Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:03:16 (4116836): wrapper (7.7.26015): starting
18:03:16 (4116836): wrapper: running run_atlas (--nthreads 2)
[2025-11-24 18:03:16] Arguments: --nthreads 2
[2025-11-24 18:03:16] Threads: 2
[2025-11-24 18:03:16] Checking for CVMFS
[2025-11-24 18:03:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 18:03:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 18:03:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 18:03:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 18:03:17] 2.9.2.0 3080669 8808 58180 153252 2 81 35634788 36864000 0 130560 0 2840070 99.914 469197 6497 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 18:03:17] CVMFS is ok
[2025-11-24 18:03:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 18:03:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 18:03:17] Further information can be found at the LHC@home message board.
[2025-11-24 18:03:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 18:03:17] Checking for apptainer binary...
[2025-11-24 18:03:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 18:03:17] Running /usr/bin/apptainer --version
[2025-11-24 18:03:17] apptainer version 1.4.2-1.1
[2025-11-24 18:03:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 18:03:17] itA173
[2025-11-24 18:03:17] apptainer works
[2025-11-24 18:03:17] Set ATHENA_PROC_NUMBER=2
[2025-11-24 18:03:17] Set ATHENA_CORE_NUMBER=2
[2025-11-24 18:03:17] Starting ATLAS job with PandaID=6893835011
[2025-11-24 18:03:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:00:37]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:00:37] 2025-11-25 04:59:58,339 | INFO     | time since job start (42987s) is within the limit (172800.0s)
[2025-11-25 06:00:37] 2025-11-25 04:59:59,846 | INFO     | monitor loop #3280: job 0:6893835011 is in state 'finished'
[2025-11-25 06:00:37] 2025-11-25 04:59:59,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,345 | INFO     | time since job start (42989s) is within the limit (172800.0s)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,740 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 06:00:37] 2025-11-25 05:00:00,741 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 4575.928999999999
[2025-11-25 06:00:37] 2025-11-25 05:00:00,742 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893835011/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,742 | INFO     | extracted standard info from prmon json
[2025-11-25 06:00:37] 2025-11-25 05:00:00,742 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 06:00:37] 2025-11-25 05:00:00,742 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 06:00:37] 2025-11-25 05:00:00,746 | INFO     | fitting pss+swap vs Time
[2025-11-25 06:00:37] 2025-11-25 05:00:00,746 | INFO     | sum of square deviations: 108653795360.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,750 | INFO     | sum of deviations: 322230330291.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,750 | INFO     | mean x: 1764025312.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,750 | INFO     | mean y: 2018076.2085106382
[2025-11-25 06:00:37] 2025-11-25 05:00:00,750 | INFO     | intersect: -5229483106.461675
[2025-11-25 06:00:37] 2025-11-25 05:00:00,750 | INFO     | chi2: 4.141385071462811
[2025-11-25 06:00:37] 2025-11-25 05:00:00,751 | INFO     | sum of square deviations: 106358366275.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,755 | INFO     | sum of deviations: 412176208829.9999
[2025-11-25 06:00:37] 2025-11-25 05:00:00,755 | INFO     | mean x: 1764025159.5
[2025-11-25 06:00:37] 2025-11-25 05:00:00,755 | INFO     | mean y: 2024032.3028571429
[2025-11-25 06:00:37] 2025-11-25 05:00:00,755 | INFO     | intersect: -6834196078.896343
[2025-11-25 06:00:37] 2025-11-25 05:00:00,755 | INFO     | chi2: 2.554338291849937
[2025-11-25 06:00:37] 2025-11-25 05:00:00,755 | INFO     | current chi2=2.554338291849937 (change=38.32164245118846 %)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,755 | INFO     | sum of square deviations: 104095495940.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,759 | INFO     | sum of deviations: 408237585290.9999
[2025-11-25 06:00:37] 2025-11-25 05:00:00,759 | INFO     | mean x: 1764025007.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,759 | INFO     | mean y: 2023766.998561151
[2025-11-25 06:00:37] 2025-11-25 05:00:00,759 | INFO     | intersect: -6916059505.938667
[2025-11-25 06:00:37] 2025-11-25 05:00:00,760 | INFO     | chi2: 2.5531804579849124
[2025-11-25 06:00:37] 2025-11-25 05:00:00,760 | INFO     | current chi2=2.5531804579849124 (change=0.04532813326719219 %)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,760 | INFO     | right removable region: 694
[2025-11-25 06:00:37] 2025-11-25 05:00:00,760 | INFO     | sum of square deviations: 106358366275.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,764 | INFO     | sum of deviations: 184737705200.50003
[2025-11-25 06:00:37] 2025-11-25 05:00:00,764 | INFO     | mean x: 1764025464.5
[2025-11-25 06:00:37] 2025-11-25 05:00:00,764 | INFO     | mean y: 2027202.3242857142
[2025-11-25 06:00:37] 2025-11-25 05:00:00,764 | INFO     | intersect: -3061972628.0640097
[2025-11-25 06:00:37] 2025-11-25 05:00:00,764 | INFO     | chi2: 1.9958793910178665
[2025-11-25 06:00:37] 2025-11-25 05:00:00,764 | INFO     | current chi2=1.9958793910178665 (change=51.80647641845857 %)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,765 | INFO     | sum of square deviations: 104095495940.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,769 | INFO     | sum of deviations: 144147742079.00006
[2025-11-25 06:00:37] 2025-11-25 05:00:00,769 | INFO     | mean x: 1764025617.0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,769 | INFO     | mean y: 2029928.4158273381
[2025-11-25 06:00:37] 2025-11-25 05:00:00,769 | INFO     | intersect: -2440730033.1355405
[2025-11-25 06:00:37] 2025-11-25 05:00:00,769 | INFO     | chi2: 1.69104256376708
[2025-11-25 06:00:37] 2025-11-25 05:00:00,769 | INFO     | current chi2=1.69104256376708 (change=15.273309029726716 %)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,769 | INFO     | left removable region: 20
[2025-11-25 06:00:37] 2025-11-25 05:00:00,770 | INFO     | sum of square deviations: 94941733612.5
[2025-11-25 06:00:37] 2025-11-25 05:00:00,773 | INFO     | sum of deviations: 201591182920.5
[2025-11-25 06:00:37] 2025-11-25 05:00:00,773 | INFO     | mean x: 1764025586.5
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | mean y: 2037931.9005934717
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | intersect: -3743543606.9406567
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | chi2: 0.06474185994772302
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | current memory leak: 2.12 B/s (using 674 data points, chi2=0.06)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | could have reported an average CPU frequency of 4515 MHz (27 samples)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | ..............................
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | . Timing measurements:
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | . get job = 0 s
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | . initial setup = 1 s
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | . payload setup = 7 s
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | . stage-in = 0 s
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | . payload execution = 42950 s
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | . stage-out = 1 s
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | . log creation = 0 s
[2025-11-25 06:00:37] 2025-11-25 05:00:00,774 | INFO     | ..............................
[2025-11-25 06:00:37] 2025-11-25 05:00:00,953 | INFO     | 
[2025-11-25 06:00:37] 2025-11-25 05:00:00,954 | INFO     | job summary report
[2025-11-25 06:00:37] 2025-11-25 05:00:00,954 | INFO     | --------------------------------------------------
[2025-11-25 06:00:37] 2025-11-25 05:00:00,954 | INFO     | PanDA job id: 6893835011
[2025-11-25 06:00:37] 2025-11-25 05:00:00,954 | INFO     | task id: 47523449
[2025-11-25 06:00:37] 2025-11-25 05:00:00,954 | INFO     | errors: (none)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,955 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 06:00:37] 2025-11-25 05:00:00,955 | INFO     | pilot state: finished 
[2025-11-25 06:00:37] 2025-11-25 05:00:00,955 | INFO     | transexitcode: 0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,955 | INFO     | exeerrorcode: 0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,955 | INFO     | exeerrordiag: 
[2025-11-25 06:00:37] 2025-11-25 05:00:00,955 | INFO     | exitcode: 0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,955 | INFO     | exitmsg: OK
[2025-11-25 06:00:37] 2025-11-25 05:00:00,956 | INFO     | cpuconsumptiontime: 85122 s
[2025-11-25 06:00:37] 2025-11-25 05:00:00,956 | INFO     | nevents: 1000
[2025-11-25 06:00:37] 2025-11-25 05:00:00,956 | INFO     | neventsw: 0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,956 | INFO     | pid: 4126964
[2025-11-25 06:00:37] 2025-11-25 05:00:00,956 | INFO     | pgrp: 4126964
[2025-11-25 06:00:37] 2025-11-25 05:00:00,956 | INFO     | corecount: 2
[2025-11-25 06:00:37] 2025-11-25 05:00:00,956 | INFO     | event service: False
[2025-11-25 06:00:37] 2025-11-25 05:00:00,956 | INFO     | sizes: {0: 2284309, 7: 2284571, 11: 2284599, 42961: 2330287, 42962: 2330286, 42963: 2339526, 42972: 2339716}
[2025-11-25 06:00:37] 2025-11-25 05:00:00,957 | INFO     | --------------------------------------------------
[2025-11-25 06:00:37] 2025-11-25 05:00:00,957 | INFO     | 
[2025-11-25 06:00:37] 2025-11-25 05:00:00,957 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 06:00:37] 2025-11-25 05:00:00,969 | INFO     | job 6893835011 has completed (purged errors)
[2025-11-25 06:00:37] 2025-11-25 05:00:00,970 | INFO     | overall cleanup function is called
[2025-11-25 06:00:37] 2025-11-25 05:00:01,977 | INFO     | --- collectZombieJob: --- 10, [4126964]
[2025-11-25 06:00:37] 2025-11-25 05:00:01,977 | INFO     | zombie collector waiting for pid 4126964
[2025-11-25 06:00:37] 2025-11-25 05:00:01,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 06:00:37] 2025-11-25 05:00:01,978 | INFO     | collected zombie processes
[2025-11-25 06:00:37] 2025-11-25 05:00:01,978 | INFO     | will attempt to kill all subprocesses of pid=4126964
[2025-11-25 06:00:37] 2025-11-25 05:00:02,015 | INFO     | process IDs to be killed: [4126964] (in reverse order)
[2025-11-25 06:00:37] 2025-11-25 05:00:02,037 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:00:37] 2025-11-25 05:00:02,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:00:37] 2025-11-25 05:00:02,038 | INFO     | did not find any defunct processes belonging to 4126964
[2025-11-25 06:00:37] 2025-11-25 05:00:02,039 | INFO     | did not find any defunct processes belonging to 4126964
[2025-11-25 06:00:37] 2025-11-25 05:00:02,039 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:00:37] 2025-11-25 05:00:02,039 | INFO     | ready for new job
[2025-11-25 06:00:37] 2025-11-25 05:00:02,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:00:37] 2025-11-25 05:00:02,040 | INFO     | ***************************************
[2025-11-25 06:00:37] 2025-11-25 05:00:02,040 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:00:37] 2025-11-25 05:00:02,041 | INFO     | ***************************************
[2025-11-25 06:00:37] 2025-11-25 05:00:02,041 | INFO     | 
[2025-11-25 06:00:37] 2025-11-25 05:00:02,041 | INFO     | architecture information:
[2025-11-25 06:00:37] 2025-11-25 05:00:02,041 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:00:37] 2025-11-25 05:00:02,049 | INFO     | cat /etc/os-release:
[2025-11-25 06:00:37] NAME="CentOS Linux"
[2025-11-25 06:00:37] VERSION="7 (Core)"
[2025-11-25 06:00:37] ID="centos"
[2025-11-25 06:00:37] ID_LIKE="rhel fedora"
[2025-11-25 06:00:37] VERSION_ID="7"
[2025-11-25 06:00:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:00:37] ANSI_COLOR="0;31"
[2025-11-25 06:00:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:00:37] HOME_URL="https://www.centos.org/"
[2025-11-25 06:00:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:00:37] 
[2025-11-25 06:00:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:00:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:00:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:00:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:00:37] 
[2025-11-25 06:00:37] 2025-11-25 05:00:02,049 | INFO     | ***************************************
[2025-11-25 06:00:37] 2025-11-25 05:00:02,552 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-25 06:00:37] 2025-11-25 05:00:02,582 | INFO     | sufficient remaining disk space (220608856064 B)
[2025-11-25 06:00:37] 2025-11-25 05:00:02,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:00:37] 2025-11-25 05:00:02,582 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:00:37] 2025-11-25 05:00:02,583 | INFO     | update_server=False
[2025-11-25 06:00:37] 2025-11-25 05:00:02,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:00:37] 2025-11-25 05:00:02,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:00:37] 2025-11-25 05:00:02,584 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:00:37] 2025-11-25 05:00:02,648 | INFO     | all job control threads have been joined
[2025-11-25 06:00:37] 2025-11-25 05:00:02,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:00:37] 2025-11-25 05:00:03,060 | INFO     | all data control threads have been joined
[2025-11-25 06:00:37] 2025-11-25 05:00:03,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:00:37] 2025-11-25 05:00:03,356 | INFO     | aborting loop
[2025-11-25 06:00:37] 2025-11-25 05:00:03,587 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:03,587 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:03,654 | INFO     | [job] control thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:03,694 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:03,742 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:03,752 | INFO     | all payload control threads have been joined
[2025-11-25 06:00:37] 2025-11-25 05:00:03,773 | INFO     | [job] validate thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:03,835 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:04,004 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:04,066 | INFO     | [data] control thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:04,363 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:04,504 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:04,590 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:04,758 | INFO     | [payload] control thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:04,870 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:04,954 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:06,834 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:00:37] 2025-11-25 05:00:31,891 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:00:37] 2025-11-25 05:00:32,323 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140547264649024)>', '<ExcThread(monitor, started 140546488133376)>']
[2025-11-25 06:00:37] 2025-11-25 05:00:33,446 | INFO     | PID=4120544 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 06:00:37] 2025-11-25 05:00:33,446 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:00:37] 2025-11-25 05:00:33,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:00:37] 2025-11-25 05:00:33,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:00:37] 2025-11-25 05:00:33,446 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:00:37] 2025-11-25 05:00:33,447 | INFO     | [monitor] control thread has ended
[2025-11-25 06:00:37] 2025-11-25 05:00:37,349 | INFO     | all workflow threads have been joined
[2025-11-25 06:00:37] 2025-11-25 05:00:37,349 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:00:37] 2025-11-25 05:00:37,350 | INFO     | traces error code: 0
[2025-11-25 06:00:37] 2025-11-25 05:00:37,350 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:00:37] 2025-11-25 05:00:37,393 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:00:37] 2025-11-25 05:00:37,396 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:00:37] 2025-11-25 05:00:37,398 [wrapper] pilotpid: 4120544
[2025-11-25 06:00:37] 2025-11-25 05:00:37,400 [wrapper] Pilot exit status: 0
[2025-11-25 06:00:37] 2025-11-25 05:00:37,407 [wrapper] pandaids: 6893835011
[2025-11-25 06:00:37] 2025-11-25 05:00:37,421 [wrapper] cleanup supervisor_pilot    3813 4120545
[2025-11-25 06:00:37] 2025-11-25 05:00:37,423 [wrapper] Test setup, not cleaning
[2025-11-25 06:00:37] 2025-11-25 05:00:37,425 [wrapper] apfmon messages muted
[2025-11-25 06:00:37] 2025-11-25 05:00:37,427 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:00:37] 2025-11-25 05:00:37,429 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:00:37]  *** Error codes and diagnostics ***
[2025-11-25 06:00:37]     "exeErrorCode": 0,
[2025-11-25 06:00:37]     "exeErrorDiag": "",
[2025-11-25 06:00:37]     "pilotErrorCode": 0,
[2025-11-25 06:00:37]     "pilotErrorDiag": "",
[2025-11-25 06:00:37]  *** Listing of results directory ***
[2025-11-25 06:00:37] total 1308312
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-25 06:00:37] -rwx------ 1 boinc boinc     36292 Nov 20 11:14 runpilot2-wrapper.sh
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:15 queuedata.json
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc       100 Nov 24 18:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:00:37] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 18:03 run_atlas
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc       105 Nov 24 18:03 job.xml
[2025-11-25 06:00:37] -rw-r--r-- 2 boinc boinc 411924254 Nov 24 18:03 EVNT.47493127._000083.pool.root.1
[2025-11-25 06:00:37] -rw-r--r-- 2 boinc boinc    590099 Nov 24 18:03 input.tar.gz
[2025-11-25 06:00:37] -rw-r--r-- 2 boinc boinc     15847 Nov 24 18:03 start_atlas.sh
[2025-11-25 06:00:37] drwxrwx--x 2 boinc boinc      4096 Nov 24 18:03 shared
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc         0 Nov 24 18:03 boinc_setup_complete
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc      6280 Nov 24 18:03 init_data.xml
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc         0 Nov 24 18:03 boinc_lockfile
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc      2784 Nov 24 18:03 pandaJob.out
[2025-11-25 06:00:37] -rw------- 1 boinc boinc    991965 Nov 24 18:03 agis_schedconf.cvmfs.json
[2025-11-25 06:00:37] drwx------ 5 boinc boinc      4096 Nov 24 18:03 pilot3
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc       531 Nov 25 05:57 boinc_task_state.xml
[2025-11-25 06:00:37] -rw------- 1 boinc boinc 909403981 Nov 25 05:59 HITS.47523449._000828.pool.root.1
[2025-11-25 06:00:37] -rw------- 1 boinc boinc        95 Nov 25 05:59 pilot_heartbeat.json
[2025-11-25 06:00:37] -rw------- 1 boinc boinc      1026 Nov 25 05:59 memory_monitor_summary.json
[2025-11-25 06:00:37] -rw------- 1 boinc boinc   1516227 Nov 25 05:59 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:00:37] -rw------- 1 boinc boinc   1197114 Nov 25 05:59 log.47523449._000828.job.log.tgz.1
[2025-11-25 06:00:37] -rw------- 1 boinc boinc      8561 Nov 25 06:00 heartbeat.json
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc        28 Nov 25 06:00 wrapper_checkpoint.txt
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc      8192 Nov 25 06:00 boinc_mmap_file
[2025-11-25 06:00:37] -rw------- 1 boinc boinc      4752 Nov 25 06:00 pilotlog.txt
[2025-11-25 06:00:37] -rw------- 1 boinc boinc   6037437 Nov 25 06:00 log.47523449._000828.job.log.1
[2025-11-25 06:00:37] -rw------- 1 boinc boinc       353 Nov 25 06:00 output.list
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc       620 Nov 25 06:00 runtime_log
[2025-11-25 06:00:37] -rw------- 1 boinc boinc   7249920 Nov 25 06:00 result.tar.gz
[2025-11-25 06:00:37] -rw------- 1 boinc boinc       665 Nov 25 06:00 zm6MDmcrGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDFHKDm6ZimAn.diag
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc      8898 Nov 25 06:00 runtime_log.err
[2025-11-25 06:00:37] -rw-r--r-- 1 boinc boinc     21264 Nov 25 06:00 stderr.txt
[2025-11-25 06:00:37] HITS file was successfully produced:
[2025-11-25 06:00:37] -rw------- 1 boinc boinc 909403981 Nov 25 05:59 shared/HITS.pool.root.1
[2025-11-25 06:00:37]  *** Contents of shared directory: ***
[2025-11-25 06:00:37] total 1298048
[2025-11-25 06:00:37] -rw-r--r-- 2 boinc boinc 411924254 Nov 24 18:03 ATLAS.root_0
[2025-11-25 06:00:37] -rw-r--r-- 2 boinc boinc    590099 Nov 24 18:03 input.tar.gz
[2025-11-25 06:00:37] -rw-r--r-- 2 boinc boinc     15847 Nov 24 18:03 start_atlas.sh
[2025-11-25 06:00:37] -rw------- 1 boinc boinc 909403981 Nov 25 05:59 HITS.pool.root.1
[2025-11-25 06:00:37] -rw------- 1 boinc boinc   7249920 Nov 25 06:00 result.tar.gz
06:00:39 (4116836): run_atlas exited; CPU time 85247.418252
06:00:39 (4116836): called boinc_finish(0)

</stderr_txt>
]]>

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