Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:39:39 (19618): wrapper (7.7.26015): starting
00:39:39 (19618): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:39:39] Arguments: --nthreads 8
[2025-11-23 00:39:39] Threads: 8
[2025-11-23 00:39:39] Checking for CVMFS
[2025-11-23 00:39:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:39:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:39:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:39:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:39:42] 2.11.2.0 32728 280107 143584 153190 0 128 18293301 25165824 4296 130560 2 138168609 99.888 74939168 3101 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 00:39:42] CVMFS is ok
[2025-11-23 00:39:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:39:42] Checking for apptainer binary...
[2025-11-23 00:39:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:39:42] Running /usr/bin/apptainer --version
[2025-11-23 00:39:42] apptainer version 1.3.2-1.el7
[2025-11-23 00:39:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:39:47] cg-vwn337.simple-grid.lan
[2025-11-23 00:39:47] apptainer works
[2025-11-23 00:39:47] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:39:47] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:39:47] Starting ATLAS job with PandaID=6893843993
[2025-11-23 00:39:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:23:00]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:23:00] 2025-11-24 01:22:12,114 | INFO     | time since job start (92366s) is within the limit (172800.0s)
[2025-11-24 02:23:00] 2025-11-24 01:22:13,493 | INFO     | monitor loop #6186: job 0:6893843993 is in state 'finished'
[2025-11-24 02:23:00] 2025-11-24 01:22:13,493 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:23:00] 2025-11-24 01:22:14,132 | INFO     | time since job start (92368s) is within the limit (172800.0s)
[2025-11-24 02:23:00] 2025-11-24 01:22:16,001 | INFO     | monitor loop #6187: job 0:6893843993 is in state 'finished'
[2025-11-24 02:23:00] 2025-11-24 01:22:16,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:23:00] 2025-11-24 01:22:16,142 | INFO     | time since job start (92370s) is within the limit (172800.0s)
[2025-11-24 02:23:00] 2025-11-24 01:22:18,151 | INFO     | time since job start (92372s) is within the limit (172800.0s)
[2025-11-24 02:23:00] 2025-11-24 01:22:18,508 | INFO     | monitor loop #6188: job 0:6893843993 is in state 'finished'
[2025-11-24 02:23:00] 2025-11-24 01:22:18,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:23:00] 2025-11-24 01:22:19,330 | INFO     | PID=23535 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 02:23:00] 2025-11-24 01:22:19,331 | INFO     | .. there are 9 such processes running
[2025-11-24 02:23:00] 2025-11-24 01:22:20,333 | INFO     | time since job start (92374s) is within the limit (172800.0s)
[2025-11-24 02:23:00] 2025-11-24 01:22:21,013 | INFO     | monitor loop #6189: job 0:6893843993 is in state 'finished'
[2025-11-24 02:23:00] 2025-11-24 01:22:21,013 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:23:00] 2025-11-24 01:22:22,340 | INFO     | time since job start (92376s) is within the limit (172800.0s)
[2025-11-24 02:23:00] 2025-11-24 01:22:22,405 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 02:23:00] 2025-11-24 01:22:22,406 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 02:23:00] 2025-11-24 01:22:22,408 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6893843993/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:23:00] 2025-11-24 01:22:22,409 | INFO     | extracted standard info from prmon json
[2025-11-24 02:23:00] 2025-11-24 01:22:22,409 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:23:00] 2025-11-24 01:22:22,409 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:23:00] 2025-11-24 01:22:22,445 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:23:00] 2025-11-24 01:22:22,448 | INFO     | sum of square deviations: 1059135938254.6827
[2025-11-24 02:23:00] 2025-11-24 01:22:22,538 | INFO     | sum of deviations: 2638264163086.349
[2025-11-24 02:23:00] 2025-11-24 01:22:22,539 | INFO     | mean x: 1763901315.8512616
[2025-11-24 02:23:00] 2025-11-24 01:22:22,539 | INFO     | mean y: 2851056.894422311
[2025-11-24 02:23:00] 2025-11-24 01:22:22,542 | INFO     | intersect: -4390954743.426001
[2025-11-24 02:23:00] 2025-11-24 01:22:22,545 | INFO     | chi2: 19.28912349289251
[2025-11-24 02:23:00] 2025-11-24 01:22:22,547 | INFO     | sum of square deviations: 1048622343178.023
[2025-11-24 02:23:00] 2025-11-24 01:22:22,632 | INFO     | sum of deviations: 3158827967736.8394
[2025-11-24 02:23:00] 2025-11-24 01:22:22,632 | INFO     | mean x: 1763901163.3557627
[2025-11-24 02:23:00] 2025-11-24 01:22:22,632 | INFO     | mean y: 2858605.6782145235
[2025-11-24 02:23:00] 2025-11-24 01:22:22,632 | INFO     | intersect: -5310646645.6454315
[2025-11-24 02:23:00] 2025-11-24 01:22:22,634 | INFO     | chi2: 15.757105119550586
[2025-11-24 02:23:00] 2025-11-24 01:22:22,635 | INFO     | current chi2=15.757105119550586 (change=18.31093245187306 %)
[2025-11-24 02:23:00] 2025-11-24 01:22:22,635 | INFO     | right removable region: 1500
[2025-11-24 02:23:00] 2025-11-24 01:22:22,637 | INFO     | sum of square deviations: 1048621101828.0232
[2025-11-24 02:23:00] 2025-11-24 01:22:22,697 | INFO     | sum of deviations: 2058396517114.1885
[2025-11-24 02:23:00] 2025-11-24 01:22:22,698 | INFO     | mean x: 1763901468.3557627
[2025-11-24 02:23:00] 2025-11-24 01:22:22,698 | INFO     | mean y: 2859465.231845436
[2025-11-24 02:23:00] 2025-11-24 01:22:22,698 | INFO     | intersect: -3459600552.6589327
[2025-11-24 02:23:00] 2025-11-24 01:22:22,700 | INFO     | chi2: 15.435267696695187
[2025-11-24 02:23:00] 2025-11-24 01:22:22,700 | INFO     | current chi2=15.435267696695187 (change=19.979424143442078 %)
[2025-11-24 02:23:00] 2025-11-24 01:22:22,700 | INFO     | left removable region: 10
[2025-11-24 02:23:00] 2025-11-24 01:22:22,702 | INFO     | sum of square deviations: 1025735646809.3422
[2025-11-24 02:23:00] 2025-11-24 01:22:22,774 | INFO     | sum of deviations: 2467351201224.263
[2025-11-24 02:23:00] 2025-11-24 01:22:22,775 | INFO     | mean x: 1763901437.8637583
[2025-11-24 02:23:00] 2025-11-24 01:22:22,775 | INFO     | mean y: 2871439.8140939595
[2025-11-24 02:23:00] 2025-11-24 01:22:22,775 | INFO     | intersect: -4240097345.654375
[2025-11-24 02:23:00] 2025-11-24 01:22:22,777 | INFO     | chi2: 10.779858403999569
[2025-11-24 02:23:00] 2025-11-24 01:22:22,777 | INFO     | current memory leak: 2.41 B/s (using 1490 data points, chi2=10.78)
[2025-11-24 02:23:00] 2025-11-24 01:22:22,780 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 02:23:00] 2025-11-24 01:22:22,780 | INFO     | ..............................
[2025-11-24 02:23:00] 2025-11-24 01:22:22,780 | INFO     | . Timing measurements:
[2025-11-24 02:23:00] 2025-11-24 01:22:22,780 | INFO     | . get job = 0 s
[2025-11-24 02:23:00] 2025-11-24 01:22:22,780 | INFO     | . initial setup = 6 s
[2025-11-24 02:23:00] 2025-11-24 01:22:22,781 | INFO     | . payload setup = 138 s
[2025-11-24 02:23:00] 2025-11-24 01:22:22,781 | INFO     | . stage-in = 0 s
[2025-11-24 02:23:00] 2025-11-24 01:22:22,781 | INFO     | . payload execution = 91942 s
[2025-11-24 02:23:00] 2025-11-24 01:22:22,781 | INFO     | . stage-out = 5 s
[2025-11-24 02:23:00] 2025-11-24 01:22:22,781 | INFO     | . log creation = 2 s
[2025-11-24 02:23:00] 2025-11-24 01:22:22,781 | INFO     | ..............................
[2025-11-24 02:23:00] 2025-11-24 01:22:23,087 | INFO     | 
[2025-11-24 02:23:00] 2025-11-24 01:22:23,087 | INFO     | job summary report
[2025-11-24 02:23:00] 2025-11-24 01:22:23,087 | INFO     | --------------------------------------------------
[2025-11-24 02:23:00] 2025-11-24 01:22:23,087 | INFO     | PanDA job id: 6893843993
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | task id: 47523449
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | errors: (none)
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | pilot state: finished 
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | transexitcode: 0
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | exeerrorcode: 0
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | exeerrordiag: 
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | exitcode: 0
[2025-11-24 02:23:00] 2025-11-24 01:22:23,088 | INFO     | exitmsg: OK
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | cpuconsumptiontime: 341062 s
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | nevents: 1000
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | neventsw: 0
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | pid: 30564
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | pgrp: 30564
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | corecount: 8
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | event service: False
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | sizes: {0: 2298580, 1: 2298835, 2: 2298835, 12: 2298863, 23: 2298891, 34: 2298919, 45: 2299075, 56: 2299103, 66: 2299131, 77: 2299159, 88: 2299215, 94: 2299785, 99
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | --------------------------------------------------
[2025-11-24 02:23:00] 2025-11-24 01:22:23,089 | INFO     | 
[2025-11-24 02:23:00] 2025-11-24 01:22:23,090 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-24 02:23:00] 2025-11-24 01:22:23,276 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,277 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,277 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,277 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,277 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,277 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:23:00] 2025-11-24 01:22:23,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,279 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:23:00] 2025-11-24 01:22:23,279 | INFO     | job 6893843993 has completed (purged errors)
[2025-11-24 02:23:00] 2025-11-24 01:22:23,279 | INFO     | overall cleanup function is called
[2025-11-24 02:23:00] 2025-11-24 01:22:24,309 | INFO     | --- collectZombieJob: --- 10, [30564]
[2025-11-24 02:23:00] 2025-11-24 01:22:24,310 | INFO     | zombie collector waiting for pid 30564
[2025-11-24 02:23:00] 2025-11-24 01:22:24,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:23:00] 2025-11-24 01:22:24,310 | INFO     | collected zombie processes
[2025-11-24 02:23:00] 2025-11-24 01:22:24,310 | INFO     | will attempt to kill all subprocesses of pid=30564
[2025-11-24 02:23:00] 2025-11-24 01:22:24,424 | INFO     | process IDs to be killed: [30564] (in reverse order)
[2025-11-24 02:23:00] 2025-11-24 01:22:25,336 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:23:00] 2025-11-24 01:22:25,337 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:23:00] 2025-11-24 01:22:25,341 | INFO     | did not find any defunct processes belonging to 30564
[2025-11-24 02:23:00] 2025-11-24 01:22:25,353 | INFO     | did not find any defunct processes belonging to 30564
[2025-11-24 02:23:00] 2025-11-24 01:22:25,428 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:23:00] 2025-11-24 01:22:25,429 | INFO     | ready for new job
[2025-11-24 02:23:00] 2025-11-24 01:22:25,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:23:00] 2025-11-24 01:22:25,437 | INFO     | ***************************************
[2025-11-24 02:23:00] 2025-11-24 01:22:25,438 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:23:00] 2025-11-24 01:22:25,438 | INFO     | ***************************************
[2025-11-24 02:23:00] 2025-11-24 01:22:25,438 | INFO     | 
[2025-11-24 02:23:00] 2025-11-24 01:22:25,439 | INFO     | pilot is running in a VM
[2025-11-24 02:23:00] 2025-11-24 01:22:25,439 | INFO     | architecture information:
[2025-11-24 02:23:00] 2025-11-24 01:22:25,443 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:23:00] 2025-11-24 01:22:25,595 | INFO     | cat /etc/os-release:
[2025-11-24 02:23:00] NAME="CentOS Linux"
[2025-11-24 02:23:00] VERSION="7 (Core)"
[2025-11-24 02:23:00] ID="centos"
[2025-11-24 02:23:00] ID_LIKE="rhel fedora"
[2025-11-24 02:23:00] VERSION_ID="7"
[2025-11-24 02:23:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:23:00] ANSI_COLOR="0;31"
[2025-11-24 02:23:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:23:00] HOME_URL="https://www.centos.org/"
[2025-11-24 02:23:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:23:00] 
[2025-11-24 02:23:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:23:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:23:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:23:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:23:00] 
[2025-11-24 02:23:00] 2025-11-24 01:22:25,596 | INFO     | ***************************************
[2025-11-24 02:23:00] 2025-11-24 01:22:26,099 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-24 02:23:00] 2025-11-24 01:22:26,299 | INFO     | sufficient remaining disk space (494991835136 B)
[2025-11-24 02:23:00] 2025-11-24 01:22:26,300 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:23:00] 2025-11-24 01:22:26,300 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:23:00] 2025-11-24 01:22:26,300 | INFO     | update_server=False
[2025-11-24 02:23:00] 2025-11-24 01:22:26,300 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:23:00] 2025-11-24 01:22:27,035 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:23:00] 2025-11-24 01:22:27,035 | INFO     | aborting loop
[2025-11-24 02:23:00] 2025-11-24 01:22:27,183 | INFO     | all data control threads have been joined
[2025-11-24 02:23:00] 2025-11-24 01:22:27,307 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:27,351 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:27,378 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:23:00] 2025-11-24 01:22:27,621 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:27,643 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:27,728 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:23:00] 2025-11-24 01:22:27,770 | INFO     | all payload control threads have been joined
[2025-11-24 02:23:00] 2025-11-24 01:22:27,907 | INFO     | all job control threads have been joined
[2025-11-24 02:23:00] 2025-11-24 01:22:27,925 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:23:00] 2025-11-24 01:22:28,041 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,089 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,190 | INFO     | [data] control thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,226 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:23:00] 2025-11-24 01:22:28,491 | INFO     | [job] validate thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,537 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,623 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,628 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,777 | INFO     | [payload] control thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,914 | INFO     | [job] control thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:28,931 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:29,735 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:31,387 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:23:00] 2025-11-24 01:22:32,735 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140338034034496)>', '<ExcThread(monitor, started 140337368520448)>']
[2025-11-24 02:23:00] 2025-11-24 01:22:37,761 | INFO     | all workflow threads have been joined
[2025-11-24 02:23:00] 2025-11-24 01:22:37,761 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:23:00] 2025-11-24 01:22:37,761 | INFO     | traces error code: 0
[2025-11-24 02:23:00] 2025-11-24 01:22:37,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:23:00] 2025-11-24 01:22:55,535 | INFO     | PID=23535 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 02:23:00] 2025-11-24 01:22:55,535 | INFO     | .. there are 9 such processes running
[2025-11-24 02:23:00] 2025-11-24 01:22:55,535 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:23:00] 2025-11-24 01:22:55,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:23:00] 2025-11-24 01:22:55,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:23:00] 2025-11-24 01:22:55,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:23:00] 2025-11-24 01:22:55,536 | INFO     | [monitor] control thread has ended
[2025-11-24 02:23:00] 2025-11-24 01:22:55,997 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:23:00] 2025-11-24 01:22:56,099 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:23:00] 2025-11-24 01:22:56,176 [wrapper] pilotpid: 23535
[2025-11-24 02:23:00] 2025-11-24 01:22:56,271 [wrapper] Pilot exit status: 0
[2025-11-24 02:23:00] 2025-11-24 01:22:56,715 [wrapper] pandaids: 6893843993
[2025-11-24 02:23:00] 2025-11-24 01:22:57,469 [wrapper] cleanup supervisor_pilot 23673 23536
[2025-11-24 02:23:00] 2025-11-24 01:22:57,523 [wrapper] Test setup, not cleaning
[2025-11-24 02:23:00] 2025-11-24 01:22:57,581 [wrapper] apfmon messages muted
[2025-11-24 02:23:00] 2025-11-24 01:22:57,632 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:23:00] 2025-11-24 01:22:57,746 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:23:00]  *** Error codes and diagnostics ***
[2025-11-24 02:23:00]     "exeErrorCode": 0,
[2025-11-24 02:23:00]     "exeErrorDiag": "",
[2025-11-24 02:23:00]     "pilotErrorCode": 0,
[2025-11-24 02:23:00]     "pilotErrorDiag": "",
[2025-11-24 02:23:00]  *** Listing of results directory ***
[2025-11-24 02:23:00] total 1332144
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 02:23:00] -rwx------. 1 boinc boinc     36292 Nov 20 11:22 runpilot2-wrapper.sh
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:23 queuedata.json
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc       100 Nov 23 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:23:00] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 00:39 run_atlas
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc       105 Nov 23 00:39 job.xml
[2025-11-24 02:23:00] -rw-r--r--. 2 boinc boinc 408770554 Nov 23 00:39 EVNT.47493127._000209.pool.root.1
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc      6391 Nov 23 00:39 init_data.xml
[2025-11-24 02:23:00] -rw-r--r--. 2 boinc boinc     15847 Nov 23 00:39 start_atlas.sh
[2025-11-24 02:23:00] drwxrwx--x. 2 boinc boinc        68 Nov 23 00:39 shared
[2025-11-24 02:23:00] -rw-r--r--. 2 boinc boinc    590103 Nov 23 00:39 input.tar.gz
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc         0 Nov 23 00:39 boinc_lockfile
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc      2786 Nov 23 00:39 pandaJob.out
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc    989784 Nov 23 00:42 agis_schedconf.cvmfs.json
[2025-11-24 02:23:00] drwx------. 5 boinc boinc      4096 Nov 23 00:42 pilot3
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc       533 Nov 24 01:55 boinc_task_state.xml
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc 921800443 Nov 24 02:18 HITS.47523449._002082.pool.root.1
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc      1031 Nov 24 02:20 memory_monitor_summary.json
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc   1526164 Nov 24 02:20 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc   2563894 Nov 24 02:20 log.47523449._002082.job.log.tgz.1
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc        95 Nov 24 02:22 pilot_heartbeat.json
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc      8630 Nov 24 02:22 heartbeat.json
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc      8192 Nov 24 02:22 boinc_mmap_file
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc        29 Nov 24 02:22 wrapper_checkpoint.txt
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc       820 Nov 24 02:22 pilotlog.txt
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc  12255760 Nov 24 02:22 log.47523449._002082.job.log.1
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc       353 Nov 24 02:22 output.list
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc       620 Nov 24 02:22 runtime_log
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc  14837760 Nov 24 02:22 result.tar.gz
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc      8817 Nov 24 02:23 runtime_log.err
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc       662 Nov 24 02:23 75NNDmqyGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHSGKDm9Ec4Go.diag
[2025-11-24 02:23:00] -rw-r--r--. 1 boinc boinc     21511 Nov 24 02:23 stderr.txt
[2025-11-24 02:23:00] HITS file was successfully produced:
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc 921800443 Nov 24 02:18 shared/HITS.pool.root.1
[2025-11-24 02:23:00]  *** Contents of shared directory: ***
[2025-11-24 02:23:00] total 1314476
[2025-11-24 02:23:00] -rw-r--r--. 2 boinc boinc 408770554 Nov 23 00:39 ATLAS.root_0
[2025-11-24 02:23:00] -rw-r--r--. 2 boinc boinc     15847 Nov 23 00:39 start_atlas.sh
[2025-11-24 02:23:00] -rw-r--r--. 2 boinc boinc    590103 Nov 23 00:39 input.tar.gz
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc 921800443 Nov 24 02:18 HITS.pool.root.1
[2025-11-24 02:23:00] -rw-------. 1 boinc boinc  14837760 Nov 24 02:22 result.tar.gz
02:23:02 (19618): run_atlas exited; CPU time 341561.053914
02:23:02 (19618): called boinc_finish(0)

</stderr_txt>
]]>

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