Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:36:53 (1456238): wrapper (7.7.26015): starting
05:36:53 (1456238): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:36:53] Arguments: --nthreads 8
[2025-11-20 05:36:53] Threads: 8
[2025-11-20 05:36:53] Checking for CVMFS
[2025-11-20 05:36:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:36:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:36:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:36:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:36:53] 2.11.3.0 1855 86149 203344 153083 2 198 37413394 45568001 16171 130560 0 569110940 99.854 250758610 19411 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 05:36:53] CVMFS is ok
[2025-11-20 05:36:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:36:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:36:53] Further information can be found at the LHC@home message board.
[2025-11-20 05:36:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:36:53] Checking for apptainer binary...
[2025-11-20 05:36:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:36:53] Running /usr/bin/apptainer --version
[2025-11-20 05:36:53] apptainer version 1.4.1-1.el9
[2025-11-20 05:36:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:36:54] wns0009.triumf.lcg
[2025-11-20 05:36:54] apptainer works
[2025-11-20 05:36:54] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:36:54] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:36:54] Starting ATLAS job with PandaID=6893850786
[2025-11-20 05:36:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 05:45:29]  *** The last 200 lines of the pilot log: ***
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 05:45:29] 2025-11-20 13:44:27,797 | WARNING  | wrong length of table data, x=[1763645933.0, 1763645994.0, 1763646055.0, 1763646116.0], y=[1168.0, 536470.0, 790153.0, 754714.0] (must be same and length>=4)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | ..............................
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . Timing measurements:
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . get job = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . initial setup = 4 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . payload setup = 35 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . stage-in = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . payload execution = 212 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . stage-out = 2 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . log creation = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | ..............................
[2025-11-20 05:45:29] 2025-11-20 13:44:27,799 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:45:29] 2025-11-20 13:44:27,799 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893850786/pilotlog.txt
[2025-11-20 05:45:29] 2025-11-20 13:44:27,938 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 05:45:29] - Log from pilotlog.txt -
[2025-11-20 05:45:29] 2025-11-20 13:44:27,795 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893850786/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | INFO     | extracted standard info from prmon json
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 05:45:29] 2025-11-20 13:44:27,797 | WARNING  | wrong length of table data, x=[1763645933.0, 1763645994.0, 1763646055.0, 1763646116.0], y=[1168.0, 536470.0, 790153.0, 754714.0] (must be same and length>=4)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | ..............................
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . Timing measurements:
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . get job = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . initial setup = 4 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . payload setup = 35 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . stage-in = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . payload execution = 212 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . stage-out = 2 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . log creation = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | ..............................
[2025-11-20 05:45:29] 2025-11-20 13:44:27,799 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:45:29] 2025-11-20 13:44:27,799 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893850786/pilotlog.txt
[2025-11-20 05:45:29] 2025-11-20 13:44:27,939 | WARNING  | 
[2025-11-20 05:45:29] [begin log extracts]
[2025-11-20 05:45:29] - Log from pilotlog.txt -
[2025-11-20 05:45:29] 2025-11-20 13:44:27,795 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893850786/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | INFO     | extracted standard info from prmon json
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 05:45:29] 2025-11-20 13:44:27,796 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 05:45:29] 2025-11-20 13:44:27,797 | WARNING  | wrong length of table data, x=[1763645933.0, 1763645994.0, 1763646055.0, 1763646116.0], y=[1168.0, 536470.0, 790153.0, 754714.0] (must be same and length>=4)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | ..............................
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . Timing measurements:
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . get job = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . initial setup = 4 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . payload setup = 35 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . stage-in = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . payload execution = 212 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . stage-out = 2 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | . log creation = 0 s
[2025-11-20 05:45:29] 2025-11-20 13:44:27,798 | INFO     | ..............................
[2025-11-20 05:45:29] 2025-11-20 13:44:27,799 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:45:29] 2025-11-20 13:44:27,799 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893850786/pilotlog.txt
[2025-11-20 05:45:29] [end log extracts]
[2025-11-20 05:45:29] 2025-11-20 13:44:27,939 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 05:45:29] 2025-11-20 13:44:27,940 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 05:45:29] 2025-11-20 13:44:28,356 | INFO     | 
[2025-11-20 05:45:29] 2025-11-20 13:44:28,356 | INFO     | job summary report
[2025-11-20 05:45:29] 2025-11-20 13:44:28,356 | INFO     | --------------------------------------------------
[2025-11-20 05:45:29] 2025-11-20 13:44:28,356 | INFO     | PanDA job id: 6893850786
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | task id: 47523449
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 05:42:01,320 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | pilot state: failed 
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | transexitcode: 65
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | exeerrorcode: 65
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | exitcode: 65
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | cpuconsumptiontime: 51 s
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | nevents: 0
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | neventsw: 0
[2025-11-20 05:45:29] 2025-11-20 13:44:28,357 | INFO     | pid: 1480427
[2025-11-20 05:45:29] 2025-11-20 13:44:28,358 | INFO     | pgrp: 1480427
[2025-11-20 05:45:29] 2025-11-20 13:44:28,358 | INFO     | corecount: 8
[2025-11-20 05:45:29] 2025-11-20 13:44:28,358 | INFO     | event service: False
[2025-11-20 05:45:29] 2025-11-20 13:44:28,358 | INFO     | sizes: {0: 2297973, 1: 2298655, 2: 2298683, 3: 2298882, 14: 2298882, 20: 2299172, 25: 2299328, 251: 2324797, 252: 2324801, 255: 2329175, 389: 2329313}
[2025-11-20 05:45:29] 2025-11-20 13:44:28,358 | INFO     | --------------------------------------------------
[2025-11-20 05:45:29] 2025-11-20 13:44:28,358 | INFO     | 
[2025-11-20 05:45:29] 2025-11-20 13:44:28,358 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 05:45:29] 2025-11-20 13:44:28,376 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,376 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,376 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,376 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,377 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,378 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 05:45:29] 2025-11-20 13:44:28,378 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,378 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 05:45:29] 2025-11-20 13:44:28,378 | INFO     | job 6893850786 has completed (purged errors)
[2025-11-20 05:45:29] 2025-11-20 13:44:28,378 | INFO     | overall cleanup function is called
[2025-11-20 05:45:29] 2025-11-20 13:44:29,387 | INFO     | --- collectZombieJob: --- 10, [1480427]
[2025-11-20 05:45:29] 2025-11-20 13:44:29,387 | INFO     | zombie collector waiting for pid 1480427
[2025-11-20 05:45:29] 2025-11-20 13:44:29,387 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 05:45:29] 2025-11-20 13:44:29,387 | INFO     | collected zombie processes
[2025-11-20 05:45:29] 2025-11-20 13:44:29,388 | INFO     | will attempt to kill all subprocesses of pid=1480427
[2025-11-20 05:45:29] 2025-11-20 13:44:30,627 | INFO     | process IDs to be killed: [1480427] (in reverse order)
[2025-11-20 05:45:29] 2025-11-20 13:44:31,277 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 05:45:29] 2025-11-20 13:44:31,277 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 05:45:29] 2025-11-20 13:44:31,332 | INFO     | did not find any defunct processes belonging to 1480427
[2025-11-20 05:45:29] 2025-11-20 13:44:31,378 | INFO     | did not find any defunct processes belonging to 1480427
[2025-11-20 05:45:29] 2025-11-20 13:44:31,385 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 05:45:29] 2025-11-20 13:44:31,386 | INFO     | ready for new job
[2025-11-20 05:45:29] 2025-11-20 13:44:31,386 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 05:45:29] 2025-11-20 13:44:31,407 | INFO     | ***************************************
[2025-11-20 05:45:29] 2025-11-20 13:44:31,407 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 05:45:29] 2025-11-20 13:44:31,407 | INFO     | ***************************************
[2025-11-20 05:45:29] 2025-11-20 13:44:31,407 | INFO     | 
[2025-11-20 05:45:29] 2025-11-20 13:44:31,409 | INFO     | architecture information:
[2025-11-20 05:45:29] 2025-11-20 13:44:31,409 | INFO     | executing command: cat /etc/os-release
[2025-11-20 05:45:29] 2025-11-20 13:44:31,512 | INFO     | cat /etc/os-release:
[2025-11-20 05:45:29] NAME="CentOS Linux"
[2025-11-20 05:45:29] VERSION="7 (Core)"
[2025-11-20 05:45:29] ID="centos"
[2025-11-20 05:45:29] ID_LIKE="rhel fedora"
[2025-11-20 05:45:29] VERSION_ID="7"
[2025-11-20 05:45:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 05:45:29] ANSI_COLOR="0;31"
[2025-11-20 05:45:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 05:45:29] HOME_URL="https://www.centos.org/"
[2025-11-20 05:45:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 05:45:29] 
[2025-11-20 05:45:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 05:45:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 05:45:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 05:45:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 05:45:29] 
[2025-11-20 05:45:29] 2025-11-20 13:44:31,512 | INFO     | ***************************************
[2025-11-20 05:45:29] 2025-11-20 13:44:32,027 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 05:45:29] 2025-11-20 13:44:32,112 | INFO     | sufficient remaining disk space (1176161484800 B)
[2025-11-20 05:45:29] 2025-11-20 13:44:32,112 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 05:45:29] 2025-11-20 13:44:32,112 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 05:45:29] 2025-11-20 13:44:32,112 | INFO     | update_server=False
[2025-11-20 05:45:29] 2025-11-20 13:44:32,113 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 05:45:29] 2025-11-20 13:44:32,113 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 05:45:29] 2025-11-20 13:44:32,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:45:29] 2025-11-20 13:44:32,113 | INFO     | aborting loop
[2025-11-20 05:45:29] 2025-11-20 13:44:32,577 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 05:45:29] 2025-11-20 13:44:33,000 | INFO     | all data control threads have been joined
[2025-11-20 05:45:29] 2025-11-20 13:44:33,118 | INFO     | [job] retrieve thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:33,119 | INFO     | [job] job monitor thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:33,183 | INFO     | [payload] validate_post thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:33,260 | INFO     | all payload control threads have been joined
[2025-11-20 05:45:29] 2025-11-20 13:44:33,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:45:29] 2025-11-20 13:44:33,355 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:33,359 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:33,413 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:33,563 | INFO     | all job control threads have been joined
[2025-11-20 05:45:29] 2025-11-20 13:44:33,598 | INFO     | [data] copytool_in thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:34,005 | INFO     | [data] control thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:34,119 | INFO     | [payload] failed_post thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:34,266 | INFO     | [payload] control thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:34,290 | INFO     | [job] queue monitor thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:34,492 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:34,540 | INFO     | [job] validate thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:34,569 | INFO     | [job] control thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:34,587 | INFO     | [data] copytool_out thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:44:36,125 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 05:45:29] 2025-11-20 13:45:00,518 | INFO     | PID=1459958 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 05:45:29] 2025-11-20 13:45:00,518 | INFO     | .. there are 33 such processes running
[2025-11-20 05:45:29] 2025-11-20 13:45:00,519 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 05:45:29] 2025-11-20 13:45:00,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 05:45:29] 2025-11-20 13:45:00,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 05:45:29] 2025-11-20 13:45:21,755 | INFO     | [monitor] cgroup control has ended
[2025-11-20 05:45:29] 2025-11-20 13:45:23,283 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411278686016)>', '<ExcThread(monitor, started 140410951272192)>']
[2025-11-20 05:45:29] 2025-11-20 13:45:23,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 05:45:29] 2025-11-20 13:45:23,667 | INFO     | [monitor] control thread has ended
[2025-11-20 05:45:29] 2025-11-20 13:45:28,309 | INFO     | all workflow threads have been joined
[2025-11-20 05:45:29] 2025-11-20 13:45:28,309 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 05:45:29] 2025-11-20 13:45:28,310 | INFO     | traces error code: 0
[2025-11-20 05:45:29] 2025-11-20 13:45:28,310 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 05:45:29] 2025-11-20 13:45:28,646 [wrapper] ==== pilot stdout END ====
[2025-11-20 05:45:29] 2025-11-20 13:45:28,674 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 05:45:29] 2025-11-20 13:45:28,722 [wrapper] pilotpid: 1459958
[2025-11-20 05:45:29] 2025-11-20 13:45:28,750 [wrapper] Pilot exit status: 0
[2025-11-20 05:45:29] 2025-11-20 13:45:28,967 [wrapper] pandaids: 6893850786
[2025-11-20 05:45:29] 2025-11-20 13:45:29,232 [wrapper] cleanup supervisor_pilot 1459964 1459959
[2025-11-20 05:45:29] 2025-11-20 13:45:29,270 [wrapper] Test setup, not cleaning
[2025-11-20 05:45:29] 2025-11-20 13:45:29,307 [wrapper] apfmon messages muted
[2025-11-20 05:45:29] 2025-11-20 13:45:29,364 [wrapper] ==== wrapper stdout END ====
[2025-11-20 05:45:29] 2025-11-20 13:45:29,388 [wrapper] ==== wrapper stderr END ====
[2025-11-20 05:45:29]  *** Error codes and diagnostics ***
[2025-11-20 05:45:29]     "exeErrorCode": 65,
[2025-11-20 05:45:29]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 05:45:29]     "pilotErrorCode": 1305,
[2025-11-20 05:45:29]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 05:45:29]  *** Listing of results directory ***
[2025-11-20 05:45:29] total 406872
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc    576529 Nov 20 03:09 pilot3.tar.gz
[2025-11-20 05:45:29] -rwx------. 1 boinc boinc     36292 Nov 20 03:27 runpilot2-wrapper.sh
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc      5112 Nov 20 03:27 queuedata.json
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc       100 Nov 20 05:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 05:45:29] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 05:36 run_atlas
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc       105 Nov 20 05:36 job.xml
[2025-11-20 05:45:29] -rw-r--r--. 2 boinc boinc 412373632 Nov 20 05:36 EVNT.47493127._000342.pool.root.1
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc      6444 Nov 20 05:36 init_data.xml
[2025-11-20 05:45:29] -rw-r--r--. 2 boinc boinc     15847 Nov 20 05:36 start_atlas.sh
[2025-11-20 05:45:29] drwxrwx--x. 2 boinc boinc      4096 Nov 20 05:36 shared
[2025-11-20 05:45:29] -rw-r--r--. 2 boinc boinc    590099 Nov 20 05:36 input.tar.gz
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc         0 Nov 20 05:36 boinc_lockfile
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc      2783 Nov 20 05:36 pandaJob.out
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc    989448 Nov 20 05:37 agis_schedconf.cvmfs.json
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc   1526164 Nov 20 05:37 agis_ddmendpoints.agis.ALL.json
[2025-11-20 05:45:29] drwx------. 5 boinc boinc      4096 Nov 20 05:37 pilot3
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc       524 Nov 20 05:41 boinc_task_state.xml
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc      1011 Nov 20 05:42 memory_monitor_summary.json
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc     51185 Nov 20 05:42 log.47523449._003411.job.log.tgz.1
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc        95 Nov 20 05:44 pilot_heartbeat.json
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc     10335 Nov 20 05:44 heartbeat.json
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc      8192 Nov 20 05:45 boinc_mmap_file
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc        23 Nov 20 05:45 wrapper_checkpoint.txt
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc      4823 Nov 20 05:45 pilotlog.txt
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc    118398 Nov 20 05:45 log.47523449._003411.job.log.1
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc       186 Nov 20 05:45 output.list
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc       620 Nov 20 05:45 runtime_log
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc    194560 Nov 20 05:45 result.tar.gz
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc      8634 Nov 20 05:45 runtime_log.err
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc       645 Nov 20 05:45 IzSMDmszHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdXGKDmrc23Em.diag
[2025-11-20 05:45:29] -rw-r--r--. 1 boinc boinc     22660 Nov 20 05:45 stderr.txt
[2025-11-20 05:45:29] No HITS result produced
[2025-11-20 05:45:29]  *** Contents of shared directory: ***
[2025-11-20 05:45:29] total 403504
[2025-11-20 05:45:29] -rw-r--r--. 2 boinc boinc 412373632 Nov 20 05:36 ATLAS.root_0
[2025-11-20 05:45:29] -rw-r--r--. 2 boinc boinc     15847 Nov 20 05:36 start_atlas.sh
[2025-11-20 05:45:29] -rw-r--r--. 2 boinc boinc    590099 Nov 20 05:36 input.tar.gz
[2025-11-20 05:45:29] -rw-------. 1 boinc boinc    194560 Nov 20 05:45 result.tar.gz
05:45:31 (1456238): run_atlas exited; CPU time 58.276441
05:45:31 (1456238): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN