Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:13:26 (27138): wrapper (7.7.26015): starting
22:13:26 (27138): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 22:13:26] Arguments: --nthreads 8
[2025-11-22 22:13:26] Threads: 8
[2025-11-22 22:13:26] Checking for CVMFS
[2025-11-22 22:13:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:13:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:13:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:13:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:13:28] 2.11.2.0 26010 280008 140760 153185 3 13 20159744 25165824 4585 130560 3 138621942 99.886 74236213 2914 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 22:13:28] CVMFS is ok
[2025-11-22 22:13:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:13:29] Checking for apptainer binary...
[2025-11-22 22:13:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:13:29] Running /usr/bin/apptainer --version
[2025-11-22 22:13:29] apptainer version 1.3.2-1.el7
[2025-11-22 22:13:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:13:52] cg-vwn216.simple-grid.lan
[2025-11-22 22:13:52] apptainer works
[2025-11-22 22:13:52] Set ATHENA_PROC_NUMBER=8
[2025-11-22 22:13:52] Set ATHENA_CORE_NUMBER=8
[2025-11-22 22:13:52] Starting ATLAS job with PandaID=6893834576
[2025-11-22 22:13:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:19:23]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:19:23] 2025-11-23 22:18:36,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:19:23] 2025-11-23 22:18:36,280 | INFO     | PID=30932 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 23:19:23] 2025-11-23 22:18:36,281 | INFO     | .. there are 9 such processes running
[2025-11-23 23:19:23] 2025-11-23 22:18:37,282 | INFO     | time since job start (90077s) is within the limit (172800.0s)
[2025-11-23 23:19:23] 2025-11-23 22:18:38,686 | INFO     | monitor loop #6063: job 0:6893834576 is in state 'finished'
[2025-11-23 23:19:23] 2025-11-23 22:18:38,686 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:19:23] 2025-11-23 22:18:39,295 | INFO     | time since job start (90079s) is within the limit (172800.0s)
[2025-11-23 23:19:23] 2025-11-23 22:18:41,196 | INFO     | monitor loop #6064: job 0:6893834576 is in state 'finished'
[2025-11-23 23:19:23] 2025-11-23 22:18:41,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:19:23] 2025-11-23 22:18:41,309 | INFO     | time since job start (90081s) is within the limit (172800.0s)
[2025-11-23 23:19:23] 2025-11-23 22:18:43,318 | INFO     | time since job start (90083s) is within the limit (172800.0s)
[2025-11-23 23:19:23] 2025-11-23 22:18:43,701 | INFO     | monitor loop #6065: job 0:6893834576 is in state 'finished'
[2025-11-23 23:19:23] 2025-11-23 22:18:43,701 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:19:23] 2025-11-23 22:18:44,530 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 23:19:23] 2025-11-23 22:18:44,531 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 23:19:23] 2025-11-23 22:18:44,533 | INFO     | using path: /var/lib/boinc/slots/13/PanDA_Pilot-6893834576/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 23:19:23] 2025-11-23 22:18:44,534 | INFO     | extracted standard info from prmon json
[2025-11-23 23:19:23] 2025-11-23 22:18:44,534 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 23:19:23] 2025-11-23 22:18:44,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 23:19:23] 2025-11-23 22:18:44,571 | INFO     | fitting pss+swap vs Time
[2025-11-23 23:19:23] 2025-11-23 22:18:44,574 | INFO     | sum of square deviations: 978968958918.116
[2025-11-23 23:19:23] 2025-11-23 22:18:44,641 | INFO     | sum of deviations: 3673716889168.399
[2025-11-23 23:19:23] 2025-11-23 22:18:44,642 | INFO     | mean x: 1763891487.256987
[2025-11-23 23:19:23] 2025-11-23 22:18:44,642 | INFO     | mean y: 2831540.3994546696
[2025-11-23 23:19:23] 2025-11-23 22:18:44,642 | INFO     | intersect: -6616416075.538866
[2025-11-23 23:19:23] 2025-11-23 22:18:44,644 | INFO     | chi2: 25.906595155978618
[2025-11-23 23:19:23] 2025-11-23 22:18:44,646 | INFO     | sum of square deviations: 968993697077.6893
[2025-11-23 23:19:23] 2025-11-23 22:18:44,710 | INFO     | sum of deviations: 4177567750812.576
[2025-11-23 23:19:23] 2025-11-23 22:18:44,710 | INFO     | mean x: 1763891334.761286
[2025-11-23 23:19:23] 2025-11-23 22:18:44,710 | INFO     | mean y: 2839241.752393981
[2025-11-23 23:19:23] 2025-11-23 22:18:44,711 | INFO     | intersect: -7601725760.331108
[2025-11-23 23:19:23] 2025-11-23 22:18:44,712 | INFO     | chi2: 22.47097624580493
[2025-11-23 23:19:23] 2025-11-23 22:18:44,712 | INFO     | current chi2=22.47097624580493 (change=13.261560963486277 %)
[2025-11-23 23:19:23] 2025-11-23 22:18:44,713 | INFO     | right removable region: 1461
[2025-11-23 23:19:23] 2025-11-23 22:18:44,715 | INFO     | sum of square deviations: 968992572237.6885
[2025-11-23 23:19:23] 2025-11-23 22:18:44,794 | INFO     | sum of deviations: 3041810178261.244
[2025-11-23 23:19:23] 2025-11-23 22:18:44,795 | INFO     | mean x: 1763891639.761286
[2025-11-23 23:19:23] 2025-11-23 22:18:44,795 | INFO     | mean y: 2841200.060875513
[2025-11-23 23:19:23] 2025-11-23 22:18:44,795 | INFO     | intersect: -5534274044.058547
[2025-11-23 23:19:23] 2025-11-23 22:18:44,797 | INFO     | chi2: 20.861999777382394
[2025-11-23 23:19:23] 2025-11-23 22:18:44,797 | INFO     | current chi2=20.861999777382394 (change=19.472243836844196 %)
[2025-11-23 23:19:23] 2025-11-23 22:18:44,797 | INFO     | left removable region: 10
[2025-11-23 23:19:23] 2025-11-23 22:18:44,799 | INFO     | sum of square deviations: 947284908388.5565
[2025-11-23 23:19:23] 2025-11-23 22:18:44,879 | INFO     | sum of deviations: 3081412729409.772
[2025-11-23 23:19:23] 2025-11-23 22:18:44,879 | INFO     | mean x: 1763891609.2708478
[2025-11-23 23:19:23] 2025-11-23 22:18:44,879 | INFO     | mean y: 2859042.1481736735
[2025-11-23 23:19:23] 2025-11-23 22:18:44,880 | INFO     | intersect: -5734884703.133621
[2025-11-23 23:19:23] 2025-11-23 22:18:44,881 | INFO     | chi2: 12.948655583033496
[2025-11-23 23:19:23] 2025-11-23 22:18:44,882 | INFO     | current memory leak: 3.25 B/s (using 1451 data points, chi2=12.95)
[2025-11-23 23:19:23] 2025-11-23 22:18:44,884 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-23 23:19:23] 2025-11-23 22:18:44,884 | INFO     | ..............................
[2025-11-23 23:19:23] 2025-11-23 22:18:44,884 | INFO     | . Timing measurements:
[2025-11-23 23:19:23] 2025-11-23 22:18:44,884 | INFO     | . get job = 0 s
[2025-11-23 23:19:23] 2025-11-23 22:18:44,884 | INFO     | . initial setup = 7 s
[2025-11-23 23:19:23] 2025-11-23 22:18:44,885 | INFO     | . payload setup = 170 s
[2025-11-23 23:19:23] 2025-11-23 22:18:44,885 | INFO     | . stage-in = 0 s
[2025-11-23 23:19:23] 2025-11-23 22:18:44,885 | INFO     | . payload execution = 89609 s
[2025-11-23 23:19:23] 2025-11-23 22:18:44,885 | INFO     | . stage-out = 6 s
[2025-11-23 23:19:23] 2025-11-23 22:18:44,885 | INFO     | . log creation = 2 s
[2025-11-23 23:19:23] 2025-11-23 22:18:44,885 | INFO     | ..............................
[2025-11-23 23:19:23] 2025-11-23 22:18:45,021 | INFO     | 
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | job summary report
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | --------------------------------------------------
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | PanDA job id: 6893834576
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | task id: 47523449
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | errors: (none)
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | pilot state: finished 
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | transexitcode: 0
[2025-11-23 23:19:23] 2025-11-23 22:18:45,022 | INFO     | exeerrorcode: 0
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | exeerrordiag: 
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | exitcode: 0
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | exitmsg: OK
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | cpuconsumptiontime: 331105 s
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | nevents: 1000
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | neventsw: 0
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | pid: 5160
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | pgrp: 5160
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | corecount: 8
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | event service: False
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | sizes: {0: 2297975, 1: 2298832, 2: 2298832, 13: 2298860, 23: 2298916, 34: 2298944, 45: 2299100, 56: 2299128, 66: 2299156, 77: 2299184, 88: 2299240, 92: 2299810, 99
[2025-11-23 23:19:23] 2025-11-23 22:18:45,023 | INFO     | --------------------------------------------------
[2025-11-23 23:19:23] 2025-11-23 22:18:45,024 | INFO     | 
[2025-11-23 23:19:23] 2025-11-23 22:18:45,024 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-11-23 23:19:23] 2025-11-23 22:18:45,336 | INFO     | time since job start (90085s) is within the limit (172800.0s)
[2025-11-23 23:19:23] 2025-11-23 22:18:45,594 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,594 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,594 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,595 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,596 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 23:19:23] 2025-11-23 22:18:45,596 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,596 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 23:19:23] 2025-11-23 22:18:45,596 | INFO     | job 6893834576 has completed (purged errors)
[2025-11-23 23:19:23] 2025-11-23 22:18:45,596 | INFO     | overall cleanup function is called
[2025-11-23 23:19:23] 2025-11-23 22:18:46,617 | INFO     | --- collectZombieJob: --- 10, [5160]
[2025-11-23 23:19:23] 2025-11-23 22:18:46,618 | INFO     | zombie collector waiting for pid 5160
[2025-11-23 23:19:23] 2025-11-23 22:18:46,618 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 23:19:23] 2025-11-23 22:18:46,618 | INFO     | collected zombie processes
[2025-11-23 23:19:23] 2025-11-23 22:18:46,618 | INFO     | will attempt to kill all subprocesses of pid=5160
[2025-11-23 23:19:23] 2025-11-23 22:18:46,716 | INFO     | process IDs to be killed: [5160] (in reverse order)
[2025-11-23 23:19:23] 2025-11-23 22:18:47,467 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 23:19:23] 2025-11-23 22:18:47,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 23:19:23] 2025-11-23 22:18:47,471 | INFO     | did not find any defunct processes belonging to 5160
[2025-11-23 23:19:23] 2025-11-23 22:18:47,475 | INFO     | did not find any defunct processes belonging to 5160
[2025-11-23 23:19:23] 2025-11-23 22:18:47,486 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 23:19:23] 2025-11-23 22:18:47,486 | INFO     | ready for new job
[2025-11-23 23:19:23] 2025-11-23 22:18:47,486 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 23:19:23] 2025-11-23 22:18:47,493 | INFO     | ***************************************
[2025-11-23 23:19:23] 2025-11-23 22:18:47,494 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 23:19:23] 2025-11-23 22:18:47,494 | INFO     | ***************************************
[2025-11-23 23:19:23] 2025-11-23 22:18:47,494 | INFO     | 
[2025-11-23 23:19:23] 2025-11-23 22:18:47,494 | INFO     | pilot is running in a VM
[2025-11-23 23:19:23] 2025-11-23 22:18:47,494 | INFO     | architecture information:
[2025-11-23 23:19:23] 2025-11-23 22:18:47,506 | INFO     | executing command: cat /etc/os-release
[2025-11-23 23:19:23] 2025-11-23 22:18:47,689 | INFO     | cat /etc/os-release:
[2025-11-23 23:19:23] NAME="CentOS Linux"
[2025-11-23 23:19:23] VERSION="7 (Core)"
[2025-11-23 23:19:23] ID="centos"
[2025-11-23 23:19:23] ID_LIKE="rhel fedora"
[2025-11-23 23:19:23] VERSION_ID="7"
[2025-11-23 23:19:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 23:19:23] ANSI_COLOR="0;31"
[2025-11-23 23:19:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 23:19:23] HOME_URL="https://www.centos.org/"
[2025-11-23 23:19:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 23:19:23] 
[2025-11-23 23:19:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 23:19:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 23:19:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 23:19:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 23:19:23] 
[2025-11-23 23:19:23] 2025-11-23 22:18:47,690 | INFO     | ***************************************
[2025-11-23 23:19:23] 2025-11-23 22:18:48,194 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-11-23 23:19:23] 2025-11-23 22:18:48,373 | INFO     | sufficient remaining disk space (495128150016 B)
[2025-11-23 23:19:23] 2025-11-23 22:18:48,374 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:19:23] 2025-11-23 22:18:48,374 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:19:23] 2025-11-23 22:18:48,374 | INFO     | update_server=False
[2025-11-23 23:19:23] 2025-11-23 22:18:48,374 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:19:23] 2025-11-23 22:18:48,673 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:19:23] 2025-11-23 22:18:48,719 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 23:19:23] 2025-11-23 22:18:48,720 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 23:19:23] 2025-11-23 22:18:48,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:19:23] 2025-11-23 22:18:48,720 | INFO     | will abort loop
[2025-11-23 23:19:23] 2025-11-23 22:18:48,740 | INFO     | all job control threads have been joined
[2025-11-23 23:19:23] 2025-11-23 22:18:49,093 | INFO     | all payload control threads have been joined
[2025-11-23 23:19:23] 2025-11-23 22:18:49,189 | INFO     | all data control threads have been joined
[2025-11-23 23:19:23] 2025-11-23 22:18:49,381 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:49,513 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:49,727 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:49,746 | INFO     | [job] control thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:49,778 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:49,927 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:49,946 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:49,972 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:50,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:19:23] 2025-11-23 22:18:50,054 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:50,100 | INFO     | [payload] control thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:50,196 | INFO     | [data] control thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:50,487 | INFO     | [job] validate thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:50,551 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:50,680 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:50,748 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:19:23] 2025-11-23 22:18:51,043 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:54,758 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:19:23] 2025-11-23 22:18:57,237 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:19:23] 2025-11-23 22:18:58,463 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140480246753088)>', '<ExcThread(monitor, started 140479521879808)>']
[2025-11-23 23:19:23] 2025-11-23 22:19:03,489 | INFO     | all workflow threads have been joined
[2025-11-23 23:19:23] 2025-11-23 22:19:03,489 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:19:23] 2025-11-23 22:19:03,489 | INFO     | traces error code: 0
[2025-11-23 23:19:23] 2025-11-23 22:19:03,489 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:19:23] 2025-11-23 22:19:18,515 | INFO     | PID=30932 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-23 23:19:23] 2025-11-23 22:19:18,515 | INFO     | .. there are 9 such processes running
[2025-11-23 23:19:23] 2025-11-23 22:19:18,515 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:19:23] 2025-11-23 22:19:18,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:19:23] 2025-11-23 22:19:18,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:19:23] 2025-11-23 22:19:18,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:19:23] 2025-11-23 22:19:18,516 | INFO     | [monitor] control thread has ended
[2025-11-23 23:19:23] 2025-11-23 22:19:18,978 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:19:23] 2025-11-23 22:19:19,049 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:19:23] 2025-11-23 22:19:19,170 [wrapper] pilotpid: 30932
[2025-11-23 23:19:23] 2025-11-23 22:19:19,295 [wrapper] Pilot exit status: 0
[2025-11-23 23:19:23] 2025-11-23 22:19:19,634 [wrapper] pandaids: 6893834576
[2025-11-23 23:19:23] 2025-11-23 22:19:20,355 [wrapper] cleanup supervisor_pilot 14795 30933
[2025-11-23 23:19:23] 2025-11-23 22:19:20,384 [wrapper] Test setup, not cleaning
[2025-11-23 23:19:23] 2025-11-23 22:19:20,445 [wrapper] apfmon messages muted
[2025-11-23 23:19:23] 2025-11-23 22:19:20,499 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:19:23] 2025-11-23 22:19:20,553 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:19:23]  *** Error codes and diagnostics ***
[2025-11-23 23:19:23]     "exeErrorCode": 0,
[2025-11-23 23:19:23]     "exeErrorDiag": "",
[2025-11-23 23:19:23]     "pilotErrorCode": 0,
[2025-11-23 23:19:23]     "pilotErrorDiag": "",
[2025-11-23 23:19:23]  *** Listing of results directory ***
[2025-11-23 23:19:23] total 1323388
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:13 queuedata.json
[2025-11-23 23:19:23] -rwx------. 1 boinc boinc     36292 Nov 20 11:13 runpilot2-wrapper.sh
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc       100 Nov 22 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:19:23] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 22:13 run_atlas
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc       105 Nov 22 22:13 job.xml
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc      6391 Nov 22 22:13 init_data.xml
[2025-11-23 23:19:23] -rw-r--r--. 2 boinc boinc 411288193 Nov 22 22:13 EVNT.47493127._000067.pool.root.1
[2025-11-23 23:19:23] -rw-r--r--. 2 boinc boinc     15847 Nov 22 22:13 start_atlas.sh
[2025-11-23 23:19:23] drwxrwx--x. 2 boinc boinc        68 Nov 22 22:13 shared
[2025-11-23 23:19:23] -rw-r--r--. 2 boinc boinc    590100 Nov 22 22:13 input.tar.gz
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc         0 Nov 22 22:13 boinc_lockfile
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc      2784 Nov 22 22:13 pandaJob.out
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc    989768 Nov 22 22:17 agis_schedconf.cvmfs.json
[2025-11-23 23:19:23] drwx------. 5 boinc boinc      4096 Nov 22 22:17 pilot3
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc       533 Nov 23 22:53 boinc_task_state.xml
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc 910845772 Nov 23 23:15 HITS.47523449._000665.pool.root.1
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc      1031 Nov 23 23:16 memory_monitor_summary.json
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc   1526164 Nov 23 23:17 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc   2546186 Nov 23 23:17 log.47523449._000665.job.log.tgz.1
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc        95 Nov 23 23:18 pilot_heartbeat.json
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc      8643 Nov 23 23:18 heartbeat.json
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc      8192 Nov 23 23:18 boinc_mmap_file
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc        29 Nov 23 23:18 wrapper_checkpoint.txt
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc       820 Nov 23 23:19 pilotlog.txt
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc  12007599 Nov 23 23:19 log.47523449._000665.job.log.1
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc       353 Nov 23 23:19 output.list
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc       620 Nov 23 23:19 runtime_log
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc  14571520 Nov 23 23:19 result.tar.gz
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc      8833 Nov 23 23:19 runtime_log.err
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc       662 Nov 23 23:19 fdjKDmdqGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjDHKDm42t2jm.diag
[2025-11-23 23:19:23] -rw-r--r--. 1 boinc boinc     21485 Nov 23 23:19 stderr.txt
[2025-11-23 23:19:23] HITS file was successfully produced:
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc 910845772 Nov 23 23:15 shared/HITS.pool.root.1
[2025-11-23 23:19:23]  *** Contents of shared directory: ***
[2025-11-23 23:19:23] total 1305980
[2025-11-23 23:19:23] -rw-r--r--. 2 boinc boinc 411288193 Nov 22 22:13 ATLAS.root_0
[2025-11-23 23:19:23] -rw-r--r--. 2 boinc boinc     15847 Nov 22 22:13 start_atlas.sh
[2025-11-23 23:19:23] -rw-r--r--. 2 boinc boinc    590100 Nov 22 22:13 input.tar.gz
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc 910845772 Nov 23 23:15 HITS.pool.root.1
[2025-11-23 23:19:23] -rw-------. 1 boinc boinc  14571520 Nov 23 23:19 result.tar.gz
23:19:25 (27138): run_atlas exited; CPU time 331637.648533
23:19:25 (27138): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN