Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-20 05:02:08 (11784): vboxwrapper version 26210
2025-11-20 05:02:08 (11784): BOINC client version: 8.2.4
2025-11-20 05:02:09 (11784): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2025-11-20 05:02:09 (11784): Successfully copied 'init_data.xml' to the shared directory.
2025-11-20 05:02:10 (11784): Create VM. (boinc_4cabb9553771e032, slot#7)
2025-11-20 05:02:10 (11784): Setting Memory Size for VM. (4200MB)
2025-11-20 05:02:10 (11784): Setting CPU Count for VM. (2)
2025-11-20 05:02:11 (11784): Setting Chipset Options for VM.
2025-11-20 05:02:11 (11784): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-20 05:02:11 (11784): Setting Boot Options for VM.
2025-11-20 05:02:12 (11784): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-20 05:02:12 (11784): Enabling VM Network Access.
2025-11-20 05:02:12 (11784): Disabling USB Support for VM.
2025-11-20 05:02:13 (11784): Disabling COM Port Support for VM.
2025-11-20 05:02:13 (11784): Disabling LPT Port Support for VM.
2025-11-20 05:02:13 (11784): Disabling Audio Support for VM.
2025-11-20 05:02:13 (11784): Disabling Clipboard Support for VM.
2025-11-20 05:02:14 (11784): Disabling Drag and Drop Support for VM.
2025-11-20 05:02:14 (11784): Adding storage controller(s) to VM.
2025-11-20 05:02:14 (11784): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-20 05:02:16 (11784): Adding VirtualBox Guest Additions to VM.
2025-11-20 05:02:16 (11784): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-20 05:02:17 (11784): forwarding host port 9050 to guest port 80
2025-11-20 05:02:17 (11784): Enabling remote desktop for VM.
2025-11-20 05:02:18 (11784): Enabling shared directory for VM.
2025-11-20 05:02:18 (11784): Starting VM using VBoxManage interface. (boinc_4cabb9553771e032, slot#7)
2025-11-20 05:02:24 (11784): Successfully started VM. (PID = '34488')
2025-11-20 05:02:24 (11784): Reporting VM Process ID to BOINC.
2025-11-20 05:02:24 (11784): Guest Log: BIOS: VirtualBox 7.0.14
2025-11-20 05:02:24 (11784): Guest Log: CPUID EDX: 0x178bfbff
2025-11-20 05:02:24 (11784): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-20 05:02:24 (11784): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-20 05:02:24 (11784): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-20 05:02:24 (11784): Detected: Web Application Enabled (http://localhost:9050)
2025-11-20 05:02:24 (11784): Detected: Remote Desktop Enabled (localhost:9052)
2025-11-20 05:02:24 (11784): Preference change detected
2025-11-20 05:02:24 (11784): Setting CPU throttle for VM. (100%)
2025-11-20 05:02:24 (11784): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 90 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-20 05:02:26 (11784): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-20 05:02:26 (11784): Guest Log: BIOS: Booting from Hard Disk...
2025-11-20 05:02:29 (11784): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-20 05:02:29 (11784): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-20 05:02:29 (11784): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-20 05:02:36 (11784): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-20 05:02:36 (11784): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-20 05:02:41 (11784): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-20 05:02:41 (11784): Guest Log: 00:00:00.000112 main     Log opened 2025-11-20T13:02:39.148906000Z
2025-11-20 05:02:41 (11784): Guest Log: 00:00:00.000197 main     OS Product: Linux
2025-11-20 05:02:41 (11784): Guest Log: 00:00:00.000222 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-20 05:02:41 (11784): Guest Log: 00:00:00.000239 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-20 05:02:41 (11784): Guest Log: 00:00:00.000256 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-20 05:02:41 (11784): Guest Log: 00:00:00.000256 main     Process ID: 1265
2025-11-20 05:02:41 (11784): Guest Log: 00:00:00.000257 main     Package type: LINUX_64BITS_GENERIC
2025-11-20 05:02:41 (11784): Guest Log: 00:00:00.001380 main     5.2.32 r132073 started. Verbose level = 0
2025-11-20 05:02:41 (11784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-20 05:02:41 (11784): Guest Log: [INFO] Mounting shared directory
2025-11-20 05:02:41 (11784): Guest Log: [INFO] Checking for init_data.xml
2025-11-20 05:02:46 (11784): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-20 05:02:46 (11784): Guest Log: [INFO] Detected branch: prod
2025-11-20 05:02:46 (11784): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-20 05:02:46 (11784): Guest Log: Copying input files
2025-11-20 05:02:48 (11784): Guest Log: Copied input files into RunAtlas.
2025-11-20 05:02:48 (11784): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-20 05:02:48 (11784): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-20 05:02:48 (11784): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-20 05:02:48 (11784): Guest Log: Further information can be found at the LHC@home message board.
2025-11-20 05:02:57 (11784): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-20 05:02:57 (11784): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-20 05:02:57 (11784): Guest Log: 2.6.3.0 1541 0 32036 153082 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-20 05:02:58 (11784): Guest Log: copied the webapp to /var/www
2025-11-20 05:02:58 (11784): Guest Log: ATHENA_PROC_NUMBER=2
2025-11-20 05:02:58 (11784): Guest Log: ATHENA_CORE_NUMBER=2
2025-11-20 05:02:59 (11784): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-20 05:02:59 (11784): Guest Log:  *** Starting ATLAS job. (PandaID=6891602573 taskID=47493068) ***
2025-11-20 06:42:27 (11784): Status Report: Elapsed Time: '6000.000000'
2025-11-20 06:42:27 (11784): Status Report: CPU Time: '9075.703125'
2025-11-20 08:22:30 (11784): Status Report: Elapsed Time: '12000.000000'
2025-11-20 08:22:30 (11784): Status Report: CPU Time: '20984.609375'
2025-11-20 09:39:40 (11784): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 09:52:52 (11784): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 10:15:47 (11784): Status Report: Elapsed Time: '18000.000000'
2025-11-20 10:15:47 (11784): Status Report: CPU Time: '32934.031250'
2025-11-20 11:55:49 (11784): Status Report: Elapsed Time: '24000.000000'
2025-11-20 11:55:49 (11784): Status Report: CPU Time: '44904.843750'
2025-11-20 13:35:52 (11784): Status Report: Elapsed Time: '30000.000000'
2025-11-20 13:35:52 (11784): Status Report: CPU Time: '56865.921875'
2025-11-20 15:15:55 (11784): Status Report: Elapsed Time: '36000.000000'
2025-11-20 15:15:55 (11784): Status Report: CPU Time: '68826.265625'
2025-11-20 16:55:58 (11784): Status Report: Elapsed Time: '42000.000000'
2025-11-20 16:55:58 (11784): Status Report: CPU Time: '80780.000000'
2025-11-20 17:35:11 (11784): VM state change detected. (old = 'running', new = 'paused')
2025-11-20 17:35:14 (11784): VM state change detected. (old = 'paused', new = 'running')
2025-11-20 18:36:05 (11784): Status Report: Elapsed Time: '48000.000000'
2025-11-20 18:36:05 (11784): Status Report: CPU Time: '92721.343750'
2025-11-20 20:16:08 (11784): Status Report: Elapsed Time: '54000.000000'
2025-11-20 20:16:08 (11784): Status Report: CPU Time: '104666.546875'
2025-11-20 20:45:53 (11784): Guest Log:  *** Job finished ***
2025-11-20 20:45:53 (11784): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:45,142 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:45,143 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:53,164 | INFO     | [monitor] cgroup control has ended
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:53,792 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140696810374976)>', '<ExcThread(monitor, started 140695964718848)>']
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:54,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:54,577 | INFO     | [monitor] control thread has ended
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,797 | INFO     | all workflow threads have been joined
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,797 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,797 | INFO     | traces error code: 0
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,797 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,860 [wrapper] ==== pilot stdout END ====
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,863 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,866 [wrapper] pilotpid: 5968
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,868 [wrapper] Pilot exit status: 0
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,889 [wrapper] pandaids: 6891602573
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,907 [wrapper] cleanup supervisor_pilot 21266 5969
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,911 [wrapper] Test setup, not cleaning
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,915 [wrapper] apfmon messages muted
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,919 [wrapper] ==== wrapper stdout END ====
2025-11-20 20:45:53 (11784): Guest Log: 2025-11-21 04:32:58,922 [wrapper] ==== wrapper stderr END ====
2025-11-20 20:45:53 (11784): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 20:45:53 (11784): Guest Log:     "exeErrorCode": 0,
2025-11-20 20:45:53 (11784): Guest Log:     "exeErrorDiag": "",
2025-11-20 20:45:53 (11784): Guest Log:     "pilotErrorCode": 0,
2025-11-20 20:45:53 (11784): Guest Log:     "pilotErrorDiag": "",
2025-11-20 20:45:53 (11784): Guest Log:  *** Listing of results directory ***
2025-11-20 20:45:53 (11784): Guest Log: total 907988
2025-11-20 20:45:53 (11784): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 19:21 pilot3.tar.gz
2025-11-20 20:45:53 (11784): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 19:28 queuedata.json
2025-11-20 20:45:53 (11784): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 19:29 runpilot2-wrapper.sh
2025-11-20 20:45:53 (11784): Guest Log: -rwxr-xr-x. 1 atlas atlas      8829 Nov 20 13:02 init_data.xml
2025-11-20 20:45:53 (11784): Guest Log: -rwxr-xr-x. 1 atlas atlas    590101 Nov 20 13:02 input.tar.gz
2025-11-20 20:45:53 (11784): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 20 13:02 start_atlas.sh
2025-11-20 20:45:53 (11784): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 20 13:02 EVNT.47493065._000948.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 20:45:53 (11784): Guest Log: -rw-r--r--. 1 atlas atlas      2772 Nov 20 13:02 pandaJob.out
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas    989448 Nov 20 13:08 agis_schedconf.cvmfs.json
2025-11-20 20:45:53 (11784): Guest Log: drwx------. 5 atlas atlas      4096 Nov 20 13:08 pilot3
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas 907900656 Nov 21 04:31 HITS.47493068._007379.pool.root.1
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas      1041 Nov 21 04:31 memory_monitor_summary.json
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 21 04:32 agis_ddmendpoints.agis.ALL.json
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas   1374295 Nov 21 04:32 log.47493068._007379.job.log.tgz.1
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas      8679 Nov 21 04:32 heartbeat.json
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas        95 Nov 21 04:32 pilot_heartbeat.json
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas      4805 Nov 21 04:32 pilotlog.txt
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas   7642404 Nov 21 04:32 log.47493068._007379.job.log.1
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas       353 Nov 21 04:32 output.list
2025-11-20 20:45:53 (11784): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 21 04:32 runtime_log
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas   9031680 Nov 21 04:32 result.tar.gz
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas       658 Nov 21 04:32 uscMDmbZgf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKUGKDmksElUo.diag
2025-11-20 20:45:53 (11784): Guest Log: -rw-r--r--. 1 atlas atlas      8628 Nov 21 04:32 runtime_log.err
2025-11-20 20:45:53 (11784): Guest Log: Looking for outputfile HITS.47493068._007379.pool.root.1
2025-11-20 20:45:53 (11784): Guest Log: HITS file was successfully produced
2025-11-20 20:45:53 (11784): Guest Log: -rw-------. 1 atlas atlas 907900656 Nov 21 04:31 /home/atlas/RunAtlas/HITS.47493068._007379.pool.root.1
2025-11-20 20:45:57 (11784): Guest Log: Successfully finished the ATLAS job!
2025-11-20 20:45:57 (11784): Guest Log: Copying the results back to the shared directory!
2025-11-20 20:45:57 (11784): Guest Log:  *** Contents of shared directory: ***
2025-11-20 20:45:57 (11784): Guest Log: total 1295832
2025-11-20 20:45:57 (11784): Guest Log: -rwxrwxrwx. 1 root root 409373201 Nov 20 13:02 ATLAS.root_0
2025-11-20 20:45:57 (11784): Guest Log: -rwxrwxrwx. 1 root root 907900656 Nov 21  2025 HITS.pool.root.1
2025-11-20 20:45:57 (11784): Guest Log: -rwxrwxrwx. 1 root root      8829 Nov 20 13:02 init_data.xml
2025-11-20 20:45:57 (11784): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 20 12:54 input.tar.gz
2025-11-20 20:45:57 (11784): Guest Log: -rwxrwxrwx. 1 root root   9031680 Nov 21  2025 result.tar.gz
2025-11-20 20:45:57 (11784): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 20 12:54 start_atlas.sh
2025-11-20 20:45:57 (11784): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 20:45:57 (11784): VM Completion File Detected.
2025-11-20 20:45:57 (11784): Powering off VM.
2025-11-20 20:45:58 (11784): Successfully stopped VM.
2025-11-20 20:45:58 (11784): Deregistering VM. (boinc_4cabb9553771e032, slot#7)
2025-11-20 20:45:58 (11784): Removing network bandwidth throttle group from VM.
2025-11-20 20:45:58 (11784): Removing VM from VirtualBox.
2025-11-20 20:46:03 (11784): called boinc_finish(0)

</stderr_txt>
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