Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:02:11 (26438): wrapper (7.7.26015): starting
04:02:11 (26438): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 04:02:11] Arguments: --nthreads 8
[2025-11-23 04:02:11] Threads: 8
[2025-11-23 04:02:11] Checking for CVMFS
[2025-11-23 04:02:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 04:02:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 04:02:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 04:02:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 04:02:14] 2.11.2.0 17493 82840 120096 153193 3 118 14160886 25165825 4292 130560 2 23383113 99.868 13841038 1906 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 04:02:14] CVMFS is ok
[2025-11-23 04:02:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 04:02:14] Checking for apptainer binary...
[2025-11-23 04:02:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 04:02:14] Running /usr/bin/apptainer --version
[2025-11-23 04:02:14] apptainer version 1.3.2-1.el7
[2025-11-23 04:02:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 04:02:34] cg-vwn341.simple-grid.lan
[2025-11-23 04:02:34] apptainer works
[2025-11-23 04:02:34] Set ATHENA_PROC_NUMBER=8
[2025-11-23 04:02:34] Set ATHENA_CORE_NUMBER=8
[2025-11-23 04:02:34] Starting ATLAS job with PandaID=6893850451
[2025-11-23 04:02:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:44:56]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:44:56] 2025-11-24 04:44:07,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:44:56] 2025-11-24 04:44:08,835 | INFO     | PID=30254 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 05:44:56] 2025-11-24 04:44:08,836 | INFO     | .. there are 9 such processes running
[2025-11-24 05:44:56] 2025-11-24 04:44:09,839 | INFO     | time since job start (92285s) is within the limit (172800.0s)
[2025-11-24 05:44:56] 2025-11-24 04:44:10,233 | INFO     | monitor loop #6201: job 0:6893850451 is in state 'finished'
[2025-11-24 05:44:56] 2025-11-24 04:44:10,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:44:56] 2025-11-24 04:44:11,849 | INFO     | time since job start (92287s) is within the limit (172800.0s)
[2025-11-24 05:44:56] 2025-11-24 04:44:12,745 | INFO     | monitor loop #6202: job 0:6893850451 is in state 'finished'
[2025-11-24 05:44:56] 2025-11-24 04:44:12,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:44:56] 2025-11-24 04:44:13,856 | INFO     | time since job start (92289s) is within the limit (172800.0s)
[2025-11-24 05:44:56] 2025-11-24 04:44:15,250 | INFO     | monitor loop #6203: job 0:6893850451 is in state 'finished'
[2025-11-24 05:44:56] 2025-11-24 04:44:15,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:44:56] 2025-11-24 04:44:15,868 | INFO     | time since job start (92291s) is within the limit (172800.0s)
[2025-11-24 05:44:56] 2025-11-24 04:44:17,765 | INFO     | monitor loop #6204: job 0:6893850451 is in state 'finished'
[2025-11-24 05:44:56] 2025-11-24 04:44:17,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:44:56] 2025-11-24 04:44:17,875 | INFO     | time since job start (92293s) is within the limit (172800.0s)
[2025-11-24 05:44:56] 2025-11-24 04:44:18,568 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 05:44:56] 2025-11-24 04:44:18,569 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 05:44:56] 2025-11-24 04:44:18,571 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6893850451/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:44:56] 2025-11-24 04:44:18,572 | INFO     | extracted standard info from prmon json
[2025-11-24 05:44:56] 2025-11-24 04:44:18,572 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:44:56] 2025-11-24 04:44:18,572 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:44:56] 2025-11-24 04:44:18,601 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:44:56] 2025-11-24 04:44:18,604 | INFO     | sum of square deviations: 1054924848718.4437
[2025-11-24 05:44:56] 2025-11-24 04:44:18,667 | INFO     | sum of deviations: 3760605127210.7334
[2025-11-24 05:44:56] 2025-11-24 04:44:18,667 | INFO     | mean x: 1763913502.8337767
[2025-11-24 05:44:56] 2025-11-24 04:44:18,667 | INFO     | mean y: 2844840.150930851
[2025-11-24 05:44:56] 2025-11-24 04:44:18,667 | INFO     | intersect: -6285169107.7349205
[2025-11-24 05:44:56] 2025-11-24 04:44:18,669 | INFO     | chi2: 23.616354808385587
[2025-11-24 05:44:56] 2025-11-24 04:44:18,671 | INFO     | sum of square deviations: 1044439198809.5201
[2025-11-24 05:44:56] 2025-11-24 04:44:18,738 | INFO     | sum of deviations: 4246583775531.625
[2025-11-24 05:44:56] 2025-11-24 04:44:18,739 | INFO     | mean x: 1763913350.3382254
[2025-11-24 05:44:56] 2025-11-24 04:44:18,739 | INFO     | mean y: 2851906.7324883253
[2025-11-24 05:44:56] 2025-11-24 04:44:18,739 | INFO     | intersect: -7169040744.872251
[2025-11-24 05:44:56] 2025-11-24 04:44:18,741 | INFO     | chi2: 20.562003076457632
[2025-11-24 05:44:56] 2025-11-24 04:44:18,741 | INFO     | current chi2=20.562003076457632 (change=12.933205639523294 %)
[2025-11-24 05:44:56] 2025-11-24 04:44:18,741 | INFO     | right removable region: 1498
[2025-11-24 05:44:56] 2025-11-24 04:44:18,743 | INFO     | sum of square deviations: 1044437975149.5184
[2025-11-24 05:44:56] 2025-11-24 04:44:18,805 | INFO     | sum of deviations: 3120480939606.6167
[2025-11-24 05:44:56] 2025-11-24 04:44:18,806 | INFO     | mean x: 1763913655.3382254
[2025-11-24 05:44:56] 2025-11-24 04:44:18,806 | INFO     | mean y: 2854148.7798532355
[2025-11-24 05:44:56] 2025-11-24 04:44:18,806 | INFO     | intersect: -5267213649.939161
[2025-11-24 05:44:56] 2025-11-24 04:44:18,808 | INFO     | chi2: 18.761692487475283
[2025-11-24 05:44:56] 2025-11-24 04:44:18,808 | INFO     | current chi2=18.761692487475283 (change=20.55635749165884 %)
[2025-11-24 05:44:56] 2025-11-24 04:44:18,808 | INFO     | left removable region: 10
[2025-11-24 05:44:56] 2025-11-24 04:44:18,810 | INFO     | sum of square deviations: 1021613416517.674
[2025-11-24 05:44:56] 2025-11-24 04:44:18,868 | INFO     | sum of deviations: 3170653451238.346
[2025-11-24 05:44:56] 2025-11-24 04:44:18,869 | INFO     | mean x: 1763913624.8481183
[2025-11-24 05:44:56] 2025-11-24 04:44:18,869 | INFO     | mean y: 2870655.143145161
[2025-11-24 05:44:56] 2025-11-24 04:44:18,869 | INFO     | intersect: -5471566868.7637005
[2025-11-24 05:44:56] 2025-11-24 04:44:18,871 | INFO     | chi2: 11.706050468058551
[2025-11-24 05:44:56] 2025-11-24 04:44:18,871 | INFO     | current memory leak: 3.10 B/s (using 1488 data points, chi2=11.71)
[2025-11-24 05:44:56] 2025-11-24 04:44:18,873 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | ..............................
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | . Timing measurements:
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | . get job = 0 s
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | . initial setup = 12 s
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | . payload setup = 148 s
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | . stage-in = 0 s
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | . payload execution = 91861 s
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | . stage-out = 6 s
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | . log creation = 2 s
[2025-11-24 05:44:56] 2025-11-24 04:44:18,874 | INFO     | ..............................
[2025-11-24 05:44:56] 2025-11-24 04:44:18,997 | INFO     | 
[2025-11-24 05:44:56] 2025-11-24 04:44:18,997 | INFO     | job summary report
[2025-11-24 05:44:56] 2025-11-24 04:44:18,997 | INFO     | --------------------------------------------------
[2025-11-24 05:44:56] 2025-11-24 04:44:18,997 | INFO     | PanDA job id: 6893850451
[2025-11-24 05:44:56] 2025-11-24 04:44:18,997 | INFO     | task id: 47523449
[2025-11-24 05:44:56] 2025-11-24 04:44:18,997 | INFO     | errors: (none)
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | pilot state: finished 
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | transexitcode: 0
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | exeerrorcode: 0
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | exeerrordiag: 
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | exitcode: 0
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | exitmsg: OK
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | cpuconsumptiontime: 338752 s
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | nevents: 1000
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | neventsw: 0
[2025-11-24 05:44:56] 2025-11-24 04:44:18,998 | INFO     | pid: 4483
[2025-11-24 05:44:56] 2025-11-24 04:44:18,999 | INFO     | pgrp: 4483
[2025-11-24 05:44:56] 2025-11-24 04:44:18,999 | INFO     | corecount: 8
[2025-11-24 05:44:56] 2025-11-24 04:44:18,999 | INFO     | event service: False
[2025-11-24 05:44:56] 2025-11-24 04:44:18,999 | INFO     | sizes: {0: 2298581, 1: 2298836, 12: 2298836, 23: 2298864, 34: 2298892, 44: 2298920, 55: 2299076, 66: 2299104, 76: 2299132, 87: 2299478, 98: 2299478, 92011: 2362702
[2025-11-24 05:44:56] 2025-11-24 04:44:18,999 | INFO     | --------------------------------------------------
[2025-11-24 05:44:56] 2025-11-24 04:44:18,999 | INFO     | 
[2025-11-24 05:44:56] 2025-11-24 04:44:18,999 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-24 05:44:56] 2025-11-24 04:44:19,031 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:44:56] 2025-11-24 04:44:19,033 | INFO     | job 6893850451 has completed (purged errors)
[2025-11-24 05:44:56] 2025-11-24 04:44:19,034 | INFO     | overall cleanup function is called
[2025-11-24 05:44:56] 2025-11-24 04:44:20,052 | INFO     | --- collectZombieJob: --- 10, [4483]
[2025-11-24 05:44:56] 2025-11-24 04:44:20,053 | INFO     | zombie collector waiting for pid 4483
[2025-11-24 05:44:56] 2025-11-24 04:44:20,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:44:56] 2025-11-24 04:44:20,053 | INFO     | collected zombie processes
[2025-11-24 05:44:56] 2025-11-24 04:44:20,053 | INFO     | will attempt to kill all subprocesses of pid=4483
[2025-11-24 05:44:56] 2025-11-24 04:44:20,157 | INFO     | process IDs to be killed: [4483] (in reverse order)
[2025-11-24 05:44:56] 2025-11-24 04:44:20,952 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:44:56] 2025-11-24 04:44:20,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:44:56] 2025-11-24 04:44:20,956 | INFO     | did not find any defunct processes belonging to 4483
[2025-11-24 05:44:56] 2025-11-24 04:44:20,963 | INFO     | did not find any defunct processes belonging to 4483
[2025-11-24 05:44:56] 2025-11-24 04:44:21,007 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:44:56] 2025-11-24 04:44:21,007 | INFO     | ready for new job
[2025-11-24 05:44:56] 2025-11-24 04:44:21,007 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:44:56] 2025-11-24 04:44:21,014 | INFO     | ***************************************
[2025-11-24 05:44:56] 2025-11-24 04:44:21,014 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:44:56] 2025-11-24 04:44:21,014 | INFO     | ***************************************
[2025-11-24 05:44:56] 2025-11-24 04:44:21,014 | INFO     | 
[2025-11-24 05:44:56] 2025-11-24 04:44:21,015 | INFO     | pilot is running in a VM
[2025-11-24 05:44:56] 2025-11-24 04:44:21,015 | INFO     | architecture information:
[2025-11-24 05:44:56] 2025-11-24 04:44:21,019 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:44:56] 2025-11-24 04:44:21,179 | INFO     | cat /etc/os-release:
[2025-11-24 05:44:56] NAME="CentOS Linux"
[2025-11-24 05:44:56] VERSION="7 (Core)"
[2025-11-24 05:44:56] ID="centos"
[2025-11-24 05:44:56] ID_LIKE="rhel fedora"
[2025-11-24 05:44:56] VERSION_ID="7"
[2025-11-24 05:44:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:44:56] ANSI_COLOR="0;31"
[2025-11-24 05:44:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:44:56] HOME_URL="https://www.centos.org/"
[2025-11-24 05:44:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:44:56] 
[2025-11-24 05:44:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:44:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:44:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:44:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:44:56] 
[2025-11-24 05:44:56] 2025-11-24 04:44:21,180 | INFO     | ***************************************
[2025-11-24 05:44:56] 2025-11-24 04:44:21,684 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-24 05:44:56] 2025-11-24 04:44:21,903 | INFO     | sufficient remaining disk space (494829305856 B)
[2025-11-24 05:44:56] 2025-11-24 04:44:21,904 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:44:56] 2025-11-24 04:44:21,904 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:44:56] 2025-11-24 04:44:21,904 | INFO     | update_server=False
[2025-11-24 05:44:56] 2025-11-24 04:44:21,904 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:44:56] 2025-11-24 04:44:21,905 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:44:56] 2025-11-24 04:44:21,905 | INFO     | aborting loop
[2025-11-24 05:44:56] 2025-11-24 04:44:21,905 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:44:56] 2025-11-24 04:44:22,081 | INFO     | all data control threads have been joined
[2025-11-24 05:44:56] 2025-11-24 04:44:22,376 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:44:56] 2025-11-24 04:44:22,427 | INFO     | all payload control threads have been joined
[2025-11-24 05:44:56] 2025-11-24 04:44:22,618 | INFO     | all job control threads have been joined
[2025-11-24 05:44:56] 2025-11-24 04:44:22,911 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:22,914 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,026 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,088 | INFO     | [data] control thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,131 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,174 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,376 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,434 | INFO     | [payload] control thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,625 | INFO     | [job] control thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,927 | INFO     | [job] validate thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:23,940 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:24,013 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:44:56] 2025-11-24 04:44:24,020 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:24,147 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:24,384 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:25,020 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:25,916 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:44:56] 2025-11-24 04:44:45,236 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:44:56] 2025-11-24 04:44:46,989 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140140472207168)>', '<ExcThread(monitor, started 140139716130560)>']
[2025-11-24 05:44:56] 2025-11-24 04:44:51,116 | INFO     | PID=30254 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 05:44:56] 2025-11-24 04:44:51,116 | INFO     | .. there are 9 such processes running
[2025-11-24 05:44:56] 2025-11-24 04:44:51,116 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:44:56] 2025-11-24 04:44:51,117 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:44:56] 2025-11-24 04:44:51,117 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:44:56] 2025-11-24 04:44:51,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:44:56] 2025-11-24 04:44:51,117 | INFO     | [monitor] control thread has ended
[2025-11-24 05:44:56] 2025-11-24 04:44:52,014 | INFO     | all workflow threads have been joined
[2025-11-24 05:44:56] 2025-11-24 04:44:52,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:44:56] 2025-11-24 04:44:52,015 | INFO     | traces error code: 0
[2025-11-24 05:44:56] 2025-11-24 04:44:52,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:44:56] 2025-11-24 04:44:52,371 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:44:56] 2025-11-24 04:44:52,422 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:44:56] 2025-11-24 04:44:52,466 [wrapper] pilotpid: 30254
[2025-11-24 05:44:56] 2025-11-24 04:44:52,530 [wrapper] Pilot exit status: 0
[2025-11-24 05:44:56] 2025-11-24 04:44:52,914 [wrapper] pandaids: 6893850451
[2025-11-24 05:44:56] 2025-11-24 04:44:53,888 [wrapper] cleanup supervisor_pilot 29851 30255
[2025-11-24 05:44:56] 2025-11-24 04:44:53,939 [wrapper] Test setup, not cleaning
[2025-11-24 05:44:56] 2025-11-24 04:44:53,990 [wrapper] apfmon messages muted
[2025-11-24 05:44:56] 2025-11-24 04:44:54,048 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:44:56] 2025-11-24 04:44:54,089 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:44:56]  *** Error codes and diagnostics ***
[2025-11-24 05:44:56]     "exeErrorCode": 0,
[2025-11-24 05:44:56]     "exeErrorDiag": "",
[2025-11-24 05:44:56]     "pilotErrorCode": 0,
[2025-11-24 05:44:56]     "pilotErrorDiag": "",
[2025-11-24 05:44:56]  *** Listing of results directory ***
[2025-11-24 05:44:56] total 1333944
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc      5112 Nov 20 12:20 queuedata.json
[2025-11-24 05:44:56] -rwx------. 1 boinc boinc     36292 Nov 20 12:22 runpilot2-wrapper.sh
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc       100 Nov 23 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:44:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 04:02 run_atlas
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc       105 Nov 23 04:02 job.xml
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc      6393 Nov 23 04:02 init_data.xml
[2025-11-24 05:44:56] -rw-r--r--. 2 boinc boinc 408258178 Nov 23 04:02 EVNT.47493127._000336.pool.root.1
[2025-11-24 05:44:56] -rw-r--r--. 2 boinc boinc     15847 Nov 23 04:02 start_atlas.sh
[2025-11-24 05:44:56] drwxrwx--x. 2 boinc boinc        68 Nov 23 04:02 shared
[2025-11-24 05:44:56] -rw-r--r--. 2 boinc boinc    590101 Nov 23 04:02 input.tar.gz
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc         0 Nov 23 04:02 boinc_lockfile
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc      2786 Nov 23 04:02 pandaJob.out
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc    989784 Nov 23 04:05 agis_schedconf.cvmfs.json
[2025-11-24 05:44:56] drwx------. 5 boinc boinc      4096 Nov 23 04:06 pilot3
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc       533 Nov 24 05:21 boinc_task_state.xml
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc 924035017 Nov 24 05:41 HITS.47523449._003355.pool.root.1
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc      1031 Nov 24 05:42 memory_monitor_summary.json
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc   1526164 Nov 24 05:42 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc   2572058 Nov 24 05:42 log.47523449._003355.job.log.tgz.1
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc        95 Nov 24 05:44 pilot_heartbeat.json
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc      7946 Nov 24 05:44 heartbeat.json
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc      8192 Nov 24 05:44 boinc_mmap_file
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc        29 Nov 24 05:44 wrapper_checkpoint.txt
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc      4885 Nov 24 05:44 pilotlog.txt
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc  12304794 Nov 24 05:44 log.47523449._003355.job.log.1
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc       353 Nov 24 05:44 output.list
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc       620 Nov 24 05:44 runtime_log
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc  14899200 Nov 24 05:44 result.tar.gz
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc       662 Nov 24 05:44 ZA3KDmYvHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbWGKDms7p2Mm.diag
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc      8833 Nov 24 05:44 runtime_log.err
[2025-11-24 05:44:56] -rw-r--r--. 1 boinc boinc     21525 Nov 24 05:44 stderr.txt
[2025-11-24 05:44:56] HITS file was successfully produced:
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc 924035017 Nov 24 05:41 shared/HITS.pool.root.1
[2025-11-24 05:44:56]  *** Contents of shared directory: ***
[2025-11-24 05:44:56] total 1316220
[2025-11-24 05:44:56] -rw-r--r--. 2 boinc boinc 408258178 Nov 23 04:02 ATLAS.root_0
[2025-11-24 05:44:56] -rw-r--r--. 2 boinc boinc     15847 Nov 23 04:02 start_atlas.sh
[2025-11-24 05:44:56] -rw-r--r--. 2 boinc boinc    590101 Nov 23 04:02 input.tar.gz
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc 924035017 Nov 24 05:41 HITS.pool.root.1
[2025-11-24 05:44:56] -rw-------. 1 boinc boinc  14899200 Nov 24 05:44 result.tar.gz
05:44:57 (26438): run_atlas exited; CPU time 339254.233744
05:44:57 (26438): called boinc_finish(0)

</stderr_txt>
]]>

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