Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:57:28 (37919): wrapper (7.7.26015): starting
13:57:28 (37919): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 13:57:28] Arguments: --nthreads 3
[2025-11-20 13:57:28] Threads: 3
[2025-11-20 13:57:28] Checking for CVMFS
[2025-11-20 13:57:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 13:57:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 13:57:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 13:57:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 13:57:29] 2.9.2.0 16720 4 46872 153082 3 88 34386954 36864001 0 130560 0 62667 99.974 2812 7012 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 13:57:29] CVMFS is ok
[2025-11-20 13:57:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 13:57:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 13:57:29] Further information can be found at the LHC@home message board.
[2025-11-20 13:57:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 13:57:29] Checking for apptainer binary...
[2025-11-20 13:57:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 13:57:29] Running /usr/bin/apptainer --version
[2025-11-20 13:57:29] apptainer version 1.4.1-1.1
[2025-11-20 13:57:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 13:57:29] thA335
[2025-11-20 13:57:29] apptainer works
[2025-11-20 13:57:29] Set ATHENA_PROC_NUMBER=3
[2025-11-20 13:57:29] Set ATHENA_CORE_NUMBER=3
[2025-11-20 13:57:29] Starting ATLAS job with PandaID=6893848597
[2025-11-20 13:57:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:01:47]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:01:47] NAME="CentOS Linux"
[2025-11-20 14:01:47] VERSION="7 (Core)"
[2025-11-20 14:01:47] ID="centos"
[2025-11-20 14:01:47] ID_LIKE="rhel fedora"
[2025-11-20 14:01:47] VERSION_ID="7"
[2025-11-20 14:01:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 14:01:47] ANSI_COLOR="0;31"
[2025-11-20 14:01:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 14:01:47] HOME_URL="https://www.centos.org/"
[2025-11-20 14:01:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 14:01:47] 
[2025-11-20 14:01:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 14:01:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 14:01:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 14:01:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:01:47] 
[2025-11-20 14:01:47] 2025-11-20 13:00:51,328 | INFO     | ***************************************
[2025-11-20 14:01:47] 2025-11-20 13:00:51,832 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 14:01:47] 2025-11-20 13:00:51,845 | INFO     | sufficient remaining disk space (827666202624 B)
[2025-11-20 14:01:47] 2025-11-20 13:00:51,845 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:01:47] 2025-11-20 13:00:51,845 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:01:47] 2025-11-20 13:00:51,845 | INFO     | update_server=False
[2025-11-20 14:01:47] 2025-11-20 13:00:51,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:01:47] 2025-11-20 13:00:51,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:01:47] 2025-11-20 13:00:51,889 | INFO     | all data control threads have been joined
[2025-11-20 14:01:47] 2025-11-20 13:00:52,183 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 14:01:47] 2025-11-20 13:00:52,184 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 14:01:47] 2025-11-20 13:00:52,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:01:47] 2025-11-20 13:00:52,184 | INFO     | will abort loop
[2025-11-20 14:01:47] 2025-11-20 13:00:52,335 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:01:47] 2025-11-20 13:00:52,851 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:52,852 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:52,895 | INFO     | [data] control thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:53,100 | INFO     | all job control threads have been joined
[2025-11-20 14:01:47] 2025-11-20 13:00:53,186 | INFO     | all payload control threads have been joined
[2025-11-20 14:01:47] 2025-11-20 13:00:53,191 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:53,443 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:53,524 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:53,673 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:53,761 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:54,106 | INFO     | [job] control thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:54,183 | INFO     | [job] validate thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:54,192 | INFO     | [payload] control thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:54,233 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:54,259 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:54,306 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:54,342 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:00:54,925 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:01:47] 2025-11-20 13:00:58,933 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:01:47] 2025-11-20 13:01:22,801 | INFO     | PID=41649 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 14:01:47] 2025-11-20 13:01:22,801 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:01:47] 2025-11-20 13:01:22,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:01:47] 2025-11-20 13:01:22,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:01:47] 2025-11-20 13:01:42,001 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:01:47] 2025-11-20 13:01:42,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475942647616)>', '<ExcThread(monitor, started 140475587602176)>']
[2025-11-20 14:01:47] 2025-11-20 13:01:42,908 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:01:47] 2025-11-20 13:01:42,908 | INFO     | [monitor] control thread has ended
[2025-11-20 14:01:47] 2025-11-20 13:01:47,777 | INFO     | all workflow threads have been joined
[2025-11-20 14:01:47] 2025-11-20 13:01:47,777 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:01:47] 2025-11-20 13:01:47,778 | INFO     | traces error code: 0
[2025-11-20 14:01:47] 2025-11-20 13:01:47,778 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:01:47] 2025-11-20 13:01:47,823 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:01:47] 2025-11-20 13:01:47,826 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:01:47] 2025-11-20 13:01:47,829 [wrapper] pilotpid: 41649
[2025-11-20 14:01:47] 2025-11-20 13:01:47,832 [wrapper] Pilot exit status: 0
[2025-11-20 14:01:47] 2025-11-20 13:01:47,840 [wrapper] pandaids: 6893848597
[2025-11-20 14:01:47] 2025-11-20 13:01:47,858 [wrapper] cleanup supervisor_pilot   41655 41650
[2025-11-20 14:01:47] 2025-11-20 13:01:47,861 [wrapper] Test setup, not cleaning
[2025-11-20 14:01:47] 2025-11-20 13:01:47,864 [wrapper] apfmon messages muted
[2025-11-20 14:01:47] 2025-11-20 13:01:47,866 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:01:47] 2025-11-20 13:01:47,869 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:01:47]  *** Error codes and diagnostics ***
[2025-11-20 14:01:47]     "exeErrorCode": 65,
[2025-11-20 14:01:47]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 14:01:47]     "pilotErrorCode": 1305,
[2025-11-20 14:01:47]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-20 14:01:47]  *** Listing of results directory ***
[2025-11-20 14:01:47] total 403752
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-20 14:01:47] -rwx------ 1 boinc boinc     36292 Nov 20 11:47 runpilot2-wrapper.sh
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:48 queuedata.json
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc       100 Nov 20 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:01:47] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 13:57 run_atlas
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc       105 Nov 20 13:57 job.xml
[2025-11-20 14:01:47] -rw-r--r-- 2 boinc boinc 409247115 Nov 20 13:57 EVNT.47493127._000282.pool.root.1
[2025-11-20 14:01:47] -rw-r--r-- 2 boinc boinc    590099 Nov 20 13:57 input.tar.gz
[2025-11-20 14:01:47] -rw-r--r-- 2 boinc boinc     15847 Nov 20 13:57 start_atlas.sh
[2025-11-20 14:01:47] drwxrwx--x 2 boinc boinc      4096 Nov 20 13:57 shared
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc         0 Nov 20 13:57 boinc_setup_complete
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc      6194 Nov 20 13:57 init_data.xml
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc         0 Nov 20 13:57 boinc_lockfile
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc      2786 Nov 20 13:57 pandaJob.out
[2025-11-20 14:01:47] -rw------- 1 boinc boinc    989448 Nov 20 13:57 agis_schedconf.cvmfs.json
[2025-11-20 14:01:47] -rw------- 1 boinc boinc   1525063 Nov 20 13:57 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:01:47] drwx------ 5 boinc boinc      4096 Nov 20 13:57 pilot3
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc       522 Nov 20 13:58 boinc_task_state.xml
[2025-11-20 14:01:47] -rw------- 1 boinc boinc       974 Nov 20 13:58 memory_monitor_summary.json
[2025-11-20 14:01:47] -rw------- 1 boinc boinc     55874 Nov 20 13:58 log.47523449._002813.job.log.tgz.1
[2025-11-20 14:01:47] -rw------- 1 boinc boinc        95 Nov 20 14:00 pilot_heartbeat.json
[2025-11-20 14:01:47] -rw------- 1 boinc boinc      8385 Nov 20 14:00 heartbeat.json
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc      8192 Nov 20 14:01 boinc_mmap_file
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc        22 Nov 20 14:01 wrapper_checkpoint.txt
[2025-11-20 14:01:47] -rw------- 1 boinc boinc      4936 Nov 20 14:01 pilotlog.txt
[2025-11-20 14:01:47] -rw------- 1 boinc boinc     91725 Nov 20 14:01 log.47523449._002813.job.log.1
[2025-11-20 14:01:47] -rw------- 1 boinc boinc       186 Nov 20 14:01 output.list
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc       620 Nov 20 14:01 runtime_log
[2025-11-20 14:01:47] -rw------- 1 boinc boinc    163840 Nov 20 14:01 result.tar.gz
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc      8744 Nov 20 14:01 runtime_log.err
[2025-11-20 14:01:47] -rw------- 1 boinc boinc       649 Nov 20 14:01 A6MLDmkNHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqXHKDm1Go1mm.diag
[2025-11-20 14:01:47] -rw-r--r-- 1 boinc boinc      9296 Nov 20 14:01 stderr.txt
[2025-11-20 14:01:47] No HITS result produced
[2025-11-20 14:01:47]  *** Contents of shared directory: ***
[2025-11-20 14:01:47] total 400416
[2025-11-20 14:01:47] -rw-r--r-- 2 boinc boinc 409247115 Nov 20 13:57 ATLAS.root_0
[2025-11-20 14:01:47] -rw-r--r-- 2 boinc boinc    590099 Nov 20 13:57 input.tar.gz
[2025-11-20 14:01:47] -rw-r--r-- 2 boinc boinc     15847 Nov 20 13:57 start_atlas.sh
[2025-11-20 14:01:47] -rw------- 1 boinc boinc    163840 Nov 20 14:01 result.tar.gz
14:01:48 (37919): run_atlas exited; CPU time 30.734912
14:01:48 (37919): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN