Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:09:16 (29915): wrapper (7.7.26015): starting
02:09:16 (29915): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 02:09:16] Arguments: --nthreads 8
[2025-11-23 02:09:16] Threads: 8
[2025-11-23 02:09:16] Checking for CVMFS
[2025-11-23 02:09:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:09:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:09:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:09:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:09:18] 2.11.2.0 32354 280343 141696 153191 0 85 16501099 25165825 4632 130560 3 131923071 99.862 82697461 2994 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 02:09:18] CVMFS is ok
[2025-11-23 02:09:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:09:18] Checking for apptainer binary...
[2025-11-23 02:09:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:09:18] Running /usr/bin/apptainer --version
[2025-11-23 02:09:19] apptainer version 1.3.2-1.el7
[2025-11-23 02:09:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:09:33] cg-vwn392.simple-grid.lan
[2025-11-23 02:09:33] apptainer works
[2025-11-23 02:09:33] Set ATHENA_PROC_NUMBER=8
[2025-11-23 02:09:33] Set ATHENA_CORE_NUMBER=8
[2025-11-23 02:09:33] Starting ATLAS job with PandaID=6893847569
[2025-11-23 02:09:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:37:37]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:37:37] 2025-11-24 02:36:30,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:37:37] 2025-11-24 02:36:30,349 | INFO     | time since job start (91362s) is within the limit (172800.0s)
[2025-11-24 03:37:37] 2025-11-24 02:36:31,555 | INFO     | PID=1355 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 03:37:37] 2025-11-24 02:36:31,555 | INFO     | .. there are 9 such processes running
[2025-11-24 03:37:37] 2025-11-24 02:36:32,557 | INFO     | time since job start (91364s) is within the limit (172800.0s)
[2025-11-24 03:37:37] 2025-11-24 02:36:32,693 | INFO     | monitor loop #6142: job 0:6893847569 is in state 'finished'
[2025-11-24 03:37:37] 2025-11-24 02:36:32,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:37:37] 2025-11-24 02:36:34,564 | INFO     | time since job start (91366s) is within the limit (172800.0s)
[2025-11-24 03:37:37] 2025-11-24 02:36:35,201 | INFO     | monitor loop #6143: job 0:6893847569 is in state 'finished'
[2025-11-24 03:37:37] 2025-11-24 02:36:35,202 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:37:37] 2025-11-24 02:36:36,571 | INFO     | time since job start (91368s) is within the limit (172800.0s)
[2025-11-24 03:37:37] 2025-11-24 02:36:37,708 | INFO     | monitor loop #6144: job 0:6893847569 is in state 'finished'
[2025-11-24 03:37:37] 2025-11-24 02:36:37,709 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:37:37] 2025-11-24 02:36:38,148 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:37:37] 2025-11-24 02:36:38,149 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:37:37] 2025-11-24 02:36:38,151 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6893847569/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:37:37] 2025-11-24 02:36:38,152 | INFO     | extracted standard info from prmon json
[2025-11-24 03:37:37] 2025-11-24 02:36:38,152 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:37:37] 2025-11-24 02:36:38,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:37:37] 2025-11-24 02:36:38,195 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:37:37] 2025-11-24 02:36:38,198 | INFO     | sum of square deviations: 1021616658552.3622
[2025-11-24 03:37:37] 2025-11-24 02:36:38,274 | INFO     | sum of deviations: 4039166839822.6025
[2025-11-24 03:37:37] 2025-11-24 02:36:38,275 | INFO     | mean x: 1763906306.858871
[2025-11-24 03:37:37] 2025-11-24 02:36:38,275 | INFO     | mean y: 2838456.2123655914
[2025-11-24 03:37:37] 2025-11-24 02:36:38,276 | INFO     | intersect: -6971119734.048617
[2025-11-24 03:37:37] 2025-11-24 02:36:38,278 | INFO     | chi2: 25.54743868442936
[2025-11-24 03:37:37] 2025-11-24 02:36:38,280 | INFO     | sum of square deviations: 1011353306063.0979
[2025-11-24 03:37:37] 2025-11-24 02:36:38,352 | INFO     | sum of deviations: 4527878806616.426
[2025-11-24 03:37:37] 2025-11-24 02:36:38,352 | INFO     | mean x: 1763906154.3634524
[2025-11-24 03:37:37] 2025-11-24 02:36:38,352 | INFO     | mean y: 2845716.2144302092
[2025-11-24 03:37:37] 2025-11-24 02:36:38,353 | INFO     | intersect: -7894249438.685145
[2025-11-24 03:37:37] 2025-11-24 02:36:38,354 | INFO     | chi2: 22.401484928642187
[2025-11-24 03:37:37] 2025-11-24 02:36:38,355 | INFO     | current chi2=22.401484928642187 (change=12.314165011401187 %)
[2025-11-24 03:37:37] 2025-11-24 02:36:38,355 | INFO     | right removable region: 1482
[2025-11-24 03:37:37] 2025-11-24 02:36:38,357 | INFO     | sum of square deviations: 1011352072643.0994
[2025-11-24 03:37:37] 2025-11-24 02:36:38,435 | INFO     | sum of deviations: 3411507599569.847
[2025-11-24 03:37:37] 2025-11-24 02:36:38,435 | INFO     | mean x: 1763906459.3634524
[2025-11-24 03:37:37] 2025-11-24 02:36:38,435 | INFO     | mean y: 2847781.1227242076
[2025-11-24 03:37:37] 2025-11-24 02:36:38,435 | INFO     | intersect: -5947187279.686738
[2025-11-24 03:37:37] 2025-11-24 02:36:38,437 | INFO     | chi2: 20.710125134386576
[2025-11-24 03:37:37] 2025-11-24 02:36:38,438 | INFO     | current chi2=20.710125134386576 (change=18.934632194620068 %)
[2025-11-24 03:37:37] 2025-11-24 02:36:38,438 | INFO     | left removable region: 10
[2025-11-24 03:37:37] 2025-11-24 02:36:38,440 | INFO     | sum of square deviations: 989013938990.4979
[2025-11-24 03:37:37] 2025-11-24 02:36:38,500 | INFO     | sum of deviations: 3424371388776.8677
[2025-11-24 03:37:37] 2025-11-24 02:36:38,501 | INFO     | mean x: 1763906428.8736413
[2025-11-24 03:37:37] 2025-11-24 02:36:38,501 | INFO     | mean y: 2865123.305706522
[2025-11-24 03:37:37] 2025-11-24 02:36:38,501 | INFO     | intersect: -6104501486.390285
[2025-11-24 03:37:37] 2025-11-24 02:36:38,503 | INFO     | chi2: 13.033664724905389
[2025-11-24 03:37:37] 2025-11-24 02:36:38,503 | INFO     | current memory leak: 3.46 B/s (using 1472 data points, chi2=13.03)
[2025-11-24 03:37:37] 2025-11-24 02:36:38,506 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | ..............................
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | . Timing measurements:
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | . get job = 0 s
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | . initial setup = 9 s
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | . payload setup = 164 s
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | . stage-in = 0 s
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | . payload execution = 90881 s
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | . stage-out = 5 s
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | . log creation = 2 s
[2025-11-24 03:37:37] 2025-11-24 02:36:38,507 | INFO     | ..............................
[2025-11-24 03:37:37] 2025-11-24 02:36:38,601 | INFO     | time since job start (91370s) is within the limit (172800.0s)
[2025-11-24 03:37:37] 2025-11-24 02:36:38,652 | INFO     | 
[2025-11-24 03:37:37] 2025-11-24 02:36:38,653 | INFO     | job summary report
[2025-11-24 03:37:37] 2025-11-24 02:36:38,653 | INFO     | --------------------------------------------------
[2025-11-24 03:37:37] 2025-11-24 02:36:38,653 | INFO     | PanDA job id: 6893847569
[2025-11-24 03:37:37] 2025-11-24 02:36:38,653 | INFO     | task id: 47523449
[2025-11-24 03:37:37] 2025-11-24 02:36:38,653 | INFO     | errors: (none)
[2025-11-24 03:37:37] 2025-11-24 02:36:38,653 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:37:37] 2025-11-24 02:36:38,653 | INFO     | pilot state: finished 
[2025-11-24 03:37:37] 2025-11-24 02:36:38,653 | INFO     | transexitcode: 0
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | exeerrorcode: 0
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | exeerrordiag: 
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | exitcode: 0
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | exitmsg: OK
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | cpuconsumptiontime: 334419 s
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | nevents: 1000
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | neventsw: 0
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | pid: 7934
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | pgrp: 7934
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | corecount: 8
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | event service: False
[2025-11-24 03:37:37] 2025-11-24 02:36:38,654 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298863, 13: 2298863, 24: 2298919, 34: 2298947, 45: 2299103, 56: 2299131, 67: 2299159, 77: 2299187, 88: 2299243, 99: 2299551, 10
[2025-11-24 03:37:37] 2025-11-24 02:36:38,655 | INFO     | --------------------------------------------------
[2025-11-24 03:37:37] 2025-11-24 02:36:38,655 | INFO     | 
[2025-11-24 03:37:37] 2025-11-24 02:36:38,655 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-11-24 03:37:37] 2025-11-24 02:36:39,248 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,249 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,249 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,249 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,249 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,249 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,250 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:37:37] 2025-11-24 02:36:39,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:37:37] 2025-11-24 02:36:39,251 | INFO     | job 6893847569 has completed (purged errors)
[2025-11-24 03:37:37] 2025-11-24 02:36:39,251 | INFO     | overall cleanup function is called
[2025-11-24 03:37:37] 2025-11-24 02:36:40,270 | INFO     | --- collectZombieJob: --- 10, [7934]
[2025-11-24 03:37:37] 2025-11-24 02:36:40,271 | INFO     | zombie collector waiting for pid 7934
[2025-11-24 03:37:37] 2025-11-24 02:36:40,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:37:37] 2025-11-24 02:36:40,271 | INFO     | collected zombie processes
[2025-11-24 03:37:37] 2025-11-24 02:36:40,271 | INFO     | will attempt to kill all subprocesses of pid=7934
[2025-11-24 03:37:37] 2025-11-24 02:36:40,416 | INFO     | process IDs to be killed: [7934] (in reverse order)
[2025-11-24 03:37:37] 2025-11-24 02:36:41,463 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:37:37] 2025-11-24 02:36:41,464 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:37:37] 2025-11-24 02:36:41,473 | INFO     | did not find any defunct processes belonging to 7934
[2025-11-24 03:37:37] 2025-11-24 02:36:41,477 | INFO     | did not find any defunct processes belonging to 7934
[2025-11-24 03:37:37] 2025-11-24 02:36:41,532 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:37:37] 2025-11-24 02:36:41,532 | INFO     | ready for new job
[2025-11-24 03:37:37] 2025-11-24 02:36:41,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:37:37] 2025-11-24 02:36:41,540 | INFO     | ***************************************
[2025-11-24 03:37:37] 2025-11-24 02:36:41,540 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:37:37] 2025-11-24 02:36:41,540 | INFO     | ***************************************
[2025-11-24 03:37:37] 2025-11-24 02:36:41,540 | INFO     | 
[2025-11-24 03:37:37] 2025-11-24 02:36:41,541 | INFO     | pilot is running in a VM
[2025-11-24 03:37:37] 2025-11-24 02:36:41,541 | INFO     | architecture information:
[2025-11-24 03:37:37] 2025-11-24 02:36:41,548 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:37:37] 2025-11-24 02:36:41,776 | INFO     | cat /etc/os-release:
[2025-11-24 03:37:37] NAME="CentOS Linux"
[2025-11-24 03:37:37] VERSION="7 (Core)"
[2025-11-24 03:37:37] ID="centos"
[2025-11-24 03:37:37] ID_LIKE="rhel fedora"
[2025-11-24 03:37:37] VERSION_ID="7"
[2025-11-24 03:37:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:37:37] ANSI_COLOR="0;31"
[2025-11-24 03:37:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:37:37] HOME_URL="https://www.centos.org/"
[2025-11-24 03:37:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:37:37] 
[2025-11-24 03:37:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:37:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:37:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:37:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:37:37] 
[2025-11-24 03:37:37] 2025-11-24 02:36:41,777 | INFO     | ***************************************
[2025-11-24 03:37:37] 2025-11-24 02:36:42,281 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-11-24 03:37:37] 2025-11-24 02:36:42,542 | INFO     | sufficient remaining disk space (494878588928 B)
[2025-11-24 03:37:37] 2025-11-24 02:36:42,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:37:37] 2025-11-24 02:36:42,542 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:37:37] 2025-11-24 02:36:42,543 | INFO     | update_server=False
[2025-11-24 03:37:37] 2025-11-24 02:36:42,543 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:37:37] 2025-11-24 02:36:42,722 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 03:37:37] 2025-11-24 02:36:42,723 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 03:37:37] 2025-11-24 02:36:42,723 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:37:37] 2025-11-24 02:36:42,723 | INFO     | will abort loop
[2025-11-24 03:37:37] 2025-11-24 02:36:42,892 | INFO     | all payload control threads have been joined
[2025-11-24 03:37:37] 2025-11-24 02:36:42,898 | INFO     | all data control threads have been joined
[2025-11-24 03:37:37] 2025-11-24 02:36:43,465 | INFO     | all job control threads have been joined
[2025-11-24 03:37:37] 2025-11-24 02:36:43,549 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:43,644 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:43,667 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:43,668 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:37:37] 2025-11-24 02:36:43,730 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:43,819 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:37:37] 2025-11-24 02:36:43,847 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:43,899 | INFO     | [payload] control thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:43,904 | INFO     | [data] control thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:43,933 | INFO     | [job] validate thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:44,252 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:44,471 | INFO     | [job] control thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:44,674 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:44,742 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:44,743 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:44,864 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:45,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:37:37] 2025-11-24 02:36:45,826 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:36:49,363 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:37:37] 2025-11-24 02:37:11,791 | INFO     | PID=1355 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 03:37:37] 2025-11-24 02:37:11,791 | INFO     | .. there are 9 such processes running
[2025-11-24 03:37:37] 2025-11-24 02:37:11,792 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:37:37] 2025-11-24 02:37:11,792 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:37:37] 2025-11-24 02:37:11,792 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:37:37] 2025-11-24 02:37:27,610 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:37:37] 2025-11-24 02:37:29,448 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139986360604480)>', '<ExcThread(monitor, started 139985776789248)>']
[2025-11-24 03:37:37] 2025-11-24 02:37:29,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:37:37] 2025-11-24 02:37:29,899 | INFO     | [monitor] control thread has ended
[2025-11-24 03:37:37] 2025-11-24 02:37:34,475 | INFO     | all workflow threads have been joined
[2025-11-24 03:37:37] 2025-11-24 02:37:34,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:37:37] 2025-11-24 02:37:34,476 | INFO     | traces error code: 0
[2025-11-24 03:37:37] 2025-11-24 02:37:34,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:37:37] 2025-11-24 02:37:34,906 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:37:37] 2025-11-24 02:37:34,990 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:37:37] 2025-11-24 02:37:35,069 [wrapper] pilotpid: 1355
[2025-11-24 03:37:37] 2025-11-24 02:37:35,163 [wrapper] Pilot exit status: 0
[2025-11-24 03:37:37] 2025-11-24 02:37:35,287 [wrapper] pandaids: 6893847569
[2025-11-24 03:37:37] 2025-11-24 02:37:35,335 [wrapper] cleanup supervisor_pilot  6720 1356
[2025-11-24 03:37:37] 2025-11-24 02:37:35,353 [wrapper] Test setup, not cleaning
[2025-11-24 03:37:37] 2025-11-24 02:37:35,365 [wrapper] apfmon messages muted
[2025-11-24 03:37:37] 2025-11-24 02:37:35,446 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:37:37] 2025-11-24 02:37:35,552 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:37:37]  *** Error codes and diagnostics ***
[2025-11-24 03:37:37]     "exeErrorCode": 0,
[2025-11-24 03:37:37]     "exeErrorDiag": "",
[2025-11-24 03:37:37]     "pilotErrorCode": 0,
[2025-11-24 03:37:37]     "pilotErrorDiag": "",
[2025-11-24 03:37:37]  *** Listing of results directory ***
[2025-11-24 03:37:37] total 1319260
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 03:37:37] -rwx------. 1 boinc boinc     36292 Nov 20 11:22 runpilot2-wrapper.sh
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:25 queuedata.json
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc       100 Nov 23 02:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:37:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 02:09 run_atlas
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc       105 Nov 23 02:09 job.xml
[2025-11-24 03:37:37] -rw-r--r--. 2 boinc boinc 410131197 Nov 23 02:09 EVNT.47493127._000239.pool.root.1
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc      6392 Nov 23 02:09 init_data.xml
[2025-11-24 03:37:37] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:09 start_atlas.sh
[2025-11-24 03:37:37] drwxrwx--x. 2 boinc boinc        68 Nov 23 02:09 shared
[2025-11-24 03:37:37] -rw-r--r--. 2 boinc boinc    590101 Nov 23 02:09 input.tar.gz
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc         0 Nov 23 02:09 boinc_lockfile
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc      2786 Nov 23 02:09 pandaJob.out
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc    989784 Nov 23 02:13 agis_schedconf.cvmfs.json
[2025-11-24 03:37:37] drwx------. 5 boinc boinc      4096 Nov 23 02:13 pilot3
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc       533 Nov 24 03:08 boinc_task_state.xml
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc 907426794 Nov 24 03:33 HITS.47523449._002386.pool.root.1
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc      1031 Nov 24 03:34 memory_monitor_summary.json
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc   1526164 Nov 24 03:34 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc   2568736 Nov 24 03:34 log.47523449._002386.job.log.tgz.1
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc        95 Nov 24 03:36 pilot_heartbeat.json
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc      8641 Nov 24 03:36 heartbeat.json
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:37 boinc_mmap_file
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:37 wrapper_checkpoint.txt
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc      5069 Nov 24 03:37 pilotlog.txt
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc  12159205 Nov 24 03:37 log.47523449._002386.job.log.1
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc       353 Nov 24 03:37 output.list
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:37 runtime_log
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc  14745600 Nov 24 03:37 result.tar.gz
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc       662 Nov 24 03:37 Y9FKDmhzGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHQHKDmBwohxn.diag
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc      8817 Nov 24 03:37 runtime_log.err
[2025-11-24 03:37:37] -rw-r--r--. 1 boinc boinc     21489 Nov 24 03:37 stderr.txt
[2025-11-24 03:37:37] HITS file was successfully produced:
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc 907426794 Nov 24 03:33 shared/HITS.pool.root.1
[2025-11-24 03:37:37]  *** Contents of shared directory: ***
[2025-11-24 03:37:37] total 1301676
[2025-11-24 03:37:37] -rw-r--r--. 2 boinc boinc 410131197 Nov 23 02:09 ATLAS.root_0
[2025-11-24 03:37:37] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:09 start_atlas.sh
[2025-11-24 03:37:37] -rw-r--r--. 2 boinc boinc    590101 Nov 23 02:09 input.tar.gz
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc 907426794 Nov 24 03:33 HITS.pool.root.1
[2025-11-24 03:37:37] -rw-------. 1 boinc boinc  14745600 Nov 24 03:37 result.tar.gz
03:37:38 (29915): run_atlas exited; CPU time 334897.052282
03:37:38 (29915): called boinc_finish(0)

</stderr_txt>
]]>

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