Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:00:53 (3002728): wrapper (7.7.26015): starting
09:00:53 (3002728): wrapper: running run_atlas (--nthreads 4)
[2025-11-23 09:00:53] Arguments: --nthreads 4
[2025-11-23 09:00:53] Threads: 4
[2025-11-23 09:00:53] Checking for CVMFS
[2025-11-23 09:00:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 09:00:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 09:00:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 09:00:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 09:00:53] 2.9.2.0 1949900 7437 93236 153201 2 81 20561325 36864000 0 130560 0 2939524 99.916 420978 4722 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-23 09:00:53] CVMFS is ok
[2025-11-23 09:00:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-23 09:00:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-23 09:00:53] Further information can be found at the LHC@home message board.
[2025-11-23 09:00:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 09:00:53] Checking for apptainer binary...
[2025-11-23 09:00:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 09:00:53] Running /usr/bin/apptainer --version
[2025-11-23 09:00:53] apptainer version 1.4.1-1.1
[2025-11-23 09:00:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 09:00:53] magicA250
[2025-11-23 09:00:53] apptainer works
[2025-11-23 09:00:53] Set ATHENA_PROC_NUMBER=4
[2025-11-23 09:00:53] Set ATHENA_CORE_NUMBER=4
[2025-11-23 09:00:53] Starting ATLAS job with PandaID=6893847173
[2025-11-23 09:00:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 15:50:41]  *** The last 200 lines of the pilot log: ***
[2025-11-23 15:50:41] 2025-11-23 14:50:09,895 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 15:50:41] 2025-11-23 14:50:09,895 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 15:50:41] 2025-11-23 14:50:09,895 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 15:50:41] 2025-11-23 14:50:09,895 | INFO     | job 6893847173 has completed (purged errors)
[2025-11-23 15:50:41] 2025-11-23 14:50:09,895 | INFO     | overall cleanup function is called
[2025-11-23 15:50:41] 2025-11-23 14:50:10,904 | INFO     | --- collectZombieJob: --- 10, [3013109]
[2025-11-23 15:50:41] 2025-11-23 14:50:10,905 | INFO     | zombie collector waiting for pid 3013109
[2025-11-23 15:50:41] 2025-11-23 14:50:10,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 15:50:41] 2025-11-23 14:50:10,905 | INFO     | collected zombie processes
[2025-11-23 15:50:41] 2025-11-23 14:50:10,905 | INFO     | will attempt to kill all subprocesses of pid=3013109
[2025-11-23 15:50:41] 2025-11-23 14:50:10,948 | INFO     | process IDs to be killed: [3013109] (in reverse order)
[2025-11-23 15:50:41] 2025-11-23 14:50:10,982 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 15:50:41] 2025-11-23 14:50:10,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 15:50:41] 2025-11-23 14:50:10,984 | INFO     | did not find any defunct processes belonging to 3013109
[2025-11-23 15:50:41] 2025-11-23 14:50:10,985 | INFO     | did not find any defunct processes belonging to 3013109
[2025-11-23 15:50:41] 2025-11-23 14:50:10,986 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 15:50:41] 2025-11-23 14:50:10,986 | INFO     | ready for new job
[2025-11-23 15:50:41] 2025-11-23 14:50:10,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 15:50:41] 2025-11-23 14:50:10,987 | INFO     | ***************************************
[2025-11-23 15:50:41] 2025-11-23 14:50:10,987 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 15:50:41] 2025-11-23 14:50:10,987 | INFO     | ***************************************
[2025-11-23 15:50:41] 2025-11-23 14:50:10,987 | INFO     | 
[2025-11-23 15:50:41] 2025-11-23 14:50:10,988 | INFO     | architecture information:
[2025-11-23 15:50:41] 2025-11-23 14:50:10,988 | INFO     | executing command: cat /etc/os-release
[2025-11-23 15:50:41] 2025-11-23 14:50:11,003 | INFO     | cat /etc/os-release:
[2025-11-23 15:50:41] NAME="CentOS Linux"
[2025-11-23 15:50:41] VERSION="7 (Core)"
[2025-11-23 15:50:41] ID="centos"
[2025-11-23 15:50:41] ID_LIKE="rhel fedora"
[2025-11-23 15:50:41] VERSION_ID="7"
[2025-11-23 15:50:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 15:50:41] ANSI_COLOR="0;31"
[2025-11-23 15:50:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 15:50:41] HOME_URL="https://www.centos.org/"
[2025-11-23 15:50:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 15:50:41] 
[2025-11-23 15:50:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 15:50:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 15:50:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 15:50:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 15:50:41] 
[2025-11-23 15:50:41] 2025-11-23 14:50:11,003 | INFO     | ***************************************
[2025-11-23 15:50:41] 2025-11-23 14:50:11,506 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 15:50:41] 2025-11-23 14:50:11,523 | INFO     | sufficient remaining disk space (335979479040 B)
[2025-11-23 15:50:41] 2025-11-23 14:50:11,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 15:50:41] 2025-11-23 14:50:11,523 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 15:50:41] 2025-11-23 14:50:11,523 | INFO     | update_server=False
[2025-11-23 15:50:41] 2025-11-23 14:50:11,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 15:50:41] 2025-11-23 14:50:11,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 15:50:41] 2025-11-23 14:50:11,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 15:50:41] 2025-11-23 14:50:11,524 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 15:50:41] 2025-11-23 14:50:11,524 | INFO     | aborting loop
[2025-11-23 15:50:41] 2025-11-23 14:50:11,792 | INFO     | all data control threads have been joined
[2025-11-23 15:50:41] 2025-11-23 14:50:12,087 | INFO     | all payload control threads have been joined
[2025-11-23 15:50:41] 2025-11-23 14:50:12,529 | INFO     | [job] retrieve thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:12,529 | INFO     | [job] queue monitor thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:12,530 | INFO     | [job] job monitor thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:12,590 | INFO     | [payload] failed_post thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:12,627 | INFO     | all job control threads have been joined
[2025-11-23 15:50:41] 2025-11-23 14:50:12,675 | INFO     | [payload] validate_post thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:12,798 | INFO     | [data] control thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:12,851 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 15:50:41] 2025-11-23 14:50:12,910 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:13,093 | INFO     | [payload] control thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:13,480 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:13,633 | INFO     | [job] control thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:13,633 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:13,708 | INFO     | [data] copytool_in thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:13,814 | INFO     | [job] validate thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:14,857 | INFO     | [data] copytool_out thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:15,526 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:22,368 | INFO     | job.realtimelogging is not enabled
[2025-11-23 15:50:41] 2025-11-23 14:50:23,374 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 15:50:41] 2025-11-23 14:50:32,614 | INFO     | [monitor] cgroup control has ended
[2025-11-23 15:50:41] 2025-11-23 14:50:34,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140569371608896)>', '<ExcThread(monitor, started 140568365623040)>']
[2025-11-23 15:50:41] 2025-11-23 14:50:39,077 | INFO     | all workflow threads have been joined
[2025-11-23 15:50:41] 2025-11-23 14:50:39,077 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 15:50:41] 2025-11-23 14:50:39,077 | INFO     | traces error code: 0
[2025-11-23 15:50:41] 2025-11-23 14:50:39,077 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 15:50:41] 2025-11-23 14:50:41,136 | INFO     | PID=3006530 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 15:50:41] 2025-11-23 14:50:41,137 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 15:50:41] 2025-11-23 14:50:41,137 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 15:50:41] 2025-11-23 14:50:41,137 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 15:50:41] 2025-11-23 14:50:41,137 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 15:50:41] 2025-11-23 14:50:41,137 | INFO     | [monitor] control thread has ended
[2025-11-23 15:50:41] 2025-11-23 14:50:41,213 [wrapper] ==== pilot stdout END ====
[2025-11-23 15:50:41] 2025-11-23 14:50:41,217 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 15:50:41] 2025-11-23 14:50:41,221 [wrapper] pilotpid: 3006530
[2025-11-23 15:50:41] 2025-11-23 14:50:41,225 [wrapper] Pilot exit status: 0
[2025-11-23 15:50:41] 2025-11-23 14:50:41,237 [wrapper] pandaids: 6893847173
[2025-11-23 15:50:41] 2025-11-23 14:50:41,259 [wrapper] cleanup supervisor_pilot 3059269 3006531
[2025-11-23 15:50:41] 2025-11-23 14:50:41,263 [wrapper] Test setup, not cleaning
[2025-11-23 15:50:41] 2025-11-23 14:50:41,267 [wrapper] apfmon messages muted
[2025-11-23 15:50:41] 2025-11-23 14:50:41,271 [wrapper] ==== wrapper stdout END ====
[2025-11-23 15:50:41] 2025-11-23 14:50:41,274 [wrapper] ==== wrapper stderr END ====
[2025-11-23 15:50:41]  *** Error codes and diagnostics ***
[2025-11-23 15:50:41]     "exeErrorCode": 0,
[2025-11-23 15:50:41]     "exeErrorDiag": "",
[2025-11-23 15:50:41]     "pilotErrorCode": 0,
[2025-11-23 15:50:41]     "pilotErrorDiag": "",
[2025-11-23 15:50:41]  *** Listing of results directory ***
[2025-11-23 15:50:41] total 1310844
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-23 15:50:41] -rwx------ 1 boinc boinc     36292 Nov 20 11:23 runpilot2-wrapper.sh
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:25 queuedata.json
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc       100 Nov 23 09:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 15:50:41] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 09:00 run_atlas
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc       105 Nov 23 09:00 job.xml
[2025-11-23 15:50:41] -rw-r--r-- 2 boinc boinc 411584364 Nov 23 09:00 EVNT.47493127._000235.pool.root.1
[2025-11-23 15:50:41] -rw-r--r-- 2 boinc boinc    590101 Nov 23 09:00 input.tar.gz
[2025-11-23 15:50:41] -rw-r--r-- 2 boinc boinc     15847 Nov 23 09:00 start_atlas.sh
[2025-11-23 15:50:41] drwxrwx--x 2 boinc boinc      4096 Nov 23 09:00 shared
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc         0 Nov 23 09:00 boinc_setup_complete
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc      6376 Nov 23 09:00 init_data.xml
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc         0 Nov 23 09:00 boinc_lockfile
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc      2786 Nov 23 09:00 pandaJob.out
[2025-11-23 15:50:41] -rw------- 1 boinc boinc    989784 Nov 23 09:01 agis_schedconf.cvmfs.json
[2025-11-23 15:50:41] drwx------ 5 boinc boinc      4096 Nov 23 09:01 pilot3
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc       531 Nov 23 15:45 boinc_task_state.xml
[2025-11-23 15:50:41] -rw------- 1 boinc boinc 917366270 Nov 23 15:49 HITS.47523449._002344.pool.root.1
[2025-11-23 15:50:41] -rw------- 1 boinc boinc      1030 Nov 23 15:50 memory_monitor_summary.json
[2025-11-23 15:50:41] -rw------- 1 boinc boinc   1526164 Nov 23 15:50 agis_ddmendpoints.agis.ALL.json
[2025-11-23 15:50:41] -rw------- 1 boinc boinc   1259170 Nov 23 15:50 log.47523449._002344.job.log.tgz.1
[2025-11-23 15:50:41] -rw------- 1 boinc boinc      8579 Nov 23 15:50 heartbeat.json
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc      8192 Nov 23 15:50 boinc_mmap_file
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc        28 Nov 23 15:50 wrapper_checkpoint.txt
[2025-11-23 15:50:41] -rw------- 1 boinc boinc       747 Nov 23 15:50 pilotlog.txt
[2025-11-23 15:50:41] -rw------- 1 boinc boinc        95 Nov 23 15:50 pilot_heartbeat.json
[2025-11-23 15:50:41] -rw------- 1 boinc boinc   3465024 Nov 23 15:50 log.47523449._002344.job.log.1
[2025-11-23 15:50:41] -rw------- 1 boinc boinc       353 Nov 23 15:50 output.list
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc       620 Nov 23 15:50 runtime_log
[2025-11-23 15:50:41] -rw------- 1 boinc boinc   4741120 Nov 23 15:50 result.tar.gz
[2025-11-23 15:50:41] -rw------- 1 boinc boinc       668 Nov 23 15:50 xD4MDmqzGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3RHKDm97hyQm.diag
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc      8913 Nov 23 15:50 runtime_log.err
[2025-11-23 15:50:41] -rw-r--r-- 1 boinc boinc     11431 Nov 23 15:50 stderr.txt
[2025-11-23 15:50:41] HITS file was successfully produced:
[2025-11-23 15:50:41] -rw------- 1 boinc boinc 917366270 Nov 23 15:49 shared/HITS.pool.root.1
[2025-11-23 15:50:41]  *** Contents of shared directory: ***
[2025-11-23 15:50:41] total 1303044
[2025-11-23 15:50:41] -rw-r--r-- 2 boinc boinc 411584364 Nov 23 09:00 ATLAS.root_0
[2025-11-23 15:50:41] -rw-r--r-- 2 boinc boinc    590101 Nov 23 09:00 input.tar.gz
[2025-11-23 15:50:41] -rw-r--r-- 2 boinc boinc     15847 Nov 23 09:00 start_atlas.sh
[2025-11-23 15:50:41] -rw------- 1 boinc boinc 917366270 Nov 23 15:49 HITS.pool.root.1
[2025-11-23 15:50:41] -rw------- 1 boinc boinc   4741120 Nov 23 15:50 result.tar.gz
15:50:42 (3002728): run_atlas exited; CPU time 96109.831698
15:50:42 (3002728): called boinc_finish(0)

</stderr_txt>
]]>

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