Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:22:23 (1272021): wrapper (7.7.26015): starting
05:22:23 (1272021): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 05:22:23] Arguments: --nthreads 12
[2025-11-20 05:22:23] Threads: 12
[2025-11-20 05:22:23] Checking for CVMFS
[2025-11-20 05:22:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:22:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:22:24] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:22:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:22:24] 2.11.5.0 394429 19481 231084 153083 3 161 28654248 45568001 13802 130560 0 170318657 99.755 121213740 21869 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 05:22:24] CVMFS is ok
[2025-11-20 05:22:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:22:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:22:24] Further information can be found at the LHC@home message board.
[2025-11-20 05:22:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:22:24] Checking for apptainer binary...
[2025-11-20 05:22:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:22:24] Running /usr/bin/apptainer --version
[2025-11-20 05:22:24] apptainer version 1.4.1-1.el9
[2025-11-20 05:22:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:22:25] wns0074.triumf.lcg
[2025-11-20 05:22:25] apptainer works
[2025-11-20 05:22:25] Set ATHENA_PROC_NUMBER=12
[2025-11-20 05:22:25] Set ATHENA_CORE_NUMBER=12
[2025-11-20 05:22:25] Starting ATLAS job with PandaID=6893848594
[2025-11-20 05:22:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 05:27:48]  *** The last 200 lines of the pilot log: ***
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | ..............................
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . Timing measurements:
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . get job = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . initial setup = 3 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . payload setup = 11 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . stage-in = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . payload execution = 98 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . stage-out = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . log creation = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | ..............................
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893848594/pilotlog.txt
[2025-11-20 05:27:48] 2025-11-20 13:27:04,927 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 05:27:48] - Log from pilotlog.txt -
[2025-11-20 05:27:48] 2025-11-20 13:27:04,891 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893848594/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:27:48] 2025-11-20 13:27:04,892 | INFO     | extracted standard info from prmon json
[2025-11-20 05:27:48] 2025-11-20 13:27:04,892 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:27:48] 2025-11-20 13:27:04,892 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:27:48] 2025-11-20 13:27:04,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 05:27:48] 2025-11-20 13:27:04,893 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 05:27:48] 2025-11-20 13:27:04,894 | WARNING  | wrong length of table data, x=[1763645003.0, 1763645064.0], y=[1593.0, 382629.0] (must be same and length>=4)
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | could have reported an average CPU frequency of 1270 MHz (4 samples)
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | ..............................
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . Timing measurements:
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . get job = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . initial setup = 3 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . payload setup = 11 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . stage-in = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . payload execution = 98 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . stage-out = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . log creation = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | ..............................
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893848594/pilotlog.txt
[2025-11-20 05:27:48] 2025-11-20 13:27:04,928 | WARNING  | 
[2025-11-20 05:27:48] [begin log extracts]
[2025-11-20 05:27:48] - Log from pilotlog.txt -
[2025-11-20 05:27:48] 2025-11-20 13:27:04,891 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893848594/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:27:48] 2025-11-20 13:27:04,892 | INFO     | extracted standard info from prmon json
[2025-11-20 05:27:48] 2025-11-20 13:27:04,892 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:27:48] 2025-11-20 13:27:04,892 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:27:48] 2025-11-20 13:27:04,893 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 05:27:48] 2025-11-20 13:27:04,893 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 05:27:48] 2025-11-20 13:27:04,894 | WARNING  | wrong length of table data, x=[1763645003.0, 1763645064.0], y=[1593.0, 382629.0] (must be same and length>=4)
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | could have reported an average CPU frequency of 1270 MHz (4 samples)
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | ..............................
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . Timing measurements:
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . get job = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . initial setup = 3 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . payload setup = 11 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,896 | INFO     | . stage-in = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . payload execution = 98 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . stage-out = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | . log creation = 0 s
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | ..............................
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 05:27:48] 2025-11-20 13:27:04,897 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893848594/pilotlog.txt
[2025-11-20 05:27:48] [end log extracts]
[2025-11-20 05:27:48] 2025-11-20 13:27:04,928 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 05:27:48] 2025-11-20 13:27:04,929 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 05:27:48] 2025-11-20 13:27:05,085 | INFO     | time since job start (264s) is within the limit (172800.0s)
[2025-11-20 05:27:48] 2025-11-20 13:27:05,124 | INFO     | 
[2025-11-20 05:27:48] 2025-11-20 13:27:05,124 | INFO     | job summary report
[2025-11-20 05:27:48] 2025-11-20 13:27:05,124 | INFO     | --------------------------------------------------
[2025-11-20 05:27:48] 2025-11-20 13:27:05,124 | INFO     | PanDA job id: 6893848594
[2025-11-20 05:27:48] 2025-11-20 13:27:05,124 | INFO     | task id: 47523449
[2025-11-20 05:27:48] 2025-11-20 13:27:05,124 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 05:24:47,799 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 05:27:48] 2025-11-20 13:27:05,125 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 05:27:48] 2025-11-20 13:27:05,125 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 05:27:48] 2025-11-20 13:27:05,125 | INFO     | pilot state: failed 
[2025-11-20 05:27:48] 2025-11-20 13:27:05,125 | INFO     | transexitcode: 65
[2025-11-20 05:27:48] 2025-11-20 13:27:05,125 | INFO     | exeerrorcode: 65
[2025-11-20 05:27:48] 2025-11-20 13:27:05,125 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 05:27:48] 2025-11-20 13:27:05,125 | INFO     | exitcode: 65
[2025-11-20 05:27:48] 2025-11-20 13:27:05,125 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | cpuconsumptiontime: 77 s
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | nevents: 0
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | neventsw: 0
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | pid: 1282297
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | pgrp: 1282297
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | corecount: 12
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | event service: False
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | sizes: {0: 2298804, 1: 2298804, 10: 2299094, 12: 2299122, 113: 2324547, 114: 2328837, 117: 2328993, 243: 2329159}
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | --------------------------------------------------
[2025-11-20 05:27:48] 2025-11-20 13:27:05,126 | INFO     | 
[2025-11-20 05:27:48] 2025-11-20 13:27:05,127 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 05:27:48] 2025-11-20 13:27:05,149 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,149 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,149 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,149 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,150 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,151 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,151 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,151 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,151 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 05:27:48] 2025-11-20 13:27:05,151 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,151 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 05:27:48] 2025-11-20 13:27:05,151 | INFO     | job 6893848594 has completed (purged errors)
[2025-11-20 05:27:48] 2025-11-20 13:27:05,152 | INFO     | overall cleanup function is called
[2025-11-20 05:27:48] 2025-11-20 13:27:06,164 | INFO     | --- collectZombieJob: --- 10, [1282297]
[2025-11-20 05:27:48] 2025-11-20 13:27:06,164 | INFO     | zombie collector waiting for pid 1282297
[2025-11-20 05:27:48] 2025-11-20 13:27:06,164 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 05:27:48] 2025-11-20 13:27:06,164 | INFO     | collected zombie processes
[2025-11-20 05:27:48] 2025-11-20 13:27:06,164 | INFO     | will attempt to kill all subprocesses of pid=1282297
[2025-11-20 05:27:48] 2025-11-20 13:27:06,534 | INFO     | process IDs to be killed: [1282297] (in reverse order)
[2025-11-20 05:27:48] 2025-11-20 13:27:06,657 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 05:27:48] 2025-11-20 13:27:06,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 05:27:48] 2025-11-20 13:27:06,669 | INFO     | did not find any defunct processes belonging to 1282297
[2025-11-20 05:27:48] 2025-11-20 13:27:06,681 | INFO     | did not find any defunct processes belonging to 1282297
[2025-11-20 05:27:48] 2025-11-20 13:27:06,683 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 05:27:48] 2025-11-20 13:27:06,683 | INFO     | ready for new job
[2025-11-20 05:27:48] 2025-11-20 13:27:06,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 05:27:48] 2025-11-20 13:27:06,685 | INFO     | ***************************************
[2025-11-20 05:27:48] 2025-11-20 13:27:06,685 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 05:27:48] 2025-11-20 13:27:06,685 | INFO     | ***************************************
[2025-11-20 05:27:48] 2025-11-20 13:27:06,686 | INFO     | 
[2025-11-20 05:27:48] 2025-11-20 13:27:06,689 | INFO     | architecture information:
[2025-11-20 05:27:48] 2025-11-20 13:27:06,690 | INFO     | executing command: cat /etc/os-release
[2025-11-20 05:27:48] 2025-11-20 13:27:06,709 | INFO     | cat /etc/os-release:
[2025-11-20 05:27:48] NAME="CentOS Linux"
[2025-11-20 05:27:48] VERSION="7 (Core)"
[2025-11-20 05:27:48] ID="centos"
[2025-11-20 05:27:48] ID_LIKE="rhel fedora"
[2025-11-20 05:27:48] VERSION_ID="7"
[2025-11-20 05:27:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 05:27:48] ANSI_COLOR="0;31"
[2025-11-20 05:27:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 05:27:48] HOME_URL="https://www.centos.org/"
[2025-11-20 05:27:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 05:27:48] 
[2025-11-20 05:27:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 05:27:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 05:27:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 05:27:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 05:27:48] 
[2025-11-20 05:27:48] 2025-11-20 13:27:06,709 | INFO     | ***************************************
[2025-11-20 05:27:48] 2025-11-20 13:27:07,212 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 05:27:48] 2025-11-20 13:27:07,235 | INFO     | sufficient remaining disk space (1939594018816 B)
[2025-11-20 05:27:48] 2025-11-20 13:27:07,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 05:27:48] 2025-11-20 13:27:07,236 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 05:27:48] 2025-11-20 13:27:07,236 | INFO     | update_server=False
[2025-11-20 05:27:48] 2025-11-20 13:27:07,236 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 05:27:48] 2025-11-20 13:27:07,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 05:27:48] 2025-11-20 13:27:07,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 05:27:48] 2025-11-20 13:27:07,291 | INFO     | all data control threads have been joined
[2025-11-20 05:27:48] 2025-11-20 13:27:07,478 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 05:27:48] 2025-11-20 13:27:07,480 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 05:27:48] 2025-11-20 13:27:07,480 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:27:48] 2025-11-20 13:27:07,480 | INFO     | will abort loop
[2025-11-20 05:27:48] 2025-11-20 13:27:07,593 | INFO     | all payload control threads have been joined
[2025-11-20 05:27:48] 2025-11-20 13:27:08,242 | INFO     | [job] retrieve thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:08,296 | INFO     | [data] control thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:08,364 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:08,373 | INFO     | [payload] validate_post thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:08,410 | INFO     | [data] copytool_in thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:08,486 | INFO     | [job] job monitor thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:08,551 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:08,598 | INFO     | [payload] control thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:08,868 | INFO     | all job control threads have been joined
[2025-11-20 05:27:48] 2025-11-20 13:27:09,180 | INFO     | [payload] failed_post thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:09,228 | INFO     | [job] validate thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:09,244 | INFO     | [data] copytool_out thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:09,654 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:09,698 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:09,874 | INFO     | [job] control thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:10,090 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:27:48] 2025-11-20 13:27:11,095 | INFO     | [job] queue monitor thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:11,253 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 05:27:48] 2025-11-20 13:27:38,594 | INFO     | PID=1275693 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 05:27:48] 2025-11-20 13:27:38,595 | INFO     | .. there are 27 such processes running
[2025-11-20 05:27:48] 2025-11-20 13:27:38,595 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 05:27:48] 2025-11-20 13:27:38,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 05:27:48] 2025-11-20 13:27:38,596 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 05:27:48] 2025-11-20 13:27:41,426 | INFO     | [monitor] cgroup control has ended
[2025-11-20 05:27:48] 2025-11-20 13:27:42,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140451576350528)>', '<ExcThread(monitor, started 140451042543360)>']
[2025-11-20 05:27:48] 2025-11-20 13:27:42,615 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 05:27:48] 2025-11-20 13:27:42,616 | INFO     | [monitor] control thread has ended
[2025-11-20 05:27:48] 2025-11-20 13:27:47,459 | INFO     | all workflow threads have been joined
[2025-11-20 05:27:48] 2025-11-20 13:27:47,460 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 05:27:48] 2025-11-20 13:27:47,460 | INFO     | traces error code: 0
[2025-11-20 05:27:48] 2025-11-20 13:27:47,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 05:27:48] 2025-11-20 13:27:47,676 [wrapper] ==== pilot stdout END ====
[2025-11-20 05:27:48] 2025-11-20 13:27:47,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 05:27:48] 2025-11-20 13:27:47,684 [wrapper] pilotpid: 1275693
[2025-11-20 05:27:48] 2025-11-20 13:27:47,688 [wrapper] Pilot exit status: 0
[2025-11-20 05:27:48] 2025-11-20 13:27:47,711 [wrapper] pandaids: 6893848594
[2025-11-20 05:27:48] 2025-11-20 13:27:47,825 [wrapper] cleanup supervisor_pilot 1275699 1275694
[2025-11-20 05:27:48] 2025-11-20 13:27:47,833 [wrapper] Test setup, not cleaning
[2025-11-20 05:27:48] 2025-11-20 13:27:47,837 [wrapper] apfmon messages muted
[2025-11-20 05:27:48] 2025-11-20 13:27:47,842 [wrapper] ==== wrapper stdout END ====
[2025-11-20 05:27:48] 2025-11-20 13:27:47,845 [wrapper] ==== wrapper stderr END ====
[2025-11-20 05:27:48]  *** Error codes and diagnostics ***
[2025-11-20 05:27:48]     "exeErrorCode": 65,
[2025-11-20 05:27:48]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 05:27:48]     "pilotErrorCode": 1305,
[2025-11-20 05:27:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 05:27:48]  *** Listing of results directory ***
[2025-11-20 05:27:48] total 403564
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc    576529 Nov 20 02:06 pilot3.tar.gz
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc      5112 Nov 20 02:44 queuedata.json
[2025-11-20 05:27:48] -rwx------. 1 boinc boinc     36292 Nov 20 02:44 runpilot2-wrapper.sh
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc       100 Nov 20 05:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 05:27:48] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 05:22 run_atlas
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc       105 Nov 20 05:22 job.xml
[2025-11-20 05:27:48] -rw-r--r--. 2 boinc boinc 409024911 Nov 20 05:22 EVNT.47493127._000281.pool.root.1
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc      6594 Nov 20 05:22 init_data.xml
[2025-11-20 05:27:48] -rw-r--r--. 2 boinc boinc     15847 Nov 20 05:22 start_atlas.sh
[2025-11-20 05:27:48] drwxrwx--x. 2 boinc boinc      4096 Nov 20 05:22 shared
[2025-11-20 05:27:48] -rw-r--r--. 2 boinc boinc    590099 Nov 20 05:22 input.tar.gz
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc         0 Nov 20 05:22 boinc_lockfile
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc      2786 Nov 20 05:22 pandaJob.out
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc    989448 Nov 20 05:22 agis_schedconf.cvmfs.json
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc   1526164 Nov 20 05:22 agis_ddmendpoints.agis.ALL.json
[2025-11-20 05:27:48] drwx------. 5 boinc boinc      4096 Nov 20 05:22 pilot3
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc       525 Nov 20 05:24 boinc_task_state.xml
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc      1012 Nov 20 05:24 memory_monitor_summary.json
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc     49423 Nov 20 05:24 log.47523449._002810.job.log.tgz.1
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc        95 Nov 20 05:26 pilot_heartbeat.json
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc     10341 Nov 20 05:27 heartbeat.json
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc        23 Nov 20 05:27 wrapper_checkpoint.txt
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc      5009 Nov 20 05:27 pilotlog.txt
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc      8192 Nov 20 05:27 boinc_mmap_file
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc     99734 Nov 20 05:27 log.47523449._002810.job.log.1
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc       186 Nov 20 05:27 output.list
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc       620 Nov 20 05:27 runtime_log
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc    174080 Nov 20 05:27 result.tar.gz
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc      8636 Nov 20 05:27 runtime_log.err
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc       645 Nov 20 05:27 0uxKDmmKHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTXHKDmh9oROm.diag
[2025-11-20 05:27:48] -rw-r--r--. 1 boinc boinc     22435 Nov 20 05:27 stderr.txt
[2025-11-20 05:27:48] No HITS result produced
[2025-11-20 05:27:48]  *** Contents of shared directory: ***
[2025-11-20 05:27:48] total 400212
[2025-11-20 05:27:48] -rw-r--r--. 2 boinc boinc 409024911 Nov 20 05:22 ATLAS.root_0
[2025-11-20 05:27:48] -rw-r--r--. 2 boinc boinc     15847 Nov 20 05:22 start_atlas.sh
[2025-11-20 05:27:48] -rw-r--r--. 2 boinc boinc    590099 Nov 20 05:22 input.tar.gz
[2025-11-20 05:27:48] -rw-------. 1 boinc boinc    174080 Nov 20 05:27 result.tar.gz
05:27:49 (1272021): run_atlas exited; CPU time 73.857938
05:27:49 (1272021): called boinc_finish(0)

</stderr_txt>
]]>

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