Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-26 21:31:40 (18220): vboxwrapper version 26210
2025-11-26 21:31:40 (18220): BOINC client version: 8.0.2
2025-11-26 21:31:42 (18220): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-11-26 21:31:42 (18220): Successfully copied 'init_data.xml' to the shared directory.
2025-11-26 21:31:42 (18220): Create VM. (boinc_0c76896a419f51fd, slot#0)
2025-11-26 21:31:43 (18220): Setting Memory Size for VM. (4400MB)
2025-11-26 21:31:43 (18220): Setting CPU Count for VM. (4)
2025-11-26 21:31:43 (18220): Setting Chipset Options for VM.
2025-11-26 21:31:43 (18220): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-26 21:31:44 (18220): Setting Boot Options for VM.
2025-11-26 21:31:45 (18220): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-26 21:31:45 (18220): Enabling VM Network Access.
2025-11-26 21:31:45 (18220): Disabling USB Support for VM.
2025-11-26 21:31:45 (18220): Disabling COM Port Support for VM.
2025-11-26 21:31:46 (18220): Disabling LPT Port Support for VM.
2025-11-26 21:31:46 (18220): Disabling Audio Support for VM.
2025-11-26 21:31:46 (18220): Disabling Clipboard Support for VM.
2025-11-26 21:31:46 (18220): Disabling Drag and Drop Support for VM.
2025-11-26 21:31:47 (18220): Adding storage controller(s) to VM.
2025-11-26 21:31:47 (18220): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-26 21:31:49 (18220): Adding VirtualBox Guest Additions to VM.
2025-11-26 21:31:49 (18220): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-26 21:31:50 (18220): forwarding host port 52909 to guest port 80
2025-11-26 21:31:50 (18220): Enabling remote desktop for VM.
2025-11-26 21:31:50 (18220): Required extension pack not installed, remote desktop not enabled.
2025-11-26 21:31:50 (18220): Enabling shared directory for VM.
2025-11-26 21:31:51 (18220): Starting VM using VBoxManage interface. (boinc_0c76896a419f51fd, slot#0)
2025-11-26 21:31:57 (18220): Successfully started VM. (PID = '34200')
2025-11-26 21:31:57 (18220): Reporting VM Process ID to BOINC.
2025-11-26 21:31:57 (18220): Guest Log: BIOS: VirtualBox 7.0.20
2025-11-26 21:31:57 (18220): Guest Log: CPUID EDX: 0x178bfbff
2025-11-26 21:31:57 (18220): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-26 21:31:57 (18220): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-26 21:31:57 (18220): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-26 21:31:57 (18220): Detected: Web Application Enabled (http://localhost:52909)
2025-11-26 21:31:57 (18220): Preference change detected
2025-11-26 21:31:57 (18220): Setting CPU throttle for VM. (100%)
2025-11-26 21:31:57 (18220): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-26 21:31:59 (18220): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-26 21:31:59 (18220): Guest Log: BIOS: Booting from Hard Disk...
2025-11-26 21:32:02 (18220): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-26 21:32:02 (18220): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-26 21:32:02 (18220): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-26 21:32:08 (18220): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-26 21:32:08 (18220): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-26 21:32:14 (18220): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-26 21:32:14 (18220): Guest Log: 00:00:00.000151 main     Log opened 2025-11-26T21:32:12.810674000Z
2025-11-26 21:32:14 (18220): Guest Log: 00:00:00.000242 main     OS Product: Linux
2025-11-26 21:32:14 (18220): Guest Log: 00:00:00.000277 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-26 21:32:14 (18220): Guest Log: 00:00:00.000306 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-26 21:32:14 (18220): Guest Log: 00:00:00.000351 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-26 21:32:14 (18220): Guest Log: 00:00:00.000352 main     Process ID: 1307
2025-11-26 21:32:14 (18220): Guest Log: 00:00:00.000352 main     Package type: LINUX_64BITS_GENERIC
2025-11-26 21:32:14 (18220): Guest Log: 00:00:00.001343 main     5.2.32 r132073 started. Verbose level = 0
2025-11-26 21:32:14 (18220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-26 21:32:14 (18220): Guest Log: [INFO] Mounting shared directory
2025-11-26 21:32:14 (18220): Guest Log: [INFO] Checking for init_data.xml
2025-11-26 21:32:18 (18220): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-26 21:32:18 (18220): Guest Log: [INFO] Detected branch: prod
2025-11-26 21:32:19 (18220): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-26 21:32:19 (18220): Guest Log: Copying input files
2025-11-26 21:32:21 (18220): Guest Log: Copied input files into RunAtlas.
2025-11-26 21:32:21 (18220): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-26 21:32:21 (18220): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-26 21:32:21 (18220): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-26 21:32:21 (18220): Guest Log: Further information can be found at the LHC@home message board.
2025-11-26 21:32:24 (18220): Guest Log: 00:00:10.004104 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 331 566 000ns (GuestNow=1 764 189 143 481 512 000 ns GuestLast=1 764 192 732 813 078 000 ns fSetTimeLastLoop=true )
2025-11-26 21:32:31 (18220): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-26 21:32:31 (18220): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-26 21:32:31 (18220): Guest Log: 2.6.3.0 1582 0 32180 153334 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-26 21:32:32 (18220): Guest Log: copied the webapp to /var/www
2025-11-26 21:32:32 (18220): Guest Log: ATHENA_PROC_NUMBER=4
2025-11-26 21:32:32 (18220): Guest Log: ATHENA_CORE_NUMBER=4
2025-11-26 21:32:33 (18220): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-26 21:32:33 (18220): Guest Log:  *** Starting ATLAS job. (PandaID=6893834041 taskID=47523449) ***
2025-11-26 23:18:37 (18220): Status Report: Elapsed Time: '6000.373220'
2025-11-26 23:18:37 (18220): Status Report: CPU Time: '22557.984375'
2025-11-27 01:02:15 (18220): Status Report: Elapsed Time: '12001.223526'
2025-11-27 01:02:15 (18220): Status Report: CPU Time: '46622.812500'
2025-11-27 02:45:46 (18220): Status Report: Elapsed Time: '18001.902039'
2025-11-27 02:45:46 (18220): Status Report: CPU Time: '70682.312500'
2025-11-27 04:29:32 (18220): Status Report: Elapsed Time: '24006.877901'
2025-11-27 04:29:32 (18220): Status Report: CPU Time: '94709.546875'
2025-11-27 06:13:06 (18220): Status Report: Elapsed Time: '30007.581961'
2025-11-27 06:13:06 (18220): Status Report: CPU Time: '118690.953125'
2025-11-27 07:56:37 (18220): Status Report: Elapsed Time: '36008.505493'
2025-11-27 07:56:37 (18220): Status Report: CPU Time: '142648.062500'
2025-11-27 09:41:11 (18220): Status Report: Elapsed Time: '42009.350380'
2025-11-27 09:41:11 (18220): Status Report: CPU Time: '166856.859375'
2025-11-27 11:24:53 (18220): Status Report: Elapsed Time: '48014.264469'
2025-11-27 11:24:53 (18220): Status Report: CPU Time: '190849.593750'
2025-11-27 13:08:35 (18220): Status Report: Elapsed Time: '54014.873857'
2025-11-27 13:08:35 (18220): Status Report: CPU Time: '214727.156250'
2025-11-27 14:52:11 (18220): Status Report: Elapsed Time: '60015.382572'
2025-11-27 14:52:11 (18220): Status Report: CPU Time: '238601.078125'
2025-11-27 15:17:20 (18220): Guest Log:  *** Job finished ***
2025-11-27 15:17:20 (18220): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:12,274 | INFO     | all workflow threads have been joined
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:12,274 | INFO     | end of generic workflow (traces error code: 0)
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:12,274 | INFO     | traces error code: 0
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:12,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,130 | INFO     | PID=5986 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,131 | INFO     | found 0 job(s) in 20 queues
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,131 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,131 | INFO     | [monitor] control thread has ended
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,214 [wrapper] ==== pilot stdout END ====
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,218 [wrapper] ==== wrapper stdout RESUME ====
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,222 [wrapper] pilotpid: 5986
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,225 [wrapper] Pilot exit status: 0
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,239 [wrapper] pandaids: 6893834041
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,263 [wrapper] cleanup supervisor_pilot 27726 5987
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,268 [wrapper] Test setup, not cleaning
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,272 [wrapper] apfmon messages muted
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,276 [wrapper] ==== wrapper stdout END ====
2025-11-27 15:17:20 (18220): Guest Log: 2025-11-27 14:17:18,280 [wrapper] ==== wrapper stderr END ====
2025-11-27 15:17:20 (18220): Guest Log:  *** Error codes and diagnostics ***
2025-11-27 15:17:20 (18220): Guest Log:     "exeErrorCode": 0,
2025-11-27 15:17:20 (18220): Guest Log:     "exeErrorDiag": "",
2025-11-27 15:17:20 (18220): Guest Log:     "pilotErrorCode": 0,
2025-11-27 15:17:20 (18220): Guest Log:     "pilotErrorDiag": "",
2025-11-27 15:17:20 (18220): Guest Log:  *** Listing of results directory ***
2025-11-27 15:17:20 (18220): Guest Log: total 907520
2025-11-27 15:17:20 (18220): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 20 10:06 pilot3.tar.gz
2025-11-27 15:17:20 (18220): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 20 10:12 runpilot2-wrapper.sh
2025-11-27 15:17:20 (18220): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 20 10:13 queuedata.json
2025-11-27 15:17:20 (18220): Guest Log: -rwxr-xr-x. 1 atlas atlas      8756 Nov 26 20:32 init_data.xml
2025-11-27 15:17:20 (18220): Guest Log: -rwxr-xr-x. 1 atlas atlas    590101 Nov 26 20:32 input.tar.gz
2025-11-27 15:17:20 (18220): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Nov 26 20:32 start_atlas.sh
2025-11-27 15:17:20 (18220): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 26 20:32 EVNT.47493127._000048.pool.root.1 -> /data/./ATLAS.root_0
2025-11-27 15:17:20 (18220): Guest Log: -rw-r--r--. 1 atlas atlas      2784 Nov 26 20:32 pandaJob.out
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas    991538 Nov 26 20:33 agis_schedconf.cvmfs.json
2025-11-27 15:17:20 (18220): Guest Log: drwx------. 5 atlas atlas      4096 Nov 26 20:33 pilot3
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas 905212035 Nov 27 14:16 HITS.47523449._000480.pool.root.1
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas      1037 Nov 27 14:16 memory_monitor_summary.json
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas   1516240 Nov 27 14:16 agis_ddmendpoints.agis.ALL.json
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas   1728701 Nov 27 14:16 log.47523449._000480.job.log.tgz.1
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas        95 Nov 27 14:16 pilot_heartbeat.json
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas      8673 Nov 27 14:16 heartbeat.json
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas       744 Nov 27 14:17 pilotlog.txt
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas   8392981 Nov 27 14:17 log.47523449._000480.job.log.1
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas       353 Nov 27 14:17 output.list
2025-11-27 15:17:20 (18220): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 27 14:17 runtime_log
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas  10137600 Nov 27 14:17 result.tar.gz
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas       663 Nov 27 14:17 zGvNDmspGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqBHKDm8I9aOn.diag
2025-11-27 15:17:20 (18220): Guest Log: -rw-r--r--. 1 atlas atlas      8750 Nov 27 14:17 runtime_log.err
2025-11-27 15:17:20 (18220): Guest Log: Looking for outputfile HITS.47523449._000480.pool.root.1
2025-11-27 15:17:20 (18220): Guest Log: HITS file was successfully produced
2025-11-27 15:17:20 (18220): Guest Log: -rw-------. 1 atlas atlas 905212035 Nov 27 14:16 /home/atlas/RunAtlas/HITS.47523449._000480.pool.root.1
2025-11-27 15:17:23 (18220): Guest Log: Successfully finished the ATLAS job!
2025-11-27 15:17:23 (18220): Guest Log: Copying the results back to the shared directory!
2025-11-27 15:17:23 (18220): Guest Log:  *** Contents of shared directory: ***
2025-11-27 15:17:23 (18220): Guest Log: total 1292328
2025-11-27 15:17:23 (18220): Guest Log: -rwxrwxrwx. 1 root root 407364961 Nov 26 20:31 ATLAS.root_0
2025-11-27 15:17:23 (18220): Guest Log: -rwxrwxrwx. 1 root root 905212035 Nov 27 14:17 HITS.pool.root.1
2025-11-27 15:17:23 (18220): Guest Log: -rwxrwxrwx. 1 root root      8756 Nov 26 20:31 init_data.xml
2025-11-27 15:17:23 (18220): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 20 13:24 input.tar.gz
2025-11-27 15:17:23 (18220): Guest Log: -rwxrwxrwx. 1 root root  10137600 Nov 27 14:17 result.tar.gz
2025-11-27 15:17:23 (18220): Guest Log: -rwxrwxrwx. 1 root root     15847 Nov 20 13:24 start_atlas.sh
2025-11-27 15:17:23 (18220): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-27 15:17:23 (18220): VM Completion File Detected.
2025-11-27 15:17:23 (18220): Powering off VM.
2025-11-27 15:17:24 (18220): Successfully stopped VM.
2025-11-27 15:17:24 (18220): Deregistering VM. (boinc_0c76896a419f51fd, slot#0)
2025-11-27 15:17:24 (18220): Removing network bandwidth throttle group from VM.
2025-11-27 15:17:24 (18220): Removing VM from VirtualBox.
2025-11-27 15:17:29 (18220): called boinc_finish(0)

</stderr_txt>
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