Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:52:54 (17466): wrapper (7.7.26015): starting
03:52:54 (17466): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 03:52:54] Arguments: --nthreads 8
[2025-11-23 03:52:54] Threads: 8
[2025-11-23 03:52:54] Checking for CVMFS
[2025-11-23 03:52:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:52:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:52:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:52:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:52:56] 2.11.2.0 3687 280509 139684 153193 0 128 21796499 25165824 4296 130560 2 144330671 99.885 73618709 2734 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 03:52:56] CVMFS is ok
[2025-11-23 03:52:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:52:56] Checking for apptainer binary...
[2025-11-23 03:52:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:52:56] Running /usr/bin/apptainer --version
[2025-11-23 03:52:56] apptainer version 1.3.2-1.el7
[2025-11-23 03:52:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:53:04] cg-vwn214.simple-grid.lan
[2025-11-23 03:53:04] apptainer works
[2025-11-23 03:53:04] Set ATHENA_PROC_NUMBER=8
[2025-11-23 03:53:04] Set ATHENA_CORE_NUMBER=8
[2025-11-23 03:53:04] Starting ATLAS job with PandaID=6893844004
[2025-11-23 03:53:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:19:53]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:19:53] 2025-11-24 04:18:50,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:19:53] 2025-11-24 04:18:50,656 | INFO     | time since job start (91366s) is within the limit (172800.0s)
[2025-11-24 05:19:53] 2025-11-24 04:18:52,517 | INFO     | monitor loop #6129: job 0:6893844004 is in state 'finished'
[2025-11-24 05:19:53] 2025-11-24 04:18:52,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:19:53] 2025-11-24 04:18:52,668 | INFO     | time since job start (91368s) is within the limit (172800.0s)
[2025-11-24 05:19:53] 2025-11-24 04:18:54,680 | INFO     | time since job start (91370s) is within the limit (172800.0s)
[2025-11-24 05:19:53] 2025-11-24 04:18:55,027 | INFO     | monitor loop #6130: job 0:6893844004 is in state 'finished'
[2025-11-24 05:19:53] 2025-11-24 04:18:55,027 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:19:53] 2025-11-24 04:18:55,874 | INFO     | PID=21383 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 05:19:53] 2025-11-24 04:18:55,874 | INFO     | .. there are 9 such processes running
[2025-11-24 05:19:53] 2025-11-24 04:18:56,875 | INFO     | time since job start (91372s) is within the limit (172800.0s)
[2025-11-24 05:19:53] 2025-11-24 04:18:57,534 | INFO     | monitor loop #6131: job 0:6893844004 is in state 'finished'
[2025-11-24 05:19:53] 2025-11-24 04:18:57,534 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:19:53] 2025-11-24 04:18:58,882 | INFO     | time since job start (91374s) is within the limit (172800.0s)
[2025-11-24 05:19:53] 2025-11-24 04:18:59,498 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 05:19:53] 2025-11-24 04:18:59,499 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 05:19:53] 2025-11-24 04:18:59,501 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6893844004/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:19:53] 2025-11-24 04:18:59,502 | INFO     | extracted standard info from prmon json
[2025-11-24 05:19:53] 2025-11-24 04:18:59,502 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:19:53] 2025-11-24 04:18:59,502 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:19:53] 2025-11-24 04:18:59,546 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:19:53] 2025-11-24 04:18:59,549 | INFO     | sum of square deviations: 1025737432098.43
[2025-11-24 05:19:53] 2025-11-24 04:18:59,650 | INFO     | sum of deviations: 3103848629182.612
[2025-11-24 05:19:53] 2025-11-24 04:18:59,651 | INFO     | mean x: 1763912393.924161
[2025-11-24 05:19:53] 2025-11-24 04:18:59,651 | INFO     | mean y: 2854037.377181208
[2025-11-24 05:19:53] 2025-11-24 04:18:59,651 | INFO     | intersect: -5334688392.637552
[2025-11-24 05:19:53] 2025-11-24 04:18:59,653 | INFO     | chi2: 16.729279527980207
[2025-11-24 05:19:53] 2025-11-24 04:18:59,655 | INFO     | sum of square deviations: 1015446453775.7552
[2025-11-24 05:19:53] 2025-11-24 04:18:59,745 | INFO     | sum of deviations: 3606624826040.3813
[2025-11-24 05:19:53] 2025-11-24 04:18:59,745 | INFO     | mean x: 1763912241.4289563
[2025-11-24 05:19:53] 2025-11-24 04:18:59,745 | INFO     | mean y: 2861486.581818182
[2025-11-24 05:19:53] 2025-11-24 04:18:59,745 | INFO     | intersect: -6262136197.184874
[2025-11-24 05:19:53] 2025-11-24 04:18:59,747 | INFO     | chi2: 13.404861024680446
[2025-11-24 05:19:53] 2025-11-24 04:18:59,747 | INFO     | current chi2=13.404861024680446 (change=19.871856990252173 %)
[2025-11-24 05:19:53] 2025-11-24 04:18:59,747 | INFO     | right removable region: 1484
[2025-11-24 05:19:53] 2025-11-24 04:18:59,750 | INFO     | sum of square deviations: 1015445159355.7554
[2025-11-24 05:19:53] 2025-11-24 04:18:59,818 | INFO     | sum of deviations: 2567888516714.916
[2025-11-24 05:19:53] 2025-11-24 04:18:59,818 | INFO     | mean x: 1763912546.4289563
[2025-11-24 05:19:53] 2025-11-24 04:18:59,818 | INFO     | mean y: 2861976.8902356904
[2025-11-24 05:19:53] 2025-11-24 04:18:59,819 | INFO     | intersect: -4457773568.743783
[2025-11-24 05:19:53] 2025-11-24 04:18:59,820 | INFO     | chi2: 13.38347973904858
[2025-11-24 05:19:53] 2025-11-24 04:18:59,821 | INFO     | current chi2=13.38347973904858 (change=19.999664560184314 %)
[2025-11-24 05:19:53] 2025-11-24 04:18:59,821 | INFO     | left removable region: 10
[2025-11-24 05:19:53] 2025-11-24 04:18:59,823 | INFO     | sum of square deviations: 993046785614.2574
[2025-11-24 05:19:53] 2025-11-24 04:18:59,886 | INFO     | sum of deviations: 2953842674638.544
[2025-11-24 05:19:53] 2025-11-24 04:18:59,887 | INFO     | mean x: 1763912515.9375849
[2025-11-24 05:19:53] 2025-11-24 04:18:59,887 | INFO     | mean y: 2874703.6146540027
[2025-11-24 05:19:53] 2025-11-24 04:18:59,887 | INFO     | intersect: -5243927500.85811
[2025-11-24 05:19:53] 2025-11-24 04:18:59,889 | INFO     | chi2: 8.538843126602409
[2025-11-24 05:19:53] 2025-11-24 04:18:59,889 | INFO     | current memory leak: 2.97 B/s (using 1474 data points, chi2=8.54)
[2025-11-24 05:19:53] 2025-11-24 04:18:59,892 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 05:19:53] 2025-11-24 04:18:59,892 | INFO     | ..............................
[2025-11-24 05:19:53] 2025-11-24 04:18:59,892 | INFO     | . Timing measurements:
[2025-11-24 05:19:53] 2025-11-24 04:18:59,892 | INFO     | . get job = 0 s
[2025-11-24 05:19:53] 2025-11-24 04:18:59,892 | INFO     | . initial setup = 3 s
[2025-11-24 05:19:53] 2025-11-24 04:18:59,893 | INFO     | . payload setup = 97 s
[2025-11-24 05:19:53] 2025-11-24 04:18:59,893 | INFO     | . stage-in = 0 s
[2025-11-24 05:19:53] 2025-11-24 04:18:59,893 | INFO     | . payload execution = 90986 s
[2025-11-24 05:19:53] 2025-11-24 04:18:59,893 | INFO     | . stage-out = 6 s
[2025-11-24 05:19:53] 2025-11-24 04:18:59,893 | INFO     | . log creation = 2 s
[2025-11-24 05:19:53] 2025-11-24 04:18:59,893 | INFO     | ..............................
[2025-11-24 05:19:53] 2025-11-24 04:19:00,022 | INFO     | 
[2025-11-24 05:19:53] 2025-11-24 04:19:00,022 | INFO     | job summary report
[2025-11-24 05:19:53] 2025-11-24 04:19:00,022 | INFO     | --------------------------------------------------
[2025-11-24 05:19:53] 2025-11-24 04:19:00,022 | INFO     | PanDA job id: 6893844004
[2025-11-24 05:19:53] 2025-11-24 04:19:00,022 | INFO     | task id: 47523449
[2025-11-24 05:19:53] 2025-11-24 04:19:00,022 | INFO     | errors: (none)
[2025-11-24 05:19:53] 2025-11-24 04:19:00,022 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | pilot state: finished 
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | transexitcode: 0
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | exeerrorcode: 0
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | exeerrordiag: 
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | exitcode: 0
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | exitmsg: OK
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | cpuconsumptiontime: 333531 s
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | nevents: 1000
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | neventsw: 0
[2025-11-24 05:19:53] 2025-11-24 04:19:00,023 | INFO     | pid: 28179
[2025-11-24 05:19:53] 2025-11-24 04:19:00,024 | INFO     | pgrp: 28179
[2025-11-24 05:19:53] 2025-11-24 04:19:00,024 | INFO     | corecount: 8
[2025-11-24 05:19:53] 2025-11-24 04:19:00,024 | INFO     | event service: False
[2025-11-24 05:19:53] 2025-11-24 04:19:00,024 | INFO     | sizes: {0: 2298637, 1: 2298836, 12: 2298836, 23: 2298864, 33: 2298892, 44: 2298948, 55: 2299104, 66: 2299132, 76: 2299160, 87: 2299216, 95: 2299506, 98: 2299814, 9
[2025-11-24 05:19:53] 2025-11-24 04:19:00,024 | INFO     | --------------------------------------------------
[2025-11-24 05:19:53] 2025-11-24 04:19:00,024 | INFO     | 
[2025-11-24 05:19:53] 2025-11-24 04:19:00,024 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-24 05:19:53] 2025-11-24 04:19:00,317 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,317 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,318 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | job 6893844004 has completed (purged errors)
[2025-11-24 05:19:53] 2025-11-24 04:19:00,319 | INFO     | overall cleanup function is called
[2025-11-24 05:19:53] 2025-11-24 04:19:01,345 | INFO     | --- collectZombieJob: --- 10, [28179]
[2025-11-24 05:19:53] 2025-11-24 04:19:01,345 | INFO     | zombie collector waiting for pid 28179
[2025-11-24 05:19:53] 2025-11-24 04:19:01,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:19:53] 2025-11-24 04:19:01,345 | INFO     | collected zombie processes
[2025-11-24 05:19:53] 2025-11-24 04:19:01,345 | INFO     | will attempt to kill all subprocesses of pid=28179
[2025-11-24 05:19:53] 2025-11-24 04:19:01,474 | INFO     | process IDs to be killed: [28179] (in reverse order)
[2025-11-24 05:19:53] 2025-11-24 04:19:01,667 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:19:53] 2025-11-24 04:19:01,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:19:53] 2025-11-24 04:19:01,671 | INFO     | did not find any defunct processes belonging to 28179
[2025-11-24 05:19:53] 2025-11-24 04:19:01,675 | INFO     | did not find any defunct processes belonging to 28179
[2025-11-24 05:19:53] 2025-11-24 04:19:01,686 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:19:53] 2025-11-24 04:19:01,687 | INFO     | ready for new job
[2025-11-24 05:19:53] 2025-11-24 04:19:01,687 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:19:53] 2025-11-24 04:19:01,694 | INFO     | ***************************************
[2025-11-24 05:19:53] 2025-11-24 04:19:01,694 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:19:53] 2025-11-24 04:19:01,695 | INFO     | ***************************************
[2025-11-24 05:19:53] 2025-11-24 04:19:01,695 | INFO     | 
[2025-11-24 05:19:53] 2025-11-24 04:19:01,695 | INFO     | pilot is running in a VM
[2025-11-24 05:19:53] 2025-11-24 04:19:01,696 | INFO     | architecture information:
[2025-11-24 05:19:53] 2025-11-24 04:19:01,696 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:19:53] 2025-11-24 04:19:01,803 | INFO     | cat /etc/os-release:
[2025-11-24 05:19:53] NAME="CentOS Linux"
[2025-11-24 05:19:53] VERSION="7 (Core)"
[2025-11-24 05:19:53] ID="centos"
[2025-11-24 05:19:53] ID_LIKE="rhel fedora"
[2025-11-24 05:19:53] VERSION_ID="7"
[2025-11-24 05:19:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:19:53] ANSI_COLOR="0;31"
[2025-11-24 05:19:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:19:53] HOME_URL="https://www.centos.org/"
[2025-11-24 05:19:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:19:53] 
[2025-11-24 05:19:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:19:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:19:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:19:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:19:53] 
[2025-11-24 05:19:53] 2025-11-24 04:19:01,804 | INFO     | ***************************************
[2025-11-24 05:19:53] 2025-11-24 04:19:02,307 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-24 05:19:53] 2025-11-24 04:19:02,485 | INFO     | sufficient remaining disk space (493495517184 B)
[2025-11-24 05:19:53] 2025-11-24 04:19:02,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:19:53] 2025-11-24 04:19:02,485 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:19:53] 2025-11-24 04:19:02,485 | INFO     | update_server=False
[2025-11-24 05:19:53] 2025-11-24 04:19:02,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:19:53] 2025-11-24 04:19:02,576 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 05:19:53] 2025-11-24 04:19:02,576 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 05:19:53] 2025-11-24 04:19:02,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:19:53] 2025-11-24 04:19:02,576 | INFO     | will abort loop
[2025-11-24 05:19:53] 2025-11-24 04:19:02,852 | INFO     | all payload control threads have been joined
[2025-11-24 05:19:53] 2025-11-24 04:19:02,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:19:53] 2025-11-24 04:19:02,917 | INFO     | all job control threads have been joined
[2025-11-24 05:19:53] 2025-11-24 04:19:03,151 | INFO     | all data control threads have been joined
[2025-11-24 05:19:53] 2025-11-24 04:19:03,492 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:03,583 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:03,598 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:03,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:19:53] 2025-11-24 04:19:03,785 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:03,858 | INFO     | [payload] control thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:03,923 | INFO     | [job] control thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:03,948 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:04,000 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:04,157 | INFO     | [data] control thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:04,363 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:04,464 | INFO     | [job] validate thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:04,566 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:05,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:19:53] 2025-11-24 04:19:05,057 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:05,716 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:06,042 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:06,903 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:19:53] 2025-11-24 04:19:32,090 | INFO     | PID=21383 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 05:19:53] 2025-11-24 04:19:32,090 | INFO     | .. there are 9 such processes running
[2025-11-24 05:19:53] 2025-11-24 04:19:32,091 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:19:53] 2025-11-24 04:19:32,092 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:19:53] 2025-11-24 04:19:32,092 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:19:53] 2025-11-24 04:19:43,862 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:19:53] 2025-11-24 04:19:44,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140625434216256)>', '<ExcThread(monitor, started 140624401524480)>']
[2025-11-24 05:19:53] 2025-11-24 04:19:45,169 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:19:53] 2025-11-24 04:19:45,170 | INFO     | [monitor] control thread has ended
[2025-11-24 05:19:53] 2025-11-24 04:19:49,290 | INFO     | all workflow threads have been joined
[2025-11-24 05:19:53] 2025-11-24 04:19:49,290 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:19:53] 2025-11-24 04:19:49,290 | INFO     | traces error code: 0
[2025-11-24 05:19:53] 2025-11-24 04:19:49,290 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:19:53] 2025-11-24 04:19:49,743 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:19:53] 2025-11-24 04:19:49,822 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:19:53] 2025-11-24 04:19:49,919 [wrapper] pilotpid: 21383
[2025-11-24 05:19:53] 2025-11-24 04:19:49,972 [wrapper] Pilot exit status: 0
[2025-11-24 05:19:53] 2025-11-24 04:19:50,179 [wrapper] pandaids: 6893844004
[2025-11-24 05:19:53] 2025-11-24 04:19:50,850 [wrapper] cleanup supervisor_pilot 12396 21384
[2025-11-24 05:19:53] 2025-11-24 04:19:50,879 [wrapper] Test setup, not cleaning
[2025-11-24 05:19:53] 2025-11-24 04:19:50,925 [wrapper] apfmon messages muted
[2025-11-24 05:19:53] 2025-11-24 04:19:51,004 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:19:53] 2025-11-24 04:19:51,057 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:19:53]  *** Error codes and diagnostics ***
[2025-11-24 05:19:53]     "exeErrorCode": 0,
[2025-11-24 05:19:53]     "exeErrorDiag": "",
[2025-11-24 05:19:53]     "pilotErrorCode": 0,
[2025-11-24 05:19:53]     "pilotErrorDiag": "",
[2025-11-24 05:19:53]  *** Listing of results directory ***
[2025-11-24 05:19:53] total 1320368
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 05:19:53] -rwx------. 1 boinc boinc     36292 Nov 20 11:22 runpilot2-wrapper.sh
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:23 queuedata.json
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc       100 Nov 23 03:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:19:53] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 03:52 run_atlas
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc       105 Nov 23 03:52 job.xml
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc      6392 Nov 23 03:52 init_data.xml
[2025-11-24 05:19:53] -rw-r--r--. 2 boinc boinc 409325859 Nov 23 03:52 EVNT.47493127._000210.pool.root.1
[2025-11-24 05:19:53] -rw-r--r--. 2 boinc boinc     15847 Nov 23 03:52 start_atlas.sh
[2025-11-24 05:19:53] drwxrwx--x. 2 boinc boinc        68 Nov 23 03:52 shared
[2025-11-24 05:19:53] -rw-r--r--. 2 boinc boinc    590105 Nov 23 03:52 input.tar.gz
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc         0 Nov 23 03:52 boinc_lockfile
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc      2786 Nov 23 03:53 pandaJob.out
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc    989784 Nov 23 03:56 agis_schedconf.cvmfs.json
[2025-11-24 05:19:53] drwx------. 5 boinc boinc      4096 Nov 23 03:56 pilot3
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc       533 Nov 24 04:55 boinc_task_state.xml
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc 909325001 Nov 24 05:16 HITS.47523449._002093.pool.root.1
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc      1030 Nov 24 05:17 memory_monitor_summary.json
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc   1526164 Nov 24 05:17 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc   2565729 Nov 24 05:17 log.47523449._002093.job.log.tgz.1
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc      8624 Nov 24 05:18 heartbeat.json
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc        95 Nov 24 05:19 pilot_heartbeat.json
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc      5071 Nov 24 05:19 pilotlog.txt
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc      8192 Nov 24 05:19 boinc_mmap_file
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc        29 Nov 24 05:19 wrapper_checkpoint.txt
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc  12184092 Nov 24 05:19 log.47523449._002093.job.log.1
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc       353 Nov 24 05:19 output.list
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc       620 Nov 24 05:19 runtime_log
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc  14766080 Nov 24 05:19 result.tar.gz
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc      8833 Nov 24 05:19 runtime_log.err
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc       662 Nov 24 05:19 37VNDmqyGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNSGKDm6UaYSn.diag
[2025-11-24 05:19:53] -rw-r--r--. 1 boinc boinc     21494 Nov 24 05:19 stderr.txt
[2025-11-24 05:19:53] HITS file was successfully produced:
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc 909325001 Nov 24 05:16 shared/HITS.pool.root.1
[2025-11-24 05:19:53]  *** Contents of shared directory: ***
[2025-11-24 05:19:53] total 1302768
[2025-11-24 05:19:53] -rw-r--r--. 2 boinc boinc 409325859 Nov 23 03:52 ATLAS.root_0
[2025-11-24 05:19:53] -rw-r--r--. 2 boinc boinc     15847 Nov 23 03:52 start_atlas.sh
[2025-11-24 05:19:53] -rw-r--r--. 2 boinc boinc    590105 Nov 23 03:52 input.tar.gz
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc 909325001 Nov 24 05:16 HITS.pool.root.1
[2025-11-24 05:19:53] -rw-------. 1 boinc boinc  14766080 Nov 24 05:19 result.tar.gz
05:19:54 (17466): run_atlas exited; CPU time 334067.050147
05:19:54 (17466): called boinc_finish(0)

</stderr_txt>
]]>

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