Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:28:12 (183769): wrapper (7.7.26015): starting
14:28:12 (183769): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 14:28:12] Arguments: --nthreads 3
[2025-11-20 14:28:12] Threads: 3
[2025-11-20 14:28:12] Checking for CVMFS
[2025-11-20 14:28:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 14:28:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 14:28:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 14:28:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 14:28:13] 2.9.2.0 16720 35 56900 153083 1 88 34390241 36864000 0 130560 0 501158 99.996 4141 8249 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 14:28:13] CVMFS is ok
[2025-11-20 14:28:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 14:28:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 14:28:13] Further information can be found at the LHC@home message board.
[2025-11-20 14:28:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 14:28:13] Checking for apptainer binary...
[2025-11-20 14:28:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 14:28:13] Running /usr/bin/apptainer --version
[2025-11-20 14:28:13] apptainer version 1.4.1-1.1
[2025-11-20 14:28:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 14:28:13] thA335
[2025-11-20 14:28:13] apptainer works
[2025-11-20 14:28:13] Set ATHENA_PROC_NUMBER=3
[2025-11-20 14:28:13] Set ATHENA_CORE_NUMBER=3
[2025-11-20 14:28:13] Starting ATLAS job with PandaID=6893836459
[2025-11-20 14:28:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:32:30]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:32:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:32:30] 
[2025-11-20 14:32:30] 2025-11-20 13:31:38,057 | INFO     | ***************************************
[2025-11-20 14:32:30] 2025-11-20 13:31:38,561 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 14:32:30] 2025-11-20 13:31:38,573 | INFO     | sufficient remaining disk space (827667251200 B)
[2025-11-20 14:32:30] 2025-11-20 13:31:38,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:32:30] 2025-11-20 13:31:38,574 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:32:30] 2025-11-20 13:31:38,574 | INFO     | update_server=False
[2025-11-20 14:32:30] 2025-11-20 13:31:38,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:32:30] 2025-11-20 13:31:38,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:32:30] 2025-11-20 13:31:38,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:32:30] 2025-11-20 13:31:38,574 | INFO     | aborting loop
[2025-11-20 14:32:30] 2025-11-20 13:31:39,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:32:30] 2025-11-20 13:31:39,314 | INFO     | all data control threads have been joined
[2025-11-20 14:32:30] 2025-11-20 13:31:39,580 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:39,581 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:39,581 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:39,616 | INFO     | all payload control threads have been joined
[2025-11-20 14:32:30] 2025-11-20 13:31:39,616 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:39,970 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:40,220 | INFO     | all job control threads have been joined
[2025-11-20 14:32:30] 2025-11-20 13:31:40,258 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:40,320 | INFO     | [data] control thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:40,611 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:40,612 | INFO     | [job] validate thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:40,622 | INFO     | [payload] control thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:40,700 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:40,778 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:41,082 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:41,199 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:41,223 | INFO     | [job] control thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:31:41,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:32:30] 2025-11-20 13:31:45,342 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:32:30] 2025-11-20 13:32:08,803 | INFO     | PID=187501 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 14:32:30] 2025-11-20 13:32:08,803 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:32:30] 2025-11-20 13:32:08,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:32:30] 2025-11-20 13:32:08,803 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:32:30] 2025-11-20 13:32:23,980 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:32:30] 2025-11-20 13:32:25,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312689702720)>', '<ExcThread(monitor, started 140312068478720)>']
[2025-11-20 14:32:30] 2025-11-20 13:32:25,893 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:32:30] 2025-11-20 13:32:25,894 | INFO     | [monitor] control thread has ended
[2025-11-20 14:32:30] 2025-11-20 13:32:30,206 | INFO     | all workflow threads have been joined
[2025-11-20 14:32:30] 2025-11-20 13:32:30,206 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:32:30] 2025-11-20 13:32:30,207 | INFO     | traces error code: 0
[2025-11-20 14:32:30] 2025-11-20 13:32:30,207 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:32:30] 2025-11-20 13:32:30,255 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:32:30] 2025-11-20 13:32:30,258 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:32:30] 2025-11-20 13:32:30,261 [wrapper] pilotpid: 187501
[2025-11-20 14:32:30] 2025-11-20 13:32:30,264 [wrapper] Pilot exit status: 0
[2025-11-20 14:32:30] 2025-11-20 13:32:30,271 [wrapper] pandaids: 6893836459
[2025-11-20 14:32:30] 2025-11-20 13:32:30,288 [wrapper] cleanup supervisor_pilot  187507 187502
[2025-11-20 14:32:30] 2025-11-20 13:32:30,290 [wrapper] Test setup, not cleaning
[2025-11-20 14:32:30] 2025-11-20 13:32:30,293 [wrapper] apfmon messages muted
[2025-11-20 14:32:30] 2025-11-20 13:32:30,296 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:32:30] 2025-11-20 13:32:30,298 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:32:30]  *** Error codes and diagnostics ***
[2025-11-20 14:32:30]     "exeErrorCode": 65,
[2025-11-20 14:32:30]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 14:32:30]     "pilotErrorCode": 1305,
[2025-11-20 14:32:30]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 14:32:30]  *** Listing of results directory ***
[2025-11-20 14:32:30] total 403120
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:17 queuedata.json
[2025-11-20 14:32:30] -rwx------ 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc       100 Nov 20 14:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:32:30] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 14:28 run_atlas
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc       105 Nov 20 14:28 job.xml
[2025-11-20 14:32:30] -rw-r--r-- 2 boinc boinc 408588030 Nov 20 14:28 EVNT.47493127._000104.pool.root.1
[2025-11-20 14:32:30] -rw-r--r-- 2 boinc boinc    590103 Nov 20 14:28 input.tar.gz
[2025-11-20 14:32:30] -rw-r--r-- 2 boinc boinc     15847 Nov 20 14:28 start_atlas.sh
[2025-11-20 14:32:30] drwxrwx--x 2 boinc boinc      4096 Nov 20 14:28 shared
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc         0 Nov 20 14:28 boinc_setup_complete
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc      6194 Nov 20 14:28 init_data.xml
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc         0 Nov 20 14:28 boinc_lockfile
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc      2786 Nov 20 14:28 pandaJob.out
[2025-11-20 14:32:30] -rw------- 1 boinc boinc    989448 Nov 20 14:28 agis_schedconf.cvmfs.json
[2025-11-20 14:32:30] -rw------- 1 boinc boinc   1526164 Nov 20 14:28 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:32:30] drwx------ 5 boinc boinc      4096 Nov 20 14:28 pilot3
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc       522 Nov 20 14:29 boinc_task_state.xml
[2025-11-20 14:32:30] -rw------- 1 boinc boinc       947 Nov 20 14:29 memory_monitor_summary.json
[2025-11-20 14:32:30] -rw------- 1 boinc boinc     55876 Nov 20 14:29 log.47523449._001038.job.log.tgz.1
[2025-11-20 14:32:30] -rw------- 1 boinc boinc        95 Nov 20 14:31 pilot_heartbeat.json
[2025-11-20 14:32:30] -rw------- 1 boinc boinc      8399 Nov 20 14:31 heartbeat.json
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc      8192 Nov 20 14:32 boinc_mmap_file
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc        22 Nov 20 14:32 wrapper_checkpoint.txt
[2025-11-20 14:32:30] -rw------- 1 boinc boinc      4751 Nov 20 14:32 pilotlog.txt
[2025-11-20 14:32:30] -rw------- 1 boinc boinc     93305 Nov 20 14:32 log.47523449._001038.job.log.1
[2025-11-20 14:32:30] -rw------- 1 boinc boinc       186 Nov 20 14:32 output.list
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc       620 Nov 20 14:32 runtime_log
[2025-11-20 14:32:30] -rw------- 1 boinc boinc    174080 Nov 20 14:32 result.tar.gz
[2025-11-20 14:32:30] -rw------- 1 boinc boinc       649 Nov 20 14:32 x3ONDm2uGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBIHKDmj2qYKm.diag
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc      8744 Nov 20 14:32 runtime_log.err
[2025-11-20 14:32:30] -rw-r--r-- 1 boinc boinc      8407 Nov 20 14:32 stderr.txt
[2025-11-20 14:32:30] No HITS result produced
[2025-11-20 14:32:30]  *** Contents of shared directory: ***
[2025-11-20 14:32:30] total 399784
[2025-11-20 14:32:30] -rw-r--r-- 2 boinc boinc 408588030 Nov 20 14:28 ATLAS.root_0
[2025-11-20 14:32:30] -rw-r--r-- 2 boinc boinc    590103 Nov 20 14:28 input.tar.gz
[2025-11-20 14:32:30] -rw-r--r-- 2 boinc boinc     15847 Nov 20 14:28 start_atlas.sh
[2025-11-20 14:32:30] -rw------- 1 boinc boinc    174080 Nov 20 14:32 result.tar.gz
14:32:31 (183769): run_atlas exited; CPU time 31.719333
14:32:31 (183769): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN