diag
[2025-11-20 05:39:12] -rw-r--r--. 1 boinc boinc      2133 Nov 20 05:39 stderr.txt
[2025-11-20 05:39:12] No HITS result produced
[2025-11-20 05:39:12]  *** Contents of shared directory: ***
[2025-11-20 05:39:12] total 403208
[2025-11-20 05:39:12] -rw-r--r--. 2 boinc boinc 412082572 Nov 20 05:32 ATLAS.root_0
[2025-11-20 05:39:12] -rw-r--r--. 2 boinc boinc     15847 Nov 20 05:32 start_atlas.sh
[2025-11-20 05:39:12] -rw-r--r--. 2 boinc boinc    590100 Nov 20 05:32 input.tar.gz
[2025-11-20 05:39:12] -rw-------. 1 boinc boinc    184320 Nov 20 05:39 result.tar.gz
05:39:14 (578540): run_atlas exited; CPU time 56.643482
05:39:14 (578540): called boinc_finish(0)

</stderr_txt>
]]>

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