Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
13:50:49 (2243987): wrapper (7.7.26015): starting
13:50:49 (2243987): wrapper: running run_atlas (--nthreads 3)
[2025-11-26 13:50:49] Arguments: --nthreads 3
[2025-11-26 13:50:49] Threads: 3
[2025-11-26 13:50:49] Checking for CVMFS
[2025-11-26 13:50:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:50:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:50:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:50:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:50:50] 2.12.7.0 42853 11845 67080 153322 3 81 2627426 4096001 839 130560 31 6611390 99.904 836345 522 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2025-11-26 13:50:50] CVMFS is ok
[2025-11-26 13:50:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:50:50] Checking for apptainer binary...
[2025-11-26 13:50:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:50:50] Running /usr/bin/apptainer --version
[2025-11-26 13:50:50] apptainer version 1.4.2
[2025-11-26 13:50:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:50:50] TS-P320
[2025-11-26 13:50:50] apptainer works
[2025-11-26 13:50:50] Set ATHENA_PROC_NUMBER=3
[2025-11-26 13:50:50] Set ATHENA_CORE_NUMBER=3
[2025-11-26 13:50:50] Starting ATLAS job with PandaID=6893833652
[2025-11-26 13:50:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 03:00:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 03:00:28] 2025-11-27 01:59:54,920 | INFO     | time since job start (47338s) is within the limit (172800.0s)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,799 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 03:00:28] 2025-11-27 01:59:55,801 | INFO     | found 4 cores (4 cores per socket, 1 socket) HT, CPU MHz: 3999.31675
[2025-11-27 03:00:28] 2025-11-27 01:59:55,802 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6893833652/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,802 | INFO     | extracted standard info from prmon json
[2025-11-27 03:00:28] 2025-11-27 01:59:55,802 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 03:00:28] 2025-11-27 01:59:55,802 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 03:00:28] 2025-11-27 01:59:55,811 | INFO     | fitting pss+swap vs Time
[2025-11-27 03:00:28] 2025-11-27 01:59:55,811 | INFO     | sum of square deviations: 144898136263.99872
[2025-11-27 03:00:28] 2025-11-27 01:59:55,821 | INFO     | sum of deviations: 377135416671.7417
[2025-11-27 03:00:28] 2025-11-27 01:59:55,821 | INFO     | mean x: 1764185112.5012887
[2025-11-27 03:00:28] 2025-11-27 01:59:55,821 | INFO     | mean y: 2200758.2577319588
[2025-11-27 03:00:28] 2025-11-27 01:59:55,821 | INFO     | intersect: -4589553867.74408
[2025-11-27 03:00:28] 2025-11-27 01:59:55,822 | INFO     | chi2: 2.400383021207463
[2025-11-27 03:00:28] 2025-11-27 01:59:55,822 | INFO     | sum of square deviations: 142115275088.99747
[2025-11-27 03:00:28] 2025-11-27 01:59:55,832 | INFO     | sum of deviations: 472914074287.1282
[2025-11-27 03:00:28] 2025-11-27 01:59:55,832 | INFO     | mean x: 1764184960.001297
[2025-11-27 03:00:28] 2025-11-27 01:59:55,832 | INFO     | mean y: 2205996.8715953305
[2025-11-27 03:00:28] 2025-11-27 01:59:55,832 | INFO     | intersect: -5868435964.084504
[2025-11-27 03:00:28] 2025-11-27 01:59:55,833 | INFO     | chi2: 1.3900144772926386
[2025-11-27 03:00:28] 2025-11-27 01:59:55,833 | INFO     | current chi2=1.3900144772926386 (change=42.09197178067771 %)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,833 | INFO     | sum of square deviations: 139368275051.49884
[2025-11-27 03:00:28] 2025-11-27 01:59:55,839 | INFO     | sum of deviations: 471906826881.05225
[2025-11-27 03:00:28] 2025-11-27 01:59:55,839 | INFO     | mean x: 1764184807.5013056
[2025-11-27 03:00:28] 2025-11-27 01:59:55,839 | INFO     | mean y: 2205939.447780679
[2025-11-27 03:00:28] 2025-11-27 01:59:55,839 | INFO     | intersect: -5971397839.691104
[2025-11-27 03:00:28] 2025-11-27 01:59:55,839 | INFO     | chi2: 1.378425088909265
[2025-11-27 03:00:28] 2025-11-27 01:59:55,839 | INFO     | current chi2=1.378425088909265 (change=0.8337602645654769 %)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,839 | INFO     | right removable region: 765
[2025-11-27 03:00:28] 2025-11-27 01:59:55,840 | INFO     | sum of square deviations: 142115274478.99747
[2025-11-27 03:00:28] 2025-11-27 01:59:55,846 | INFO     | sum of deviations: 294683400467.7002
[2025-11-27 03:00:28] 2025-11-27 01:59:55,846 | INFO     | mean x: 1764185265.001297
[2025-11-27 03:00:28] 2025-11-27 01:59:55,846 | INFO     | mean y: 2205259.299610895
[2025-11-27 03:00:28] 2025-11-27 01:59:55,846 | INFO     | intersect: -3655924486.7919884
[2025-11-27 03:00:28] 2025-11-27 01:59:55,846 | INFO     | chi2: 1.2028078345865714
[2025-11-27 03:00:28] 2025-11-27 01:59:55,846 | INFO     | current chi2=1.2028078345865714 (change=49.8910038956398 %)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,846 | INFO     | sum of square deviations: 139368273831.49884
[2025-11-27 03:00:28] 2025-11-27 01:59:55,852 | INFO     | sum of deviations: 293518581247.3423
[2025-11-27 03:00:28] 2025-11-27 01:59:55,852 | INFO     | mean x: 1764185417.5013056
[2025-11-27 03:00:28] 2025-11-27 01:59:55,852 | INFO     | mean y: 2205323.6579634463
[2025-11-27 03:00:28] 2025-11-27 01:59:55,852 | INFO     | intersect: -3713283048.0233674
[2025-11-27 03:00:28] 2025-11-27 01:59:55,852 | INFO     | chi2: 1.2005556383892042
[2025-11-27 03:00:28] 2025-11-27 01:59:55,852 | INFO     | current chi2=1.2005556383892042 (change=0.1872448892171779 %)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,852 | INFO     | left removable region: 20
[2025-11-27 03:00:28] 2025-11-27 01:59:55,853 | INFO     | sum of square deviations: 128217227604.9984
[2025-11-27 03:00:28] 2025-11-27 01:59:55,858 | INFO     | sum of deviations: 391243718588.0649
[2025-11-27 03:00:28] 2025-11-27 01:59:55,858 | INFO     | mean x: 1764185387.0013423
[2025-11-27 03:00:28] 2025-11-27 01:59:55,858 | INFO     | mean y: 2210336.9355704696
[2025-11-27 03:00:28] 2025-11-27 01:59:55,858 | INFO     | intersect: -5381047934.843048
[2025-11-27 03:00:28] 2025-11-27 01:59:55,858 | INFO     | chi2: 0.15738226291174948
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | current memory leak: 3.05 B/s (using 745 data points, chi2=0.16)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | could have reported an average CPU frequency of 4001 MHz (30 samples)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | ..............................
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | . Timing measurements:
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | . get job = 0 s
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | . initial setup = 1 s
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | . payload setup = 3 s
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | . stage-in = 0 s
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | . payload execution = 47315 s
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | . stage-out = 1 s
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | . log creation = 0 s
[2025-11-27 03:00:28] 2025-11-27 01:59:55,859 | INFO     | ..............................
[2025-11-27 03:00:28] 2025-11-27 01:59:55,893 | INFO     | 
[2025-11-27 03:00:28] 2025-11-27 01:59:55,893 | INFO     | job summary report
[2025-11-27 03:00:28] 2025-11-27 01:59:55,893 | INFO     | --------------------------------------------------
[2025-11-27 03:00:28] 2025-11-27 01:59:55,893 | INFO     | PanDA job id: 6893833652
[2025-11-27 03:00:28] 2025-11-27 01:59:55,893 | INFO     | task id: 47523449
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | errors: (none)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | pilot state: finished 
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | transexitcode: 0
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | exeerrorcode: 0
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | exeerrordiag: 
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | exitcode: 0
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | exitmsg: OK
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | cpuconsumptiontime: 141235 s
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | nevents: 1000
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | neventsw: 0
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | pid: 2254110
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | pgrp: 2254110
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | corecount: 3
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | event service: False
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | sizes: {0: 2284140, 1: 2284339, 2: 2284601, 11: 2284629, 47322: 2332482, 47324: 2341476, 47325: 2341660, 47327: 2341906}
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | --------------------------------------------------
[2025-11-27 03:00:28] 2025-11-27 01:59:55,894 | INFO     | 
[2025-11-27 03:00:28] 2025-11-27 01:59:55,895 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,906 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | job 6893833652 has completed (purged errors)
[2025-11-27 03:00:28] 2025-11-27 01:59:55,907 | INFO     | overall cleanup function is called
[2025-11-27 03:00:28] 2025-11-27 01:59:55,982 | INFO     | PID=2247689 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:00:28] 2025-11-27 01:59:55,982 | INFO     | .. there are 2 such processes running
[2025-11-27 03:00:28] 2025-11-27 01:59:56,914 | INFO     | --- collectZombieJob: --- 10, [2254110]
[2025-11-27 03:00:28] 2025-11-27 01:59:56,914 | INFO     | zombie collector waiting for pid 2254110
[2025-11-27 03:00:28] 2025-11-27 01:59:56,914 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 03:00:28] 2025-11-27 01:59:56,914 | INFO     | collected zombie processes
[2025-11-27 03:00:28] 2025-11-27 01:59:56,914 | INFO     | will attempt to kill all subprocesses of pid=2254110
[2025-11-27 03:00:28] 2025-11-27 01:59:56,953 | INFO     | process IDs to be killed: [2254110] (in reverse order)
[2025-11-27 03:00:28] 2025-11-27 01:59:56,972 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 03:00:28] 2025-11-27 01:59:56,972 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 03:00:28] 2025-11-27 01:59:56,974 | INFO     | did not find any defunct processes belonging to 2254110
[2025-11-27 03:00:28] 2025-11-27 01:59:56,975 | INFO     | did not find any defunct processes belonging to 2254110
[2025-11-27 03:00:28] 2025-11-27 01:59:56,976 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 03:00:28] 2025-11-27 01:59:56,976 | INFO     | ready for new job
[2025-11-27 03:00:28] 2025-11-27 01:59:56,976 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 03:00:28] 2025-11-27 01:59:56,978 | INFO     | ***************************************
[2025-11-27 03:00:28] 2025-11-27 01:59:56,978 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 03:00:28] 2025-11-27 01:59:56,978 | INFO     | ***************************************
[2025-11-27 03:00:28] 2025-11-27 01:59:56,978 | INFO     | 
[2025-11-27 03:00:28] 2025-11-27 01:59:56,978 | INFO     | architecture information:
[2025-11-27 03:00:28] 2025-11-27 01:59:56,978 | INFO     | executing command: cat /etc/os-release
[2025-11-27 03:00:28] 2025-11-27 01:59:56,984 | INFO     | cat /etc/os-release:
[2025-11-27 03:00:28] NAME="CentOS Linux"
[2025-11-27 03:00:28] VERSION="7 (Core)"
[2025-11-27 03:00:28] ID="centos"
[2025-11-27 03:00:28] ID_LIKE="rhel fedora"
[2025-11-27 03:00:28] VERSION_ID="7"
[2025-11-27 03:00:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 03:00:28] ANSI_COLOR="0;31"
[2025-11-27 03:00:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 03:00:28] HOME_URL="https://www.centos.org/"
[2025-11-27 03:00:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 03:00:28] 
[2025-11-27 03:00:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 03:00:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 03:00:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 03:00:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 03:00:28] 
[2025-11-27 03:00:28] 2025-11-27 01:59:56,985 | INFO     | ***************************************
[2025-11-27 03:00:28] 2025-11-27 01:59:57,486 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-27 03:00:28] 2025-11-27 01:59:57,495 | INFO     | sufficient remaining disk space (191574835200 B)
[2025-11-27 03:00:28] 2025-11-27 01:59:57,495 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 03:00:28] 2025-11-27 01:59:57,495 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 03:00:28] 2025-11-27 01:59:57,495 | INFO     | update_server=False
[2025-11-27 03:00:28] 2025-11-27 01:59:57,495 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 03:00:28] 2025-11-27 01:59:57,495 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:00:28] 2025-11-27 01:59:57,613 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 03:00:28] 2025-11-27 01:59:57,613 | INFO     | aborting loop
[2025-11-27 03:00:28] 2025-11-27 01:59:57,665 | INFO     | all data control threads have been joined
[2025-11-27 03:00:28] 2025-11-27 01:59:58,379 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 03:00:28] 2025-11-27 01:59:58,401 | INFO     | all payload control threads have been joined
[2025-11-27 03:00:28] 2025-11-27 01:59:58,500 | INFO     | [job] retrieve thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:58,500 | INFO     | [job] queue monitor thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:58,602 | INFO     | [data] copytool_in thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:58,618 | INFO     | [job] job monitor thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:58,671 | INFO     | [data] control thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:58,681 | INFO     | [payload] validate_post thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:58,971 | INFO     | all job control threads have been joined
[2025-11-27 03:00:28] 2025-11-27 01:59:59,209 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:59,392 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:59,392 | INFO     | [payload] failed_post thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:59,404 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:59,404 | INFO     | [payload] control thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:59,424 | INFO     | [job] validate thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:59,559 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 03:00:28] 2025-11-27 01:59:59,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 03:00:28] 2025-11-27 01:59:59,973 | INFO     | [job] control thread has finished
[2025-11-27 03:00:28] 2025-11-27 02:00:00,384 | INFO     | [data] copytool_out thread has finished
[2025-11-27 03:00:28] 2025-11-27 02:00:03,755 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 03:00:28] 2025-11-27 02:00:11,931 | INFO     | [monitor] cgroup control has ended
[2025-11-27 03:00:28] 2025-11-27 02:00:12,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140096332085056)>', '<ExcThread(monitor, started 140095826933504)>']
[2025-11-27 03:00:28] 2025-11-27 02:00:17,646 | INFO     | all workflow threads have been joined
[2025-11-27 03:00:28] 2025-11-27 02:00:17,646 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 03:00:28] 2025-11-27 02:00:17,646 | INFO     | traces error code: 0
[2025-11-27 03:00:28] 2025-11-27 02:00:17,646 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 03:00:28] 2025-11-27 02:00:28,109 | INFO     | PID=2247689 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 03:00:28] 2025-11-27 02:00:28,109 | INFO     | .. there are 2 such processes running
[2025-11-27 03:00:28] 2025-11-27 02:00:28,109 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 03:00:28] 2025-11-27 02:00:28,109 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 03:00:28] 2025-11-27 02:00:28,109 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 03:00:28] 2025-11-27 02:00:28,109 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 03:00:28] 2025-11-27 02:00:28,110 | INFO     | [monitor] control thread has ended
[2025-11-27 03:00:28] 2025-11-27 02:00:28,165 [wrapper] ==== pilot stdout END ====
[2025-11-27 03:00:28] 2025-11-27 02:00:28,166 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 03:00:28] 2025-11-27 02:00:28,168 [wrapper] pilotpid: 2247689
[2025-11-27 03:00:28] 2025-11-27 02:00:28,169 [wrapper] Pilot exit status: 0
[2025-11-27 03:00:28] 2025-11-27 02:00:28,173 [wrapper] pandaids: 6893833652
[2025-11-27 03:00:28] 2025-11-27 02:00:28,185 [wrapper] cleanup supervisor_pilot 2412538 2247690
[2025-11-27 03:00:28] 2025-11-27 02:00:28,186 [wrapper] Test setup, not cleaning
[2025-11-27 03:00:28] 2025-11-27 02:00:28,188 [wrapper] apfmon messages muted
[2025-11-27 03:00:28] 2025-11-27 02:00:28,189 [wrapper] ==== wrapper stdout END ====
[2025-11-27 03:00:28] 2025-11-27 02:00:28,190 [wrapper] ==== wrapper stderr END ====
[2025-11-27 03:00:28]  *** Error codes and diagnostics ***
[2025-11-27 03:00:28]     "exeErrorCode": 0,
[2025-11-27 03:00:28]     "exeErrorDiag": "",
[2025-11-27 03:00:28]     "pilotErrorCode": 0,
[2025-11-27 03:00:28]     "pilotErrorDiag": "",
[2025-11-27 03:00:28]  *** Listing of results directory ***
[2025-11-27 03:00:28] insgesamt 1308704
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc    576529 20. Nov 11:06 pilot3.tar.gz
[2025-11-27 03:00:28] -rwx------ 1 boinc boinc     36292 20. Nov 11:11 runpilot2-wrapper.sh
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc      5112 20. Nov 11:12 queuedata.json
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc       100 26. Nov 13:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 03:00:28] -rwxr-xr-x 1 boinc boinc      7986 26. Nov 13:50 run_atlas
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc       105 26. Nov 13:50 job.xml
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc      9829 26. Nov 13:50 init_data.xml
[2025-11-27 03:00:28] -rw-r--r-- 2 boinc boinc 406920117 26. Nov 13:50 EVNT.47493127._000036.pool.root.1
[2025-11-27 03:00:28] drwxrwx--x 2 boinc boinc      4096 26. Nov 13:50 shared
[2025-11-27 03:00:28] -rw-r--r-- 2 boinc boinc    590101 26. Nov 13:50 input.tar.gz
[2025-11-27 03:00:28] -rw-r--r-- 2 boinc boinc     15847 26. Nov 13:50 start_atlas.sh
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc         0 26. Nov 13:50 boinc_lockfile
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc      2784 26. Nov 13:50 pandaJob.out
[2025-11-27 03:00:28] -rw------- 1 boinc boinc        52 26. Nov 13:50 setup.sh.local
[2025-11-27 03:00:28] -rw------- 1 boinc boinc    991830 26. Nov 13:50 agis_schedconf.cvmfs.json
[2025-11-27 03:00:28] drwx------ 5 boinc boinc      4096 26. Nov 13:50 pilot3
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc       532 27. Nov 02:53 boinc_task_state.xml
[2025-11-27 03:00:28] -rw------- 1 boinc boinc 912962636 27. Nov 02:59 HITS.47523449._000354.pool.root.1
[2025-11-27 03:00:28] -rw------- 1 boinc boinc      1023 27. Nov 02:59 memory_monitor_summary.json
[2025-11-27 03:00:28] -rw------- 1 boinc boinc   1516240 27. Nov 02:59 agis_ddmendpoints.agis.ALL.json
[2025-11-27 03:00:28] -rw------- 1 boinc boinc   1398493 27. Nov 02:59 log.47523449._000354.job.log.tgz.1
[2025-11-27 03:00:28] -rw------- 1 boinc boinc      8561 27. Nov 02:59 heartbeat.json
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc        29 27. Nov 02:59 wrapper_checkpoint.txt
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc      8192 27. Nov 02:59 boinc_mmap_file
[2025-11-27 03:00:28] -rw------- 1 boinc boinc       822 27. Nov 03:00 pilotlog.txt
[2025-11-27 03:00:28] -rw------- 1 boinc boinc        95 27. Nov 03:00 pilot_heartbeat.json
[2025-11-27 03:00:28] -rw------- 1 boinc boinc   6754864 27. Nov 03:00 log.47523449._000354.job.log.1
[2025-11-27 03:00:28] -rw------- 1 boinc boinc       353 27. Nov 03:00 output.list
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc       620 27. Nov 03:00 runtime_log
[2025-11-27 03:00:28] -rw------- 1 boinc boinc   8171520 27. Nov 03:00 result.tar.gz
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc      9275 27. Nov 03:00 runtime_log.err
[2025-11-27 03:00:28] -rw------- 1 boinc boinc       651 27. Nov 03:00 PdKNDmmoGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCEGKDmM3ctWn.diag
[2025-11-27 03:00:28] -rw-r--r-- 1 boinc boinc     21062 27. Nov 03:00 stderr.txt
[2025-11-27 03:00:28] HITS file was successfully produced:
[2025-11-27 03:00:28] -rw------- 1 boinc boinc 912962636 27. Nov 02:59 shared/HITS.pool.root.1
[2025-11-27 03:00:28]  *** Contents of shared directory: ***
[2025-11-27 03:00:28] insgesamt 1297536
[2025-11-27 03:00:28] -rw-r--r-- 2 boinc boinc 406920117 26. Nov 13:50 ATLAS.root_0
[2025-11-27 03:00:28] -rw-r--r-- 2 boinc boinc    590101 26. Nov 13:50 input.tar.gz
[2025-11-27 03:00:28] -rw-r--r-- 2 boinc boinc     15847 26. Nov 13:50 start_atlas.sh
[2025-11-27 03:00:28] -rw------- 1 boinc boinc 912962636 27. Nov 02:59 HITS.pool.root.1
[2025-11-27 03:00:28] -rw------- 1 boinc boinc   8171520 27. Nov 03:00 result.tar.gz
03:00:29 (2243987): run_atlas exited; CPU time 141457.948285
03:00:29 (2243987): called boinc_finish(0)

</stderr_txt>
]]>

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